RNA–Protein interactions for RNA: ENST00000558731.1

CSPG4P5-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 5, humanhuman

BASIC

Gene CSPG4P5, Length 3,730 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P5-201ENST00000558731 NISCHQ9Y2I1 1504 aa23.06■■□□□ 1.28
CSPG4P5-201ENST00000558731 DCAF8L2P0C7V8 631 aa20.13■□□□□ 0.81
CSPG4P5-201ENST00000558731 SHROOM4Q9ULL8 1493 aa19.87■□□□□ 0.77
CSPG4P5-201ENST00000558731 CCDC180Q9P1Z9 1646 aa19.63■□□□□ 0.73
CSPG4P5-201ENST00000558731 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.69
CSPG4P5-201ENST00000558731 SUPT5HO00267 1087 aaKnown RBP19.3■□□□□ 0.68
CSPG4P5-201ENST00000558731 ABCC9O60706 1549 aa19.22■□□□□ 0.67
CSPG4P5-201ENST00000558731 SCRIBQ14160 1630 aa18.7■□□□□ 0.58
CSPG4P5-201ENST00000558731 DCAF1Q9Y4B6 1507 aa18.68■□□□□ 0.58
CSPG4P5-201ENST00000558731 NACADO15069 1562 aa18.43■□□□□ 0.54
CSPG4P5-201ENST00000558731 PABPN1Q86U42 306 aaKnown RBP eCLIP18.43■□□□□ 0.54
CSPG4P5-201ENST00000558731 RB1CC1Q8TDY2 1594 aa18.34■□□□□ 0.53
CSPG4P5-201ENST00000558731 MYO15BQ96JP2 1530 aa18.31■□□□□ 0.52
CSPG4P5-201ENST00000558731 CECR2Q9BXF3 1484 aa18.17■□□□□ 0.5
CSPG4P5-201ENST00000558731 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
CSPG4P5-201ENST00000558731 RSF1Q96T23 1441 aaPredicted RBP18.13■□□□□ 0.49
CSPG4P5-201ENST00000558731 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
CSPG4P5-201ENST00000558731 MROH2BQ7Z745 1585 aa17.97■□□□□ 0.47
CSPG4P5-201ENST00000558731 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
CSPG4P5-201ENST00000558731 TRIM41Q8WV44 630 aa17.9■□□□□ 0.46
CSPG4P5-201ENST00000558731 WIZO95785 1651 aa17.83■□□□□ 0.44
CSPG4P5-201ENST00000558731 UNC13AQ9UPW8 1703 aa17.81■□□□□ 0.44
CSPG4P5-201ENST00000558731 LOC105371045A0A1W2PR82 267 aa17.8■□□□□ 0.44
CSPG4P5-201ENST00000558731 BAZ1AQ9NRL2 1556 aaPredicted RBP17.78■□□□□ 0.44
CSPG4P5-201ENST00000558731 BICRAQ9NZM4 1560 aa17.71■□□□□ 0.42
CSPG4P5-201ENST00000558731 SMARCA4P51532 1647 aa17.64■□□□□ 0.42
CSPG4P5-201ENST00000558731 CCDC88BA6NC98 1476 aa17.51■□□□□ 0.39
CSPG4P5-201ENST00000558731 TOP2AP11388 1531 aaKnown RBP17.47■□□□□ 0.39
CSPG4P5-201ENST00000558731 BAZ1BQ9UIG0 1483 aaKnown RBP17.46■□□□□ 0.39
CSPG4P5-201ENST00000558731 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
CSPG4P5-201ENST00000558731 ABCC8Q09428 1581 aa17.36■□□□□ 0.37
CSPG4P5-201ENST00000558731 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
CSPG4P5-201ENST00000558731 PCGF6Q9BYE7 350 aa17.32■□□□□ 0.36
CSPG4P5-201ENST00000558731 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
CSPG4P5-201ENST00000558731 RANGAP1P46060 587 aaPredicted RBP17.3■□□□□ 0.36
CSPG4P5-201ENST00000558731 PPARGC1BQ86YN6 1023 aaKnown RBP17.27■□□□□ 0.35
CSPG4P5-201ENST00000558731 TTBK1Q5TCY1 1321 aaPredicted RBP17.25■□□□□ 0.35
CSPG4P5-201ENST00000558731 UBTFP17480 764 aaKnown RBP17.25■□□□□ 0.35
CSPG4P5-201ENST00000558731 WRNQ14191 1432 aaPredicted RBP eCLIP17.16■□□□□ 0.34
CSPG4P5-201ENST00000558731 SOGA1O94964 1423 aa17.14■□□□□ 0.33
CSPG4P5-201ENST00000558731 PEG3Q9GZU2 1588 aa17.13■□□□□ 0.33
CSPG4P5-201ENST00000558731 NCAPD3P42695 1498 aa17.1■□□□□ 0.33
CSPG4P5-201ENST00000558731 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
CSPG4P5-201ENST00000558731 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
CSPG4P5-201ENST00000558731 CC2D2AQ9P2K1 1620 aa17.04■□□□□ 0.32
CSPG4P5-201ENST00000558731 DNAJC5BQ9UF47 199 aa17.04■□□□□ 0.32
CSPG4P5-201ENST00000558731 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
CSPG4P5-201ENST00000558731 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
CSPG4P5-201ENST00000558731 TRIM26Q12899 539 aaPredicted RBP16.91■□□□□ 0.3
CSPG4P5-201ENST00000558731 CADPSQ9ULU8 1353 aa16.9■□□□□ 0.3
CSPG4P5-201ENST00000558731 NESP48681 1621 aa16.84■□□□□ 0.29
CSPG4P5-201ENST00000558731 CFTRP13569 1480 aa16.84■□□□□ 0.29
CSPG4P5-201ENST00000558731 EEA1Q15075 1411 aa16.8■□□□□ 0.28
CSPG4P5-201ENST00000558731 CEP162Q5TB80 1403 aa16.8■□□□□ 0.28
CSPG4P5-201ENST00000558731 APLP2Q06481 763 aa16.79■□□□□ 0.28
CSPG4P5-201ENST00000558731 GOLGA3Q08378 1498 aa16.76■□□□□ 0.27
CSPG4P5-201ENST00000558731 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
CSPG4P5-201ENST00000558731 CUX1P39880 1505 aa16.74■□□□□ 0.27
CSPG4P5-201ENST00000558731 ATP1B4Q9UN42 357 aaPredicted RBP16.72■□□□□ 0.27
CSPG4P5-201ENST00000558731 TNIKQ9UKE5 1360 aa16.72■□□□□ 0.27
CSPG4P5-201ENST00000558731 CUX2O14529 1486 aa16.71■□□□□ 0.27
CSPG4P5-201ENST00000558731 CEP164Q9UPV0 1460 aa16.7■□□□□ 0.26
CSPG4P5-201ENST00000558731 RAPGEF2Q9Y4G8 1499 aa16.7■□□□□ 0.26
CSPG4P5-201ENST00000558731 KIF27Q86VH2 1401 aa16.7■□□□□ 0.26
CSPG4P5-201ENST00000558731 TOP2BQ02880 1626 aa16.69■□□□□ 0.26
CSPG4P5-201ENST00000558731 HRCP23327 699 aa16.67■□□□□ 0.26
CSPG4P5-201ENST00000558731 P3H3Q8IVL6 736 aa16.67■□□□□ 0.26
CSPG4P5-201ENST00000558731 CLIP1P30622 1438 aa16.65■□□□□ 0.26
CSPG4P5-201ENST00000558731 FGD5Q6ZNL6 1462 aa16.64■□□□□ 0.25
CSPG4P5-201ENST00000558731 RAD54L2Q9Y4B4 1467 aa16.62■□□□□ 0.25
CSPG4P5-201ENST00000558731 TDRD9Q8NDG6 1382 aaKnown RBP16.58■□□□□ 0.24
CSPG4P5-201ENST00000558731 PDS5BQ9NTI5 1447 aa16.57■□□□□ 0.24
CSPG4P5-201ENST00000558731 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
CSPG4P5-201ENST00000558731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
CSPG4P5-201ENST00000558731 BIVM-ERCC5R4GMW8 1640 aa16.54■□□□□ 0.24
CSPG4P5-201ENST00000558731 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
CSPG4P5-201ENST00000558731 CCER1Q8TC90 406 aaPredicted RBP16.51■□□□□ 0.23
CSPG4P5-201ENST00000558731 IGF1RP08069 1367 aa16.51■□□□□ 0.23
CSPG4P5-201ENST00000558731 TOPBP1Q92547 1522 aa16.5■□□□□ 0.23
CSPG4P5-201ENST00000558731 POLA1P09884 1462 aaPredicted RBP16.48■□□□□ 0.23
CSPG4P5-201ENST00000558731 ERCC6Q03468 1493 aa16.47■□□□□ 0.23
CSPG4P5-201ENST00000558731 FBLN2P98095 1184 aa16.47■□□□□ 0.23
CSPG4P5-201ENST00000558731 KIF21BO75037 1637 aa16.47■□□□□ 0.23
CSPG4P5-201ENST00000558731 ITGAEP38570 1179 aa16.46■□□□□ 0.23
CSPG4P5-201ENST00000558731 PRXQ9BXM0 1461 aa16.44■□□□□ 0.22
CSPG4P5-201ENST00000558731 LAMC3Q9Y6N6 1575 aa16.44■□□□□ 0.22
CSPG4P5-201ENST00000558731 URB2Q14146 1524 aaKnown RBP16.43■□□□□ 0.22
CSPG4P5-201ENST00000558731 DNMBPQ6XZF7 1577 aa16.41■□□□□ 0.22
CSPG4P5-201ENST00000558731 ARID3CA6NKF2 412 aa16.41■□□□□ 0.22
CSPG4P5-201ENST00000558731 VPS8Q8N3P4 1428 aa16.39■□□□□ 0.21
CSPG4P5-201ENST00000558731 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
CSPG4P5-201ENST00000558731 KANK4Q5T7N3 995 aaPredicted RBP16.35■□□□□ 0.21
CSPG4P5-201ENST00000558731 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.21
CSPG4P5-201ENST00000558731 KIF21AQ7Z4S6 1674 aa16.33■□□□□ 0.21
CSPG4P5-201ENST00000558731 ERICH3Q5RHP9 1530 aa16.32■□□□□ 0.2
CSPG4P5-201ENST00000558731 GAPVD1Q14C86 1478 aa16.31■□□□□ 0.2
CSPG4P5-201ENST00000558731 ARAP1Q96P48 1450 aa16.3■□□□□ 0.2
CSPG4P5-201ENST00000558731 ABCA10Q8WWZ4 1543 aa16.29■□□□□ 0.2
CSPG4P5-201ENST00000558731 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
CSPG4P5-201ENST00000558731 MRC2Q9UBG0 1479 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms