RNA–Protein interactions for RNA: ENST00000554028.3

TMEM55B-205, humanhuman

TSL 2

Gene TMEM55B, Length 1,118 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-205ENST00000554028 NISCHQ9Y2I1 1504 aa24.04■■□□□ 1.44
TMEM55B-205ENST00000554028 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
TMEM55B-205ENST00000554028 CHIC1Q5VXU3 224 aa22.1■■□□□ 1.13
TMEM55B-205ENST00000554028 CCDC180Q9P1Z9 1646 aa21.06■□□□□ 0.96
TMEM55B-205ENST00000554028 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
TMEM55B-205ENST00000554028 ABCC9O60706 1549 aa20.19■□□□□ 0.82
TMEM55B-205ENST00000554028 ZCCHC6Q5VYS8 1495 aaKnown RBP20.11■□□□□ 0.81
TMEM55B-205ENST00000554028 DCAF8L2P0C7V8 631 aa20.08■□□□□ 0.81
TMEM55B-205ENST00000554028 DCAF1Q9Y4B6 1507 aa19.9■□□□□ 0.78
TMEM55B-205ENST00000554028 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
TMEM55B-205ENST00000554028 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
TMEM55B-205ENST00000554028 NACADO15069 1562 aa19.74■□□□□ 0.75
TMEM55B-205ENST00000554028 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
TMEM55B-205ENST00000554028 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
TMEM55B-205ENST00000554028 SCRIBQ14160 1630 aa19.31■□□□□ 0.68
TMEM55B-205ENST00000554028 PABPN1Q86U42 306 aaKnown RBP eCLIP19.03■□□□□ 0.64
TMEM55B-205ENST00000554028 UNC13AQ9UPW8 1703 aa19.02■□□□□ 0.63
TMEM55B-205ENST00000554028 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
TMEM55B-205ENST00000554028 FOXD1Q16676 465 aa18.92■□□□□ 0.62
TMEM55B-205ENST00000554028 CECR2Q9BXF3 1484 aa18.65■□□□□ 0.58
TMEM55B-205ENST00000554028 POTEDQ86YR6 584 aa18.65■□□□□ 0.58
TMEM55B-205ENST00000554028 SUPT5HO00267 1087 aaKnown RBP18.62■□□□□ 0.57
TMEM55B-205ENST00000554028 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
TMEM55B-205ENST00000554028 RSF1Q96T23 1441 aaPredicted RBP18.54■□□□□ 0.56
TMEM55B-205ENST00000554028 MROH2BQ7Z745 1585 aa18.51■□□□□ 0.55
TMEM55B-205ENST00000554028 SMARCA4P51532 1647 aa18.49■□□□□ 0.55
TMEM55B-205ENST00000554028 EIF4G1Q04637 1599 aaKnown RBP18.44■□□□□ 0.54
TMEM55B-205ENST00000554028 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.53
TMEM55B-205ENST00000554028 SMARCA2P51531 1590 aa18.33■□□□□ 0.52
TMEM55B-205ENST00000554028 WIZO95785 1651 aa18.31■□□□□ 0.52
TMEM55B-205ENST00000554028 ATAD2BQ9ULI0 1458 aa18.31■□□□□ 0.52
TMEM55B-205ENST00000554028 PEG3Q9GZU2 1588 aa18.3■□□□□ 0.52
TMEM55B-205ENST00000554028 NCAPD3P42695 1498 aa18.23■□□□□ 0.51
TMEM55B-205ENST00000554028 CC2D2AQ9P2K1 1620 aa18.23■□□□□ 0.51
TMEM55B-205ENST00000554028 BAZ1BQ9UIG0 1483 aaKnown RBP18.22■□□□□ 0.51
TMEM55B-205ENST00000554028 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
TMEM55B-205ENST00000554028 HMGXB3Q12766 1538 aa18.14■□□□□ 0.49
TMEM55B-205ENST00000554028 MSH5O43196 834 aa18.03■□□□□ 0.48
TMEM55B-205ENST00000554028 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
TMEM55B-205ENST00000554028 CADPSQ9ULU8 1353 aa17.78■□□□□ 0.44
TMEM55B-205ENST00000554028 CFTRP13569 1480 aa17.73■□□□□ 0.43
TMEM55B-205ENST00000554028 LAMC3Q9Y6N6 1575 aa17.64■□□□□ 0.41
TMEM55B-205ENST00000554028 PDS5BQ9NTI5 1447 aa17.6■□□□□ 0.41
TMEM55B-205ENST00000554028 NESP48681 1621 aa17.59■□□□□ 0.41
TMEM55B-205ENST00000554028 PIAS4Q8N2W9 510 aaPredicted RBP17.58■□□□□ 0.4
TMEM55B-205ENST00000554028 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
TMEM55B-205ENST00000554028 FANCD2Q9BXW9 1451 aa17.54■□□□□ 0.4
TMEM55B-205ENST00000554028 WRNQ14191 1432 aaPredicted RBP eCLIP17.51■□□□□ 0.39
TMEM55B-205ENST00000554028 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
TMEM55B-205ENST00000554028 ABCC8Q09428 1581 aa17.48■□□□□ 0.39
TMEM55B-205ENST00000554028 CEP164Q9UPV0 1460 aa17.47■□□□□ 0.39
TMEM55B-205ENST00000554028 ERCC6Q03468 1493 aa17.43■□□□□ 0.38
TMEM55B-205ENST00000554028 TOP2BQ02880 1626 aa17.33■□□□□ 0.37
TMEM55B-205ENST00000554028 CUX1P39880 1505 aa17.33■□□□□ 0.37
TMEM55B-205ENST00000554028 KIF21AQ7Z4S6 1674 aa17.32■□□□□ 0.36
TMEM55B-205ENST00000554028 SYNJ1O43426 1573 aa17.32■□□□□ 0.36
TMEM55B-205ENST00000554028 MRC2Q9UBG0 1479 aa17.32■□□□□ 0.36
TMEM55B-205ENST00000554028 DNMBPQ6XZF7 1577 aa17.3■□□□□ 0.36
TMEM55B-205ENST00000554028 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
TMEM55B-205ENST00000554028 BIVM-ERCC5R4GMW8 1640 aa17.29■□□□□ 0.36
TMEM55B-205ENST00000554028 URB2Q14146 1524 aaKnown RBP17.28■□□□□ 0.36
TMEM55B-205ENST00000554028 DNAJC5Q9H3Z4 198 aa17.27■□□□□ 0.36
TMEM55B-205ENST00000554028 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
TMEM55B-205ENST00000554028 SOGA1O94964 1423 aa17.2■□□□□ 0.34
TMEM55B-205ENST00000554028 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
TMEM55B-205ENST00000554028 WDR62O43379 1518 aa17.19■□□□□ 0.34
TMEM55B-205ENST00000554028 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
TMEM55B-205ENST00000554028 EEA1Q15075 1411 aa17.17■□□□□ 0.34
TMEM55B-205ENST00000554028 PLPPR3Q6T4P5 718 aa17.14■□□□□ 0.33
TMEM55B-205ENST00000554028 PPP6R1Q9UPN7 881 aa17.14■□□□□ 0.33
TMEM55B-205ENST00000554028 THOC2Q8NI27 1593 aaKnown RBP17.14■□□□□ 0.33
TMEM55B-205ENST00000554028 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
TMEM55B-205ENST00000554028 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
TMEM55B-205ENST00000554028 CSRNP3Q8WYN3 585 aa17.11■□□□□ 0.33
TMEM55B-205ENST00000554028 CUX2O14529 1486 aa17.1■□□□□ 0.33
TMEM55B-205ENST00000554028 IFT140Q96RY7 1462 aa17.1■□□□□ 0.33
TMEM55B-205ENST00000554028 ABCA10Q8WWZ4 1543 aa17.09■□□□□ 0.33
TMEM55B-205ENST00000554028 ADRA2BP18089 450 aa17.08■□□□□ 0.32
TMEM55B-205ENST00000554028 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
TMEM55B-205ENST00000554028 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.32
TMEM55B-205ENST00000554028 TARBP1Q13395 1621 aaKnown RBP16.99■□□□□ 0.31
TMEM55B-205ENST00000554028 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
TMEM55B-205ENST00000554028 IGF1RP08069 1367 aa16.97■□□□□ 0.31
TMEM55B-205ENST00000554028 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
TMEM55B-205ENST00000554028 WDR97A6NE52 1622 aa16.94■□□□□ 0.3
TMEM55B-205ENST00000554028 AQRO60306 1485 aaKnown RBP eCLIP16.93■□□□□ 0.34e-8■■■■■ 34.1
TMEM55B-205ENST00000554028 EHMT2Q96KQ7 1210 aa16.93■□□□□ 0.3
TMEM55B-205ENST00000554028 ZNF608Q9ULD9 1512 aaPredicted RBP16.91■□□□□ 0.3
TMEM55B-205ENST00000554028 GRIN2BQ13224 1484 aa16.91■□□□□ 0.3
TMEM55B-205ENST00000554028 CARMIL1Q5VZK9 1371 aa16.9■□□□□ 0.3
TMEM55B-205ENST00000554028 UBTFP17480 764 aaKnown RBP16.9■□□□□ 0.3
TMEM55B-205ENST00000554028 ABCA5Q8WWZ7 1642 aa16.89■□□□□ 0.29
TMEM55B-205ENST00000554028 ERICH3Q5RHP9 1530 aa16.89■□□□□ 0.29
TMEM55B-205ENST00000554028 GOLGA3Q08378 1498 aa16.87■□□□□ 0.29
TMEM55B-205ENST00000554028 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
TMEM55B-205ENST00000554028 KIF21BO75037 1637 aa16.85■□□□□ 0.29
TMEM55B-205ENST00000554028 RAPGEF2Q9Y4G8 1499 aa16.84■□□□□ 0.29
TMEM55B-205ENST00000554028 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.28
TMEM55B-205ENST00000554028 CUL7Q14999 1698 aa16.81■□□□□ 0.28
TMEM55B-205ENST00000554028 FHAD1B1AJZ9 1412 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms