RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 AEBP2Q6ZN18 517 aaPredicted RBP23.01■■□□□ 1.27
DEPDC4-207ENST00000549249 CHIC1Q5VXU3 224 aa21.69■■□□□ 1.06
DEPDC4-207ENST00000549249 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
DEPDC4-207ENST00000549249 PHF23Q9BUL5 403 aaPredicted RBP19.42■□□□□ 0.7
DEPDC4-207ENST00000549249 NISCHQ9Y2I1 1504 aa18.9■□□□□ 0.62
DEPDC4-207ENST00000549249 FOXD1Q16676 465 aa18.37■□□□□ 0.53
DEPDC4-207ENST00000549249 MSH5O43196 834 aa17.29■□□□□ 0.36
DEPDC4-207ENST00000549249 PLPPR3Q6T4P5 718 aa17.26■□□□□ 0.35
DEPDC4-207ENST00000549249 POTEDQ86YR6 584 aa17.18■□□□□ 0.34
DEPDC4-207ENST00000549249 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
DEPDC4-207ENST00000549249 PPP6R1Q9UPN7 881 aa17.01■□□□□ 0.31
DEPDC4-207ENST00000549249 ADRA2BP18089 450 aa16.95■□□□□ 0.3
DEPDC4-207ENST00000549249 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
DEPDC4-207ENST00000549249 ZCCHC6Q5VYS8 1495 aaKnown RBP15.85■□□□□ 0.13
DEPDC4-207ENST00000549249 ABCC9O60706 1549 aa15.82■□□□□ 0.12
DEPDC4-207ENST00000549249 DCAF1Q9Y4B6 1507 aa15.63■□□□□ 0.09
DEPDC4-207ENST00000549249 MAPK8IP2Q13387 824 aaPredicted RBP15.63■□□□□ 0.09
DEPDC4-207ENST00000549249 DMRT2Q9Y5R5 561 aa15.58■□□□□ 0.08
DEPDC4-207ENST00000549249 SCAF1Q9H7N4 1312 aaKnown RBP15.57■□□□□ 0.08
DEPDC4-207ENST00000549249 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
DEPDC4-207ENST00000549249 DCAF8L2P0C7V8 631 aa15.5■□□□□ 0.07
DEPDC4-207ENST00000549249 NACADO15069 1562 aa15.45■□□□□ 0.06
DEPDC4-207ENST00000549249 RB1CC1Q8TDY2 1594 aa15.36■□□□□ 0.05
DEPDC4-207ENST00000549249 SHROOM4Q9ULL8 1493 aa15.23■□□□□ 0.03
DEPDC4-207ENST00000549249 SCRIBQ14160 1630 aa15.21■□□□□ 0.03
DEPDC4-207ENST00000549249 UNC13AQ9UPW8 1703 aa15.15■□□□□ 0.02
DEPDC4-207ENST00000549249 PPP4R3CPQ6ZMV5 832 aa15.1■□□□□ 0.01
DEPDC4-207ENST00000549249 DCAF8L1A6NGE4 600 aa14.97□□□□□ -0.01
DEPDC4-207ENST00000549249 CACNB1Q02641 598 aaPredicted RBP14.96□□□□□ -0.01
DEPDC4-207ENST00000549249 BICRAQ9NZM4 1560 aa14.96□□□□□ -0.01
DEPDC4-207ENST00000549249 HOXD11P31277 338 aaPredicted RBP14.94□□□□□ -0.02
DEPDC4-207ENST00000549249 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
DEPDC4-207ENST00000549249 CNKSR2Q8WXI2 1034 aa14.87□□□□□ -0.03
DEPDC4-207ENST00000549249 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
DEPDC4-207ENST00000549249 RNF216Q9NWF9 866 aaPredicted RBP14.78□□□□□ -0.04
DEPDC4-207ENST00000549249 RNF39Q9H2S5 420 aa14.71□□□□□ -0.05
DEPDC4-207ENST00000549249 CECR2Q9BXF3 1484 aa14.69□□□□□ -0.06
DEPDC4-207ENST00000549249 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
DEPDC4-207ENST00000549249 BAZ1AQ9NRL2 1556 aaPredicted RBP14.59□□□□□ -0.07
DEPDC4-207ENST00000549249 NCBP3Q53F19 620 aaKnown RBP14.58□□□□□ -0.08
DEPDC4-207ENST00000549249 SMARCA4P51532 1647 aa14.58□□□□□ -0.08
DEPDC4-207ENST00000549249 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
DEPDC4-207ENST00000549249 SUPT5HO00267 1087 aaKnown RBP14.52□□□□□ -0.09
DEPDC4-207ENST00000549249 C1QBPQ07021 282 aaKnown RBP14.52□□□□□ -0.09
DEPDC4-207ENST00000549249 WIZO95785 1651 aa14.49□□□□□ -0.09
DEPDC4-207ENST00000549249 EIF4G1Q04637 1599 aaKnown RBP14.48□□□□□ -0.09
DEPDC4-207ENST00000549249 KCNA4P22459 653 aa14.45□□□□□ -0.1
DEPDC4-207ENST00000549249 PEG3Q9GZU2 1588 aa14.42□□□□□ -0.1
DEPDC4-207ENST00000549249 NPM3O75607 178 aaKnown RBP14.36□□□□□ -0.11
DEPDC4-207ENST00000549249 ATAD2BQ9ULI0 1458 aa14.35□□□□□ -0.11
DEPDC4-207ENST00000549249 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
DEPDC4-207ENST00000549249 TOP2AP11388 1531 aaKnown RBP14.32□□□□□ -0.12
DEPDC4-207ENST00000549249 CC2D2AQ9P2K1 1620 aa14.32□□□□□ -0.12
DEPDC4-207ENST00000549249 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.25□□□□□ -0.13
DEPDC4-207ENST00000549249 HMGXB3Q12766 1538 aa14.25□□□□□ -0.13
DEPDC4-207ENST00000549249 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
DEPDC4-207ENST00000549249 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
DEPDC4-207ENST00000549249 CCDC88BA6NC98 1476 aa14.14□□□□□ -0.15
DEPDC4-207ENST00000549249 PRDM2Q13029 1718 aa13.91□□□□□ -0.18
DEPDC4-207ENST00000549249 U3KPZ7 1027 aaPredicted RBP13.9□□□□□ -0.18
DEPDC4-207ENST00000549249 CFTRP13569 1480 aa13.89□□□□□ -0.19
DEPDC4-207ENST00000549249 CADPSQ9ULU8 1353 aa13.84□□□□□ -0.19
DEPDC4-207ENST00000549249 NESP48681 1621 aa13.83□□□□□ -0.2
DEPDC4-207ENST00000549249 ABCC8Q09428 1581 aa13.81□□□□□ -0.2
DEPDC4-207ENST00000549249 LAMC3Q9Y6N6 1575 aa13.81□□□□□ -0.2
DEPDC4-207ENST00000549249 DNAJC5Q9H3Z4 198 aa13.8□□□□□ -0.2
DEPDC4-207ENST00000549249 CAPN15O75808 1086 aa13.77□□□□□ -0.21
DEPDC4-207ENST00000549249 SPINK5Q9NQ38 1064 aaPredicted RBP13.75□□□□□ -0.21
DEPDC4-207ENST00000549249 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
DEPDC4-207ENST00000549249 ERCC6Q03468 1493 aa13.73□□□□□ -0.21
DEPDC4-207ENST00000549249 DSG3P32926 999 aa13.72□□□□□ -0.21
DEPDC4-207ENST00000549249 FANCD2Q9BXW9 1451 aa13.72□□□□□ -0.21
DEPDC4-207ENST00000549249 SYNJ1O43426 1573 aa13.71□□□□□ -0.21
DEPDC4-207ENST00000549249 KIF21AQ7Z4S6 1674 aa13.71□□□□□ -0.21
DEPDC4-207ENST00000549249 WRNQ14191 1432 aaPredicted RBP eCLIP13.7□□□□□ -0.22
DEPDC4-207ENST00000549249 CUX2O14529 1486 aa13.68□□□□□ -0.22
DEPDC4-207ENST00000549249 BIVM-ERCC5R4GMW8 1640 aa13.68□□□□□ -0.22
DEPDC4-207ENST00000549249 CUX1P39880 1505 aa13.67□□□□□ -0.22
DEPDC4-207ENST00000549249 TOP2BQ02880 1626 aa13.66□□□□□ -0.22
DEPDC4-207ENST00000549249 PDS5BQ9NTI5 1447 aa13.65□□□□□ -0.22
DEPDC4-207ENST00000549249 CEP164Q9UPV0 1460 aa13.65□□□□□ -0.22
DEPDC4-207ENST00000549249 SLC4A2P04920 1241 aa13.64□□□□□ -0.23
DEPDC4-207ENST00000549249 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
DEPDC4-207ENST00000549249 DNMBPQ6XZF7 1577 aa13.59□□□□□ -0.23
DEPDC4-207ENST00000549249 URB2Q14146 1524 aaKnown RBP13.59□□□□□ -0.23
DEPDC4-207ENST00000549249 TOPBP1Q92547 1522 aa13.57□□□□□ -0.24
DEPDC4-207ENST00000549249 APLP2Q06481 763 aa13.55□□□□□ -0.24
DEPDC4-207ENST00000549249 MRC2Q9UBG0 1479 aa13.54□□□□□ -0.24
DEPDC4-207ENST00000549249 THOC2Q8NI27 1593 aaKnown RBP13.54□□□□□ -0.24
DEPDC4-207ENST00000549249 FGD5Q6ZNL6 1462 aa13.52□□□□□ -0.25
DEPDC4-207ENST00000549249 TRHP20396 242 aaPredicted RBP13.5□□□□□ -0.25
DEPDC4-207ENST00000549249 WDR62O43379 1518 aa13.49□□□□□ -0.25
DEPDC4-207ENST00000549249 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
DEPDC4-207ENST00000549249 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
DEPDC4-207ENST00000549249 POLA1P09884 1462 aaPredicted RBP13.48□□□□□ -0.25
DEPDC4-207ENST00000549249 SOGA1O94964 1423 aa13.48□□□□□ -0.25
DEPDC4-207ENST00000549249 ZNF219Q9P2Y4 722 aaPredicted RBP13.47□□□□□ -0.25
DEPDC4-207ENST00000549249 RUSC2Q8N2Y8 1516 aa13.47□□□□□ -0.25
DEPDC4-207ENST00000549249 WDR97A6NE52 1622 aa13.46□□□□□ -0.26
DEPDC4-207ENST00000549249 POTEHQ6S545 545 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms