RNA–Protein interactions for RNA: ENST00000557159.5

APEX1-216, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 2

Gene APEX1, Length 1,803 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-216ENST00000557159 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.79
APEX1-216ENST00000557159 CCDC180Q9P1Z9 1646 aa23.13■■□□□ 1.29
APEX1-216ENST00000557159 ABCC9O60706 1549 aa22.33■■□□□ 1.17
APEX1-216ENST00000557159 ZCCHC6Q5VYS8 1495 aaKnown RBP21.94■■□□□ 1.1
APEX1-216ENST00000557159 DCAF8L2P0C7V8 631 aa21.82■■□□□ 1.08
APEX1-216ENST00000557159 DCAF1Q9Y4B6 1507 aa21.74■■□□□ 1.07
APEX1-216ENST00000557159 MYO15BQ96JP2 1530 aa21.72■■□□□ 1.07
APEX1-216ENST00000557159 NACADO15069 1562 aa21.69■■□□□ 1.06
APEX1-216ENST00000557159 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
APEX1-216ENST00000557159 SHROOM4Q9ULL8 1493 aa21.15■□□□□ 0.98
APEX1-216ENST00000557159 SCRIBQ14160 1630 aa21.14■□□□□ 0.98
APEX1-216ENST00000557159 UNC13AQ9UPW8 1703 aa21.11■□□□□ 0.97
APEX1-216ENST00000557159 DNAJC5BQ9UF47 199 aa21.08■□□□□ 0.96
APEX1-216ENST00000557159 HRCP23327 699 aa21.07■□□□□ 0.96
APEX1-216ENST00000557159 BICRAQ9NZM4 1560 aa20.98■□□□□ 0.95
APEX1-216ENST00000557159 PABPN1Q86U42 306 aaKnown RBP eCLIP20.97■□□□□ 0.95
APEX1-216ENST00000557159 SUPT5HO00267 1087 aaKnown RBP20.74■□□□□ 0.91
APEX1-216ENST00000557159 CHIC1Q5VXU3 224 aa20.66■□□□□ 0.9
APEX1-216ENST00000557159 PCGF6Q9BYE7 350 aa20.46■□□□□ 0.87
APEX1-216ENST00000557159 CECR2Q9BXF3 1484 aa20.43■□□□□ 0.86
APEX1-216ENST00000557159 EIF4G1Q04637 1599 aaKnown RBP20.39■□□□□ 0.85
APEX1-216ENST00000557159 PELP1Q8IZL8 1130 aaKnown RBP20.34■□□□□ 0.85
APEX1-216ENST00000557159 BAZ1AQ9NRL2 1556 aaPredicted RBP20.31■□□□□ 0.84
APEX1-216ENST00000557159 SMARCA4P51532 1647 aa20.27■□□□□ 0.84
APEX1-216ENST00000557159 MROH2BQ7Z745 1585 aa20.24■□□□□ 0.83
APEX1-216ENST00000557159 PPARGC1BQ86YN6 1023 aaKnown RBP20.24■□□□□ 0.83
APEX1-216ENST00000557159 CC2D2AQ9P2K1 1620 aa20.21■□□□□ 0.83
APEX1-216ENST00000557159 RSF1Q96T23 1441 aaPredicted RBP20.17■□□□□ 0.82
APEX1-216ENST00000557159 TRIM26Q12899 539 aaPredicted RBP20.15■□□□□ 0.82
APEX1-216ENST00000557159 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
APEX1-216ENST00000557159 ATAD2BQ9ULI0 1458 aa20.1■□□□□ 0.81
APEX1-216ENST00000557159 ZEB1P37275 1124 aaPredicted RBP20.1■□□□□ 0.81
APEX1-216ENST00000557159 PEG3Q9GZU2 1588 aa20.09■□□□□ 0.81
APEX1-216ENST00000557159 SMARCA2P51531 1590 aa20.07■□□□□ 0.8
APEX1-216ENST00000557159 NCAPD3P42695 1498 aa20.06■□□□□ 0.8
APEX1-216ENST00000557159 WIZO95785 1651 aa20.02■□□□□ 0.79
APEX1-216ENST00000557159 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
APEX1-216ENST00000557159 BAZ1BQ9UIG0 1483 aaKnown RBP19.93■□□□□ 0.78
APEX1-216ENST00000557159 LOC105371045A0A1W2PR82 267 aa19.88■□□□□ 0.77
APEX1-216ENST00000557159 TOP2AP11388 1531 aaKnown RBP19.82■□□□□ 0.76
APEX1-216ENST00000557159 SCAF1Q9H7N4 1312 aaKnown RBP19.67■□□□□ 0.74
APEX1-216ENST00000557159 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
APEX1-216ENST00000557159 MYT1Q01538 1121 aa19.61■□□□□ 0.73
APEX1-216ENST00000557159 CADPSQ9ULU8 1353 aa19.49■□□□□ 0.71
APEX1-216ENST00000557159 TRIM41Q8WV44 630 aa19.46■□□□□ 0.71
APEX1-216ENST00000557159 CFTRP13569 1480 aa19.45■□□□□ 0.7
APEX1-216ENST00000557159 NESP48681 1621 aa19.44■□□□□ 0.7
APEX1-216ENST00000557159 LAMC3Q9Y6N6 1575 aa19.43■□□□□ 0.7
APEX1-216ENST00000557159 ACIN1Q9UKV3 1341 aaKnown RBP19.38■□□□□ 0.69
APEX1-216ENST00000557159 PDS5BQ9NTI5 1447 aa19.31■□□□□ 0.68
APEX1-216ENST00000557159 FANCD2Q9BXW9 1451 aa19.24■□□□□ 0.67
APEX1-216ENST00000557159 PRDM2Q13029 1718 aa19.23■□□□□ 0.67
APEX1-216ENST00000557159 CENPBP07199 599 aaPredicted RBP19.22■□□□□ 0.67
APEX1-216ENST00000557159 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
APEX1-216ENST00000557159 NEUROD1Q13562 356 aa19.19■□□□□ 0.66
APEX1-216ENST00000557159 KIF21AQ7Z4S6 1674 aa19.17■□□□□ 0.66
APEX1-216ENST00000557159 CEP164Q9UPV0 1460 aa19.17■□□□□ 0.66
APEX1-216ENST00000557159 WRNQ14191 1432 aaPredicted RBP eCLIP19.12■□□□□ 0.655e-6■■■■■ 29.2
APEX1-216ENST00000557159 CUX2O14529 1486 aa19.08■□□□□ 0.65
APEX1-216ENST00000557159 DIEXFQ68CQ4 756 aaKnown RBP19.08■□□□□ 0.64
APEX1-216ENST00000557159 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
APEX1-216ENST00000557159 FAM9AQ8IZU1 332 aaPredicted RBP19.06■□□□□ 0.64
APEX1-216ENST00000557159 CCER1Q8TC90 406 aaPredicted RBP19.06■□□□□ 0.64
APEX1-216ENST00000557159 GTF3C3Q9Y5Q9 886 aa19.06■□□□□ 0.64
APEX1-216ENST00000557159 THOC2Q8NI27 1593 aaKnown RBP19.03■□□□□ 0.64
APEX1-216ENST00000557159 URB2Q14146 1524 aaKnown RBP19.02■□□□□ 0.64
APEX1-216ENST00000557159 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
APEX1-216ENST00000557159 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
APEX1-216ENST00000557159 WDR62O43379 1518 aa18.99■□□□□ 0.63
APEX1-216ENST00000557159 TOPBP1Q92547 1522 aa18.97■□□□□ 0.63
APEX1-216ENST00000557159 CUX1P39880 1505 aa18.96■□□□□ 0.63
APEX1-216ENST00000557159 EEA1Q15075 1411 aa18.95■□□□□ 0.62
APEX1-216ENST00000557159 DNMBPQ6XZF7 1577 aa18.95■□□□□ 0.62
APEX1-216ENST00000557159 SYNJ1O43426 1573 aa18.89■□□□□ 0.61
APEX1-216ENST00000557159 TOP2BQ02880 1626 aa18.88■□□□□ 0.61
APEX1-216ENST00000557159 BIVM-ERCC5R4GMW8 1640 aa18.86■□□□□ 0.61
APEX1-216ENST00000557159 ZNF316A6NFI3 1004 aaPredicted RBP18.85■□□□□ 0.61
APEX1-216ENST00000557159 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
APEX1-216ENST00000557159 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
APEX1-216ENST00000557159 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
APEX1-216ENST00000557159 CEP162Q5TB80 1403 aa18.78■□□□□ 0.6
APEX1-216ENST00000557159 SOGA1O94964 1423 aa18.78■□□□□ 0.6
APEX1-216ENST00000557159 CSRNP3Q8WYN3 585 aa18.77■□□□□ 0.59
APEX1-216ENST00000557159 IFT140Q96RY7 1462 aa18.76■□□□□ 0.59
APEX1-216ENST00000557159 RAD54L2Q9Y4B4 1467 aa18.76■□□□□ 0.59
APEX1-216ENST00000557159 TARBP1Q13395 1621 aaKnown RBP18.73■□□□□ 0.59
APEX1-216ENST00000557159 CLSPNQ9HAW4 1339 aa18.72■□□□□ 0.59
APEX1-216ENST00000557159 EHMT2Q96KQ7 1210 aa18.69■□□□□ 0.58
APEX1-216ENST00000557159 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
APEX1-216ENST00000557159 ZNF608Q9ULD9 1512 aaPredicted RBP18.66■□□□□ 0.58
APEX1-216ENST00000557159 TDRD9Q8NDG6 1382 aaKnown RBP18.64■□□□□ 0.57
APEX1-216ENST00000557159 GOLGA3Q08378 1498 aa18.64■□□□□ 0.57
APEX1-216ENST00000557159 WDR97A6NE52 1622 aa18.62■□□□□ 0.57
APEX1-216ENST00000557159 RUSC2Q8N2Y8 1516 aa18.62■□□□□ 0.57
APEX1-216ENST00000557159 AQRO60306 1485 aaKnown RBP eCLIP18.61■□□□□ 0.573e-9■■■□□ 17.9
APEX1-216ENST00000557159 KIF21BO75037 1637 aa18.6■□□□□ 0.57
APEX1-216ENST00000557159 GAPVD1Q14C86 1478 aa18.56■□□□□ 0.56
APEX1-216ENST00000557159 EIF4G3O43432 1585 aaKnown RBP18.56■□□□□ 0.56
APEX1-216ENST00000557159 KIF27Q86VH2 1401 aa18.56■□□□□ 0.56
APEX1-216ENST00000557159 UBTFP17480 764 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms