RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 NISCHQ9Y2I1 1504 aa10.9□□□□□ -0.66
TMEM260-210ENST00000556422 AEBP2Q6ZN18 517 aaPredicted RBP9.43□□□□□ -0.9
TMEM260-210ENST00000556422 CCDC180Q9P1Z9 1646 aa9.42□□□□□ -0.9
TMEM260-210ENST00000556422 CHIC1Q5VXU3 224 aa9.31□□□□□ -0.92
TMEM260-210ENST00000556422 ZCCHC6Q5VYS8 1495 aaKnown RBP9.21□□□□□ -0.93
TMEM260-210ENST00000556422 SHROOM4Q9ULL8 1493 aa9.04□□□□□ -0.96
TMEM260-210ENST00000556422 DCAF1Q9Y4B6 1507 aa8.99□□□□□ -0.97
TMEM260-210ENST00000556422 SLC24A1O60721 1099 aa8.98□□□□□ -0.97
TMEM260-210ENST00000556422 MYT1Q01538 1121 aa8.95□□□□□ -0.98
TMEM260-210ENST00000556422 PELP1Q8IZL8 1130 aaKnown RBP8.91□□□□□ -0.98
TMEM260-210ENST00000556422 DCAF8L2P0C7V8 631 aa8.88□□□□□ -0.99
TMEM260-210ENST00000556422 MYO15BQ96JP2 1530 aa8.8□□□□□ -1
TMEM260-210ENST00000556422 SUPT5HO00267 1087 aaKnown RBP8.76□□□□□ -1.01
TMEM260-210ENST00000556422 ABCC9O60706 1549 aa8.73□□□□□ -1.01
TMEM260-210ENST00000556422 SCRIBQ14160 1630 aa8.71□□□□□ -1.01
TMEM260-210ENST00000556422 NACADO15069 1562 aa8.69□□□□□ -1.02
TMEM260-210ENST00000556422 TTBK1Q5TCY1 1321 aaPredicted RBP8.64□□□□□ -1.03
TMEM260-210ENST00000556422 RB1CC1Q8TDY2 1594 aa8.57□□□□□ -1.04
TMEM260-210ENST00000556422 UNC13AQ9UPW8 1703 aa8.54□□□□□ -1.04
TMEM260-210ENST00000556422 RSF1Q96T23 1441 aaPredicted RBP8.53□□□□□ -1.04
TMEM260-210ENST00000556422 ERICH6Q7L0X2 663 aa8.53□□□□□ -1.04
TMEM260-210ENST00000556422 PHF23Q9BUL5 403 aaPredicted RBP8.51□□□□□ -1.05
TMEM260-210ENST00000556422 PRKCSHP14314 528 aaPredicted RBP8.5□□□□□ -1.05
TMEM260-210ENST00000556422 CECR2Q9BXF3 1484 aa8.49□□□□□ -1.05
TMEM260-210ENST00000556422 MROH2BQ7Z745 1585 aa8.46□□□□□ -1.06
TMEM260-210ENST00000556422 WIZO95785 1651 aa8.42□□□□□ -1.06
TMEM260-210ENST00000556422 BICRAQ9NZM4 1560 aa8.39□□□□□ -1.07
TMEM260-210ENST00000556422 BAZ1AQ9NRL2 1556 aaPredicted RBP8.39□□□□□ -1.07
TMEM260-210ENST00000556422 SMARCA4P51532 1647 aa8.36□□□□□ -1.07
TMEM260-210ENST00000556422 DAXXQ9UER7 740 aaPredicted RBP8.32□□□□□ -1.08
TMEM260-210ENST00000556422 EIF4G1Q04637 1599 aaKnown RBP8.31□□□□□ -1.08
TMEM260-210ENST00000556422 TOP2AP11388 1531 aaKnown RBP8.29□□□□□ -1.08
TMEM260-210ENST00000556422 PABPN1Q86U42 306 aaKnown RBP eCLIP8.26□□□□□ -1.09
TMEM260-210ENST00000556422 APLP2Q06481 763 aa8.25□□□□□ -1.09
TMEM260-210ENST00000556422 SMARCA2P51531 1590 aa8.25□□□□□ -1.09
TMEM260-210ENST00000556422 PEG3Q9GZU2 1588 aa8.24□□□□□ -1.09
TMEM260-210ENST00000556422 CCDC88BA6NC98 1476 aa8.21□□□□□ -1.09
TMEM260-210ENST00000556422 LOC105371045A0A1W2PR82 267 aa8.2□□□□□ -1.1
TMEM260-210ENST00000556422 TRIM41Q8WV44 630 aa8.19□□□□□ -1.1
TMEM260-210ENST00000556422 ABCC8Q09428 1581 aa8.15□□□□□ -1.11
TMEM260-210ENST00000556422 ATAD2BQ9ULI0 1458 aa8.15□□□□□ -1.11
TMEM260-210ENST00000556422 BAZ1BQ9UIG0 1483 aaKnown RBP8.09□□□□□ -1.11
TMEM260-210ENST00000556422 FAM9AQ8IZU1 332 aaPredicted RBP8.08□□□□□ -1.12
TMEM260-210ENST00000556422 EHMT2Q96KQ7 1210 aa8.08□□□□□ -1.12
TMEM260-210ENST00000556422 EIF5BO60841 1220 aaKnown RBP8.07□□□□□ -1.12
TMEM260-210ENST00000556422 HMGXB3Q12766 1538 aa8.05□□□□□ -1.12
TMEM260-210ENST00000556422 BCL11AQ9H165 835 aa8.03□□□□□ -1.12
TMEM260-210ENST00000556422 SYNJ1O43426 1573 aa8.03□□□□□ -1.12
TMEM260-210ENST00000556422 NCAPD3P42695 1498 aa8.02□□□□□ -1.13
TMEM260-210ENST00000556422 SOGA1O94964 1423 aa8.01□□□□□ -1.13
TMEM260-210ENST00000556422 PCGF6Q9BYE7 350 aa8.01□□□□□ -1.13
TMEM260-210ENST00000556422 WRNQ14191 1432 aaPredicted RBP eCLIP8□□□□□ -1.13
TMEM260-210ENST00000556422 RUSC2Q8N2Y8 1516 aa7.99□□□□□ -1.13
TMEM260-210ENST00000556422 DNAJC5BQ9UF47 199 aa7.97□□□□□ -1.13
TMEM260-210ENST00000556422 TOP2BQ02880 1626 aa7.95□□□□□ -1.14
TMEM260-210ENST00000556422 BIVM-ERCC5R4GMW8 1640 aa7.95□□□□□ -1.14
TMEM260-210ENST00000556422 EEA1Q15075 1411 aa7.95□□□□□ -1.14
TMEM260-210ENST00000556422 PRDM2Q13029 1718 aa7.95□□□□□ -1.14
TMEM260-210ENST00000556422 HRCP23327 699 aa7.93□□□□□ -1.14
TMEM260-210ENST00000556422 CC2D2AQ9P2K1 1620 aa7.93□□□□□ -1.14
TMEM260-210ENST00000556422 TRIM26Q12899 539 aaPredicted RBP7.92□□□□□ -1.14
TMEM260-210ENST00000556422 CFTRP13569 1480 aa7.92□□□□□ -1.14
TMEM260-210ENST00000556422 RANGAP1P46060 587 aaPredicted RBP7.9□□□□□ -1.14
TMEM260-210ENST00000556422 KIF21BO75037 1637 aa7.9□□□□□ -1.14
TMEM260-210ENST00000556422 PLPPR3Q6T4P5 718 aa7.9□□□□□ -1.15
TMEM260-210ENST00000556422 CSRNP3Q8WYN3 585 aa7.9□□□□□ -1.15
TMEM260-210ENST00000556422 CUX1P39880 1505 aa7.89□□□□□ -1.15
TMEM260-210ENST00000556422 CEP162Q5TB80 1403 aa7.89□□□□□ -1.15
TMEM260-210ENST00000556422 TNIKQ9UKE5 1360 aa7.89□□□□□ -1.15
TMEM260-210ENST00000556422 GOLGA3Q08378 1498 aa7.88□□□□□ -1.15
TMEM260-210ENST00000556422 NCBP3Q53F19 620 aaKnown RBP7.86□□□□□ -1.15
TMEM260-210ENST00000556422 RTN4Q9NQC3 1192 aaKnown RBP7.86□□□□□ -1.15
TMEM260-210ENST00000556422 CEP164Q9UPV0 1460 aa7.86□□□□□ -1.15
TMEM260-210ENST00000556422 RAPGEF2Q9Y4G8 1499 aa7.84□□□□□ -1.16
TMEM260-210ENST00000556422 CADPSQ9ULU8 1353 aa7.82□□□□□ -1.16
TMEM260-210ENST00000556422 PRXQ9BXM0 1461 aa7.8□□□□□ -1.16
TMEM260-210ENST00000556422 PPARGC1BQ86YN6 1023 aaKnown RBP7.8□□□□□ -1.16
TMEM260-210ENST00000556422 PLEKHG5O94827 1062 aa7.8□□□□□ -1.16
TMEM260-210ENST00000556422 UBTFP17480 764 aaKnown RBP7.8□□□□□ -1.16
TMEM260-210ENST00000556422 ERICH3Q5RHP9 1530 aa7.8□□□□□ -1.16
TMEM260-210ENST00000556422 NESP48681 1621 aa7.76□□□□□ -1.17
TMEM260-210ENST00000556422 CLIP1P30622 1438 aa7.76□□□□□ -1.17
TMEM260-210ENST00000556422 FANCD2Q9BXW9 1451 aa7.76□□□□□ -1.17
TMEM260-210ENST00000556422 KIF27Q86VH2 1401 aa7.75□□□□□ -1.17
TMEM260-210ENST00000556422 FGD5Q6ZNL6 1462 aa7.75□□□□□ -1.17
TMEM260-210ENST00000556422 VPS8Q8N3P4 1428 aa7.73□□□□□ -1.17
TMEM260-210ENST00000556422 DNMBPQ6XZF7 1577 aa7.73□□□□□ -1.17
TMEM260-210ENST00000556422 LAMC3Q9Y6N6 1575 aa7.73□□□□□ -1.17
TMEM260-210ENST00000556422 CUX2O14529 1486 aa7.72□□□□□ -1.17
TMEM260-210ENST00000556422 TOPBP1Q92547 1522 aa7.71□□□□□ -1.18
TMEM260-210ENST00000556422 ARAP1Q96P48 1450 aa7.71□□□□□ -1.18
TMEM260-210ENST00000556422 PODXL2Q9NZ53 605 aa7.7□□□□□ -1.18
TMEM260-210ENST00000556422 WDR97A6NE52 1622 aa7.7□□□□□ -1.18
TMEM260-210ENST00000556422 IGF1RP08069 1367 aa7.7□□□□□ -1.18
TMEM260-210ENST00000556422 POLA1P09884 1462 aaPredicted RBP7.7□□□□□ -1.18
TMEM260-210ENST00000556422 KIF21AQ7Z4S6 1674 aa7.69□□□□□ -1.18
TMEM260-210ENST00000556422 URB2Q14146 1524 aaKnown RBP7.68□□□□□ -1.18
TMEM260-210ENST00000556422 ABCA10Q8WWZ4 1543 aa7.68□□□□□ -1.18
TMEM260-210ENST00000556422 RAD54L2Q9Y4B4 1467 aa7.68□□□□□ -1.18
TMEM260-210ENST00000556422 CENPBP07199 599 aaPredicted RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms