RNA–Protein interactions for RNA: ENST00000556501.1

GPHN-213, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 435 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-213ENST00000556501 AEBP2Q6ZN18 517 aaPredicted RBP11.91□□□□□ -0.5
GPHN-213ENST00000556501 NISCHQ9Y2I1 1504 aa11.62□□□□□ -0.55
GPHN-213ENST00000556501 CHIC1Q5VXU3 224 aa11.4□□□□□ -0.58
GPHN-213ENST00000556501 SENP3Q9H4L4 574 aaPredicted RBP10.16□□□□□ -0.78
GPHN-213ENST00000556501 PHF23Q9BUL5 403 aaPredicted RBP10.1□□□□□ -0.79
GPHN-213ENST00000556501 CCDC180Q9P1Z9 1646 aa10.07□□□□□ -0.8
GPHN-213ENST00000556501 ZCCHC6Q5VYS8 1495 aaKnown RBP9.85□□□□□ -0.83
GPHN-213ENST00000556501 DCAF1Q9Y4B6 1507 aa9.64□□□□□ -0.87
GPHN-213ENST00000556501 SHROOM4Q9ULL8 1493 aa9.62□□□□□ -0.87
GPHN-213ENST00000556501 FOXD1Q16676 465 aa9.52□□□□□ -0.89
GPHN-213ENST00000556501 PLPPR3Q6T4P5 718 aa9.51□□□□□ -0.89
GPHN-213ENST00000556501 MYO15BQ96JP2 1530 aa9.4□□□□□ -0.91
GPHN-213ENST00000556501 SUPT5HO00267 1087 aaKnown RBP9.36□□□□□ -0.91
GPHN-213ENST00000556501 DCAF8L2P0C7V8 631 aa9.35□□□□□ -0.91
GPHN-213ENST00000556501 ABCC9O60706 1549 aa9.31□□□□□ -0.92
GPHN-213ENST00000556501 SCRIBQ14160 1630 aa9.25□□□□□ -0.93
GPHN-213ENST00000556501 NACADO15069 1562 aa9.24□□□□□ -0.93
GPHN-213ENST00000556501 POTEDQ86YR6 584 aa9.19□□□□□ -0.94
GPHN-213ENST00000556501 RSF1Q96T23 1441 aaPredicted RBP9.1□□□□□ -0.95
GPHN-213ENST00000556501 RB1CC1Q8TDY2 1594 aa9.1□□□□□ -0.95
GPHN-213ENST00000556501 MROH2BQ7Z745 1585 aa8.99□□□□□ -0.97
GPHN-213ENST00000556501 CECR2Q9BXF3 1484 aa8.99□□□□□ -0.97
GPHN-213ENST00000556501 UNC13AQ9UPW8 1703 aa8.99□□□□□ -0.97
GPHN-213ENST00000556501 BAZ1AQ9NRL2 1556 aaPredicted RBP8.98□□□□□ -0.97
GPHN-213ENST00000556501 MSH5O43196 834 aa8.97□□□□□ -0.97
GPHN-213ENST00000556501 WIZO95785 1651 aa8.95□□□□□ -0.98
GPHN-213ENST00000556501 EHMT2Q96KQ7 1210 aa8.92□□□□□ -0.98
GPHN-213ENST00000556501 SMARCA4P51532 1647 aa8.91□□□□□ -0.98
GPHN-213ENST00000556501 EIF4G1Q04637 1599 aaKnown RBP8.9□□□□□ -0.98
GPHN-213ENST00000556501 ADRA2BP18089 450 aa8.89□□□□□ -0.99
GPHN-213ENST00000556501 TOP2AP11388 1531 aaKnown RBP8.88□□□□□ -0.99
GPHN-213ENST00000556501 KCNA4P22459 653 aa8.87□□□□□ -0.99
GPHN-213ENST00000556501 BICRAQ9NZM4 1560 aa8.85□□□□□ -0.99
GPHN-213ENST00000556501 PIAS4Q8N2W9 510 aaPredicted RBP8.82□□□□□ -1
GPHN-213ENST00000556501 SMARCA2P51531 1590 aa8.8□□□□□ -1
GPHN-213ENST00000556501 PEG3Q9GZU2 1588 aa8.78□□□□□ -1
GPHN-213ENST00000556501 TRIM41Q8WV44 630 aa8.78□□□□□ -1
GPHN-213ENST00000556501 LOC105371045A0A1W2PR82 267 aa8.77□□□□□ -1.01
GPHN-213ENST00000556501 PPP6R1Q9UPN7 881 aa8.75□□□□□ -1.01
GPHN-213ENST00000556501 CCDC88BA6NC98 1476 aa8.74□□□□□ -1.01
GPHN-213ENST00000556501 HRCP23327 699 aa8.72□□□□□ -1.01
GPHN-213ENST00000556501 PCGF6Q9BYE7 350 aa8.68□□□□□ -1.02
GPHN-213ENST00000556501 ABCC8Q09428 1581 aa8.68□□□□□ -1.02
GPHN-213ENST00000556501 ATAD2BQ9ULI0 1458 aa8.64□□□□□ -1.03
GPHN-213ENST00000556501 TRIM26Q12899 539 aaPredicted RBP8.63□□□□□ -1.03
GPHN-213ENST00000556501 PABPN1Q86U42 306 aaKnown RBP eCLIP8.63□□□□□ -1.03
GPHN-213ENST00000556501 FAM9AQ8IZU1 332 aaPredicted RBP8.63□□□□□ -1.03
GPHN-213ENST00000556501 BAZ1BQ9UIG0 1483 aaKnown RBP8.61□□□□□ -1.03
GPHN-213ENST00000556501 EEA1Q15075 1411 aa8.61□□□□□ -1.03
GPHN-213ENST00000556501 CSRNP3Q8WYN3 585 aa8.58□□□□□ -1.04
GPHN-213ENST00000556501 HMGXB3Q12766 1538 aa8.58□□□□□ -1.04
GPHN-213ENST00000556501 SYNJ1O43426 1573 aa8.56□□□□□ -1.04
GPHN-213ENST00000556501 WRNQ14191 1432 aaPredicted RBP eCLIP8.56□□□□□ -1.04
GPHN-213ENST00000556501 SLC4A1APQ9BWU0 796 aaKnown RBP8.55□□□□□ -1.04
GPHN-213ENST00000556501 SOGA1O94964 1423 aa8.54□□□□□ -1.04
GPHN-213ENST00000556501 KIF21BO75037 1637 aa8.53□□□□□ -1.04
GPHN-213ENST00000556501 BIVM-ERCC5R4GMW8 1640 aa8.52□□□□□ -1.05
GPHN-213ENST00000556501 TNIKQ9UKE5 1360 aa8.51□□□□□ -1.05
GPHN-213ENST00000556501 CEP162Q5TB80 1403 aa8.51□□□□□ -1.05
GPHN-213ENST00000556501 NCAPD3P42695 1498 aa8.51□□□□□ -1.05
GPHN-213ENST00000556501 GOLGA3Q08378 1498 aa8.51□□□□□ -1.05
GPHN-213ENST00000556501 TOP2BQ02880 1626 aa8.51□□□□□ -1.05
GPHN-213ENST00000556501 RUSC2Q8N2Y8 1516 aa8.49□□□□□ -1.05
GPHN-213ENST00000556501 PRDM2Q13029 1718 aa8.49□□□□□ -1.05
GPHN-213ENST00000556501 CEP164Q9UPV0 1460 aa8.48□□□□□ -1.05
GPHN-213ENST00000556501 ZEB1P37275 1124 aaPredicted RBP8.45□□□□□ -1.06
GPHN-213ENST00000556501 PPARGC1BQ86YN6 1023 aaKnown RBP8.45□□□□□ -1.06
GPHN-213ENST00000556501 PPP4R3CPQ6ZMV5 832 aa8.44□□□□□ -1.06
GPHN-213ENST00000556501 CUX1P39880 1505 aa8.4□□□□□ -1.06
GPHN-213ENST00000556501 ERICH3Q5RHP9 1530 aa8.4□□□□□ -1.06
GPHN-213ENST00000556501 CFTRP13569 1480 aa8.4□□□□□ -1.06
GPHN-213ENST00000556501 NCBP3Q53F19 620 aaKnown RBP8.39□□□□□ -1.07
GPHN-213ENST00000556501 RAPGEF2Q9Y4G8 1499 aa8.37□□□□□ -1.07
GPHN-213ENST00000556501 CLIP1P30622 1438 aa8.37□□□□□ -1.07
GPHN-213ENST00000556501 UBTFP17480 764 aaKnown RBP8.36□□□□□ -1.07
GPHN-213ENST00000556501 PRXQ9BXM0 1461 aa8.35□□□□□ -1.07
GPHN-213ENST00000556501 VPS8Q8N3P4 1428 aa8.35□□□□□ -1.07
GPHN-213ENST00000556501 CC2D2AQ9P2K1 1620 aa8.32□□□□□ -1.08
GPHN-213ENST00000556501 KIF27Q86VH2 1401 aa8.3□□□□□ -1.08
GPHN-213ENST00000556501 ARAP1Q96P48 1450 aa8.28□□□□□ -1.08
GPHN-213ENST00000556501 CADPSQ9ULU8 1353 aa8.28□□□□□ -1.08
GPHN-213ENST00000556501 NPM3O75607 178 aaKnown RBP8.26□□□□□ -1.09
GPHN-213ENST00000556501 FGD5Q6ZNL6 1462 aa8.25□□□□□ -1.09
GPHN-213ENST00000556501 DNMBPQ6XZF7 1577 aa8.24□□□□□ -1.09
GPHN-213ENST00000556501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.23□□□□□ -1.09
GPHN-213ENST00000556501 CCER1Q8TC90 406 aaPredicted RBP8.23□□□□□ -1.09
GPHN-213ENST00000556501 CUX2O14529 1486 aa8.23□□□□□ -1.09
GPHN-213ENST00000556501 FANCD2Q9BXW9 1451 aa8.22□□□□□ -1.09
GPHN-213ENST00000556501 TTBK1Q5TCY1 1321 aaPredicted RBP8.22□□□□□ -1.09
GPHN-213ENST00000556501 WDR97A6NE52 1622 aa8.21□□□□□ -1.1
GPHN-213ENST00000556501 ARHGAP35Q9NRY4 1499 aa8.2□□□□□ -1.1
GPHN-213ENST00000556501 LAMC3Q9Y6N6 1575 aa8.19□□□□□ -1.1
GPHN-213ENST00000556501 CUL7Q14999 1698 aa8.19□□□□□ -1.1
GPHN-213ENST00000556501 TOPBP1Q92547 1522 aa8.19□□□□□ -1.1
GPHN-213ENST00000556501 IGF1RP08069 1367 aa8.18□□□□□ -1.1
GPHN-213ENST00000556501 ABCA10Q8WWZ4 1543 aa8.18□□□□□ -1.1
GPHN-213ENST00000556501 ZBTB22O15209 634 aa8.17□□□□□ -1.1
GPHN-213ENST00000556501 APLP2Q06481 763 aa8.17□□□□□ -1.1
GPHN-213ENST00000556501 MAP3K1Q13233 1512 aa8.17□□□□□ -1.1
GPHN-213ENST00000556501 CFAP43Q8NDM7 1665 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms