RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 AEBP2Q6ZN18 517 aaPredicted RBP26.99■■□□□ 1.91
SRP54-210ENST00000556380 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
SRP54-210ENST00000556380 NISCHQ9Y2I1 1504 aa23.41■■□□□ 1.34
SRP54-210ENST00000556380 SENP3Q9H4L4 574 aaPredicted RBP22.97■■□□□ 1.27
SRP54-210ENST00000556380 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
SRP54-210ENST00000556380 FOXD1Q16676 465 aa21.42■■□□□ 1.02
SRP54-210ENST00000556380 CCDC180Q9P1Z9 1646 aa20.7■□□□□ 0.9
SRP54-210ENST00000556380 PLPPR3Q6T4P5 718 aa20.63■□□□□ 0.89
SRP54-210ENST00000556380 ABCC9O60706 1549 aa20.26■□□□□ 0.83
SRP54-210ENST00000556380 PPP6R1Q9UPN7 881 aa20.15■□□□□ 0.82
SRP54-210ENST00000556380 ADRA2BP18089 450 aa20.1■□□□□ 0.81
SRP54-210ENST00000556380 PIAS4Q8N2W9 510 aaPredicted RBP20.04■□□□□ 0.8
SRP54-210ENST00000556380 MSH5O43196 834 aa19.96■□□□□ 0.79
SRP54-210ENST00000556380 DCAF8L2P0C7V8 631 aa19.51■□□□□ 0.71
SRP54-210ENST00000556380 NACADO15069 1562 aa19.5■□□□□ 0.71
SRP54-210ENST00000556380 ZCCHC6Q5VYS8 1495 aaKnown RBP19.49■□□□□ 0.71
SRP54-210ENST00000556380 RB1CC1Q8TDY2 1594 aa19.48■□□□□ 0.71
SRP54-210ENST00000556380 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
SRP54-210ENST00000556380 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
SRP54-210ENST00000556380 POTEDQ86YR6 584 aa19.33■□□□□ 0.68
SRP54-210ENST00000556380 PABPN1Q86U42 306 aaKnown RBP eCLIP18.99■□□□□ 0.63
SRP54-210ENST00000556380 UNC13AQ9UPW8 1703 aa18.99■□□□□ 0.63
SRP54-210ENST00000556380 BICRAQ9NZM4 1560 aa18.95■□□□□ 0.62
SRP54-210ENST00000556380 SCRIBQ14160 1630 aa18.89■□□□□ 0.62
SRP54-210ENST00000556380 SHROOM4Q9ULL8 1493 aa18.72■□□□□ 0.59
SRP54-210ENST00000556380 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
SRP54-210ENST00000556380 MAPK8IP2Q13387 824 aaPredicted RBP18.43■□□□□ 0.54
SRP54-210ENST00000556380 EIF4G1Q04637 1599 aaKnown RBP18.41■□□□□ 0.54
SRP54-210ENST00000556380 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
SRP54-210ENST00000556380 CC2D2AQ9P2K1 1620 aa18.31■□□□□ 0.52
SRP54-210ENST00000556380 CECR2Q9BXF3 1484 aa18.26■□□□□ 0.51
SRP54-210ENST00000556380 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
SRP54-210ENST00000556380 PPP4R3CPQ6ZMV5 832 aa18.11■□□□□ 0.49
SRP54-210ENST00000556380 SMARCA4P51532 1647 aa18.1■□□□□ 0.49
SRP54-210ENST00000556380 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
SRP54-210ENST00000556380 NCAPD3P42695 1498 aa18.06■□□□□ 0.48
SRP54-210ENST00000556380 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
SRP54-210ENST00000556380 MROH2BQ7Z745 1585 aa18.04■□□□□ 0.48
SRP54-210ENST00000556380 SMARCA2P51531 1590 aa17.98■□□□□ 0.47
SRP54-210ENST00000556380 PEG3Q9GZU2 1588 aa17.96■□□□□ 0.46
SRP54-210ENST00000556380 HMGXB3Q12766 1538 aa17.9■□□□□ 0.46
SRP54-210ENST00000556380 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
SRP54-210ENST00000556380 BAZ1BQ9UIG0 1483 aaKnown RBP17.85■□□□□ 0.45
SRP54-210ENST00000556380 WIZO95785 1651 aa17.8■□□□□ 0.44
SRP54-210ENST00000556380 CNKSR2Q8WXI2 1034 aa17.73■□□□□ 0.43
SRP54-210ENST00000556380 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
SRP54-210ENST00000556380 HOXD11P31277 338 aaPredicted RBP17.62■□□□□ 0.41
SRP54-210ENST00000556380 NESP48681 1621 aa17.57■□□□□ 0.4
SRP54-210ENST00000556380 RNF216Q9NWF9 866 aaPredicted RBP17.53■□□□□ 0.4
SRP54-210ENST00000556380 CADPSQ9ULU8 1353 aa17.53■□□□□ 0.4
SRP54-210ENST00000556380 DCAF8L1A6NGE4 600 aa17.52■□□□□ 0.4
SRP54-210ENST00000556380 LAMC3Q9Y6N6 1575 aa17.49■□□□□ 0.39
SRP54-210ENST00000556380 CCDC88BA6NC98 1476 aa17.47■□□□□ 0.39
SRP54-210ENST00000556380 NCBP3Q53F19 620 aaKnown RBP17.45■□□□□ 0.38
SRP54-210ENST00000556380 SUPT5HO00267 1087 aaKnown RBP17.43■□□□□ 0.38
SRP54-210ENST00000556380 CFTRP13569 1480 aa17.43■□□□□ 0.38
SRP54-210ENST00000556380 ERCC6Q03468 1493 aa17.42■□□□□ 0.38
SRP54-210ENST00000556380 PDS5BQ9NTI5 1447 aa17.41■□□□□ 0.38
SRP54-210ENST00000556380 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
SRP54-210ENST00000556380 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
SRP54-210ENST00000556380 CUX2O14529 1486 aa17.25■□□□□ 0.35
SRP54-210ENST00000556380 THOC2Q8NI27 1593 aaKnown RBP17.24■□□□□ 0.35
SRP54-210ENST00000556380 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
SRP54-210ENST00000556380 MRC2Q9UBG0 1479 aa17.21■□□□□ 0.35
SRP54-210ENST00000556380 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
SRP54-210ENST00000556380 WDR62O43379 1518 aa17.16■□□□□ 0.34
SRP54-210ENST00000556380 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
SRP54-210ENST00000556380 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
SRP54-210ENST00000556380 CACNB1Q02641 598 aaPredicted RBP17.08■□□□□ 0.32
SRP54-210ENST00000556380 RNF39Q9H2S5 420 aa17.07■□□□□ 0.32
SRP54-210ENST00000556380 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
SRP54-210ENST00000556380 KCNA4P22459 653 aa17■□□□□ 0.31
SRP54-210ENST00000556380 ABCC8Q09428 1581 aa17■□□□□ 0.31
SRP54-210ENST00000556380 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
SRP54-210ENST00000556380 CUX1P39880 1505 aa16.91■□□□□ 0.3
SRP54-210ENST00000556380 IFT140Q96RY7 1462 aa16.89■□□□□ 0.29
SRP54-210ENST00000556380 POLA1P09884 1462 aaPredicted RBP16.88■□□□□ 0.29
SRP54-210ENST00000556380 FGD5Q6ZNL6 1462 aa16.83■□□□□ 0.28
SRP54-210ENST00000556380 ZNF608Q9ULD9 1512 aaPredicted RBP16.83■□□□□ 0.28
SRP54-210ENST00000556380 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
SRP54-210ENST00000556380 SOGA1O94964 1423 aa16.82■□□□□ 0.28
SRP54-210ENST00000556380 RAD54L2Q9Y4B4 1467 aa16.81■□□□□ 0.28
SRP54-210ENST00000556380 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
SRP54-210ENST00000556380 C1QBPQ07021 282 aaKnown RBP16.81■□□□□ 0.28
SRP54-210ENST00000556380 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.286e-10■■■□□ 14.9
SRP54-210ENST00000556380 AQRO60306 1485 aaKnown RBP eCLIP16.75■□□□□ 0.277e-11■■■■□ 23.2
SRP54-210ENST00000556380 TOP2BQ02880 1626 aa16.75■□□□□ 0.27
SRP54-210ENST00000556380 DNAJC5Q9H3Z4 198 aa16.75■□□□□ 0.27
SRP54-210ENST00000556380 SYNJ1O43426 1573 aa16.75■□□□□ 0.27
SRP54-210ENST00000556380 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
SRP54-210ENST00000556380 BIVM-ERCC5R4GMW8 1640 aa16.73■□□□□ 0.27
SRP54-210ENST00000556380 EIF4G3O43432 1585 aaKnown RBP16.69■□□□□ 0.26
SRP54-210ENST00000556380 ABCA10Q8WWZ4 1543 aa16.69■□□□□ 0.26
SRP54-210ENST00000556380 WDR97A6NE52 1622 aa16.65■□□□□ 0.26
SRP54-210ENST00000556380 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
SRP54-210ENST00000556380 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
SRP54-210ENST00000556380 OSCARQ8IYS5 282 aa16.6■□□□□ 0.25
SRP54-210ENST00000556380 ABCA5Q8WWZ7 1642 aa16.58■□□□□ 0.24
SRP54-210ENST00000556380 SNAPC4Q5SXM2 1469 aa16.55■□□□□ 0.24
SRP54-210ENST00000556380 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms