RNA–Protein interactions for RNA: ENST00000559670.5

LRRC49-218, Transcript of leucine rich repeat containing 49, humanhuman

TSL 4

Gene LRRC49, Length 527 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC49-218ENST00000559670 AEBP2Q6ZN18 517 aaPredicted RBP23.72■■□□□ 1.39
LRRC49-218ENST00000559670 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
LRRC49-218ENST00000559670 SENP3Q9H4L4 574 aaPredicted RBP20.19■□□□□ 0.82
LRRC49-218ENST00000559670 PHF23Q9BUL5 403 aaPredicted RBP19.93■□□□□ 0.78
LRRC49-218ENST00000559670 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
LRRC49-218ENST00000559670 FOXD1Q16676 465 aa18.84■□□□□ 0.61
LRRC49-218ENST00000559670 ABCC9O60706 1549 aa18.14■□□□□ 0.49
LRRC49-218ENST00000559670 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
LRRC49-218ENST00000559670 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
LRRC49-218ENST00000559670 PPP6R1Q9UPN7 881 aa17.64■□□□□ 0.41
LRRC49-218ENST00000559670 PIAS4Q8N2W9 510 aaPredicted RBP17.6■□□□□ 0.41
LRRC49-218ENST00000559670 MSH5O43196 834 aa17.59■□□□□ 0.41
LRRC49-218ENST00000559670 ADRA2BP18089 450 aa17.58■□□□□ 0.4
LRRC49-218ENST00000559670 CCDC180Q9P1Z9 1646 aa17.45■□□□□ 0.38
LRRC49-218ENST00000559670 POTEDQ86YR6 584 aa17.14■□□□□ 0.33
LRRC49-218ENST00000559670 RB1CC1Q8TDY2 1594 aa16.97■□□□□ 0.31
LRRC49-218ENST00000559670 DNAJC5Q9H3Z4 198 aa16.83■□□□□ 0.28
LRRC49-218ENST00000559670 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
LRRC49-218ENST00000559670 NACADO15069 1562 aa16.65■□□□□ 0.26
LRRC49-218ENST00000559670 UNC13AQ9UPW8 1703 aa16.58■□□□□ 0.24
LRRC49-218ENST00000559670 BICRAQ9NZM4 1560 aa16.48■□□□□ 0.23
LRRC49-218ENST00000559670 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
LRRC49-218ENST00000559670 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
LRRC49-218ENST00000559670 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
LRRC49-218ENST00000559670 SHROOM4Q9ULL8 1493 aa16.22■□□□□ 0.19
LRRC49-218ENST00000559670 MYO15BQ96JP2 1530 aa16.18■□□□□ 0.18
LRRC49-218ENST00000559670 EIF4G1Q04637 1599 aaKnown RBP16.15■□□□□ 0.18
LRRC49-218ENST00000559670 MAPK8IP2Q13387 824 aaPredicted RBP16.13■□□□□ 0.17
LRRC49-218ENST00000559670 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
LRRC49-218ENST00000559670 DMRT2Q9Y5R5 561 aa16.03■□□□□ 0.16
LRRC49-218ENST00000559670 CUX2O14529 1486 aa16■□□□□ 0.15
LRRC49-218ENST00000559670 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
LRRC49-218ENST00000559670 PPP4R3CPQ6ZMV5 832 aa15.79■□□□□ 0.12
LRRC49-218ENST00000559670 TRIM41Q8WV44 630 aa15.76■□□□□ 0.11
LRRC49-218ENST00000559670 ERCC6Q03468 1493 aa15.74■□□□□ 0.11
LRRC49-218ENST00000559670 DCAF1Q9Y4B6 1507 aa15.68■□□□□ 0.1
LRRC49-218ENST00000559670 ZCCHC6Q5VYS8 1495 aaKnown RBP15.6■□□□□ 0.09
LRRC49-218ENST00000559670 CNKSR2Q8WXI2 1034 aa15.48■□□□□ 0.07
LRRC49-218ENST00000559670 HOXD11P31277 338 aaPredicted RBP15.45■□□□□ 0.06
LRRC49-218ENST00000559670 THOC2Q8NI27 1593 aaKnown RBP15.41■□□□□ 0.06
LRRC49-218ENST00000559670 NCAPD3P42695 1498 aa15.37■□□□□ 0.05
LRRC49-218ENST00000559670 NESP48681 1621 aa15.36■□□□□ 0.05
LRRC49-218ENST00000559670 DCAF8L1A6NGE4 600 aa15.33■□□□□ 0.04
LRRC49-218ENST00000559670 RNF216Q9NWF9 866 aaPredicted RBP15.33■□□□□ 0.04
LRRC49-218ENST00000559670 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
LRRC49-218ENST00000559670 HMGXB3Q12766 1538 aa15.21■□□□□ 0.03
LRRC49-218ENST00000559670 ATAD2BQ9ULI0 1458 aa15.2■□□□□ 0.02
LRRC49-218ENST00000559670 KIF21AQ7Z4S6 1674 aa15.17■□□□□ 0.02
LRRC49-218ENST00000559670 LAMC3Q9Y6N6 1575 aa15.17■□□□□ 0.02
LRRC49-218ENST00000559670 BAZ1AQ9NRL2 1556 aaPredicted RBP15.16■□□□□ 0.02
LRRC49-218ENST00000559670 NCBP3Q53F19 620 aaKnown RBP15.16■□□□□ 0.02
LRRC49-218ENST00000559670 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
LRRC49-218ENST00000559670 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
LRRC49-218ENST00000559670 CACNB1Q02641 598 aaPredicted RBP15.06■□□□□ 0
LRRC49-218ENST00000559670 BAZ1BQ9UIG0 1483 aaKnown RBP15.03■□□□□ -0
LRRC49-218ENST00000559670 RNF39Q9H2S5 420 aa15.03■□□□□ -0
LRRC49-218ENST00000559670 RIMBP3CA6NJZ7 1639 aa15.02□□□□□ -0.01
LRRC49-218ENST00000559670 RIMBP3BA6NNM3 1639 aa15.02□□□□□ -0.01
LRRC49-218ENST00000559670 SMARCA4P51532 1647 aa15.02□□□□□ -0.01
LRRC49-218ENST00000559670 RIMBP3Q9UFD9 1639 aa15.02□□□□□ -0.01
LRRC49-218ENST00000559670 MRC2Q9UBG0 1479 aa15.01□□□□□ -0.01
LRRC49-218ENST00000559670 WDR62O43379 1518 aa15.01□□□□□ -0.01
LRRC49-218ENST00000559670 NPM3O75607 178 aaKnown RBP14.99□□□□□ -0.01
LRRC49-218ENST00000559670 ARHGEF11O15085 1522 aa14.88□□□□□ -0.03
LRRC49-218ENST00000559670 TRHP20396 242 aaPredicted RBP14.88□□□□□ -0.03
LRRC49-218ENST00000559670 PEG3Q9GZU2 1588 aa14.88□□□□□ -0.03
LRRC49-218ENST00000559670 CADPSQ9ULU8 1353 aa14.85□□□□□ -0.03
LRRC49-218ENST00000559670 CEP164Q9UPV0 1460 aa14.8□□□□□ -0.04
LRRC49-218ENST00000559670 C1QBPQ07021 282 aaKnown RBP14.79□□□□□ -0.04
LRRC49-218ENST00000559670 CYB5RLQ6IPT4 315 aa14.78□□□□□ -0.04
LRRC49-218ENST00000559670 KCNA4P22459 653 aa14.74□□□□□ -0.05
LRRC49-218ENST00000559670 FANCD2Q9BXW9 1451 aa14.69□□□□□ -0.06
LRRC49-218ENST00000559670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
LRRC49-218ENST00000559670 ARAP1Q96P48 1450 aa14.68□□□□□ -0.06
LRRC49-218ENST00000559670 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
LRRC49-218ENST00000559670 URB2Q14146 1524 aaKnown RBP14.62□□□□□ -0.07
LRRC49-218ENST00000559670 RSF1Q96T23 1441 aaPredicted RBP14.56□□□□□ -0.08
LRRC49-218ENST00000559670 ZNF608Q9ULD9 1512 aaPredicted RBP14.56□□□□□ -0.08
LRRC49-218ENST00000559670 CFTRP13569 1480 aa14.53□□□□□ -0.08
LRRC49-218ENST00000559670 IFT140Q96RY7 1462 aa14.53□□□□□ -0.08
LRRC49-218ENST00000559670 CHD1O14646 1710 aa14.52□□□□□ -0.09
LRRC49-218ENST00000559670 ILDR1Q86SU0 546 aaPredicted RBP14.51□□□□□ -0.09
LRRC49-218ENST00000559670 EIF4G3O43432 1585 aaKnown RBP14.47□□□□□ -0.09
LRRC49-218ENST00000559670 U3KPZ7 1027 aaPredicted RBP14.43□□□□□ -0.1
LRRC49-218ENST00000559670 WIZO95785 1651 aa14.42□□□□□ -0.1
LRRC49-218ENST00000559670 FBLN2P98095 1184 aa14.37□□□□□ -0.11
LRRC49-218ENST00000559670 PRDM2Q13029 1718 aa14.37□□□□□ -0.11
LRRC49-218ENST00000559670 TOPBP1Q92547 1522 aa14.33□□□□□ -0.12
LRRC49-218ENST00000559670 CLASP1Q7Z460 1538 aa14.32□□□□□ -0.12
LRRC49-218ENST00000559670 SLC4A2P04920 1241 aa14.32□□□□□ -0.12
LRRC49-218ENST00000559670 AQRO60306 1485 aaKnown RBP eCLIP14.31□□□□□ -0.12
LRRC49-218ENST00000559670 TARBP1Q13395 1621 aaKnown RBP14.27□□□□□ -0.12
LRRC49-218ENST00000559670 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
LRRC49-218ENST00000559670 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
LRRC49-218ENST00000559670 DNMBPQ6XZF7 1577 aa14.23□□□□□ -0.13
LRRC49-218ENST00000559670 GAPVD1Q14C86 1478 aa14.23□□□□□ -0.13
LRRC49-218ENST00000559670 SPINK5Q9NQ38 1064 aaPredicted RBP14.21□□□□□ -0.13
LRRC49-218ENST00000559670 TOP2AP11388 1531 aaKnown RBP14.2□□□□□ -0.14
LRRC49-218ENST00000559670 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
LRRC49-218ENST00000559670 CAPN15O75808 1086 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms