RNA–Protein interactions for RNA: ENST00000546882.5

RFX4-207, Transcript of regulatory factor X4, humanhuman

TSL 3

Gene RFX4, Length 660 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-207ENST00000546882 AEBP2Q6ZN18 517 aaPredicted RBP26.05■■□□□ 1.76
RFX4-207ENST00000546882 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
RFX4-207ENST00000546882 NISCHQ9Y2I1 1504 aa22.25■■□□□ 1.15
RFX4-207ENST00000546882 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
RFX4-207ENST00000546882 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
RFX4-207ENST00000546882 ABCC9O60706 1549 aa20.7■□□□□ 0.9
RFX4-207ENST00000546882 FOXD1Q16676 465 aa20.57■□□□□ 0.88
RFX4-207ENST00000546882 PLPPR3Q6T4P5 718 aa20.3■□□□□ 0.84
RFX4-207ENST00000546882 CCDC180Q9P1Z9 1646 aa20.17■□□□□ 0.82
RFX4-207ENST00000546882 DNAJC5BQ9UF47 199 aa19.99■□□□□ 0.79
RFX4-207ENST00000546882 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
RFX4-207ENST00000546882 ADRA2BP18089 450 aa19.58■□□□□ 0.72
RFX4-207ENST00000546882 RB1CC1Q8TDY2 1594 aa19.44■□□□□ 0.7
RFX4-207ENST00000546882 PIAS4Q8N2W9 510 aaPredicted RBP19.34■□□□□ 0.69
RFX4-207ENST00000546882 NACADO15069 1562 aa19.2■□□□□ 0.66
RFX4-207ENST00000546882 PABPN1Q86U42 306 aaKnown RBP eCLIP19.2■□□□□ 0.66
RFX4-207ENST00000546882 UNC13AQ9UPW8 1703 aa19.07■□□□□ 0.64
RFX4-207ENST00000546882 MSH5O43196 834 aa19.04■□□□□ 0.64
RFX4-207ENST00000546882 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
RFX4-207ENST00000546882 DCAF8L2P0C7V8 631 aa18.94■□□□□ 0.62
RFX4-207ENST00000546882 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
RFX4-207ENST00000546882 DNAJC5Q9H3Z4 198 aa18.71■□□□□ 0.59
RFX4-207ENST00000546882 CECR2Q9BXF3 1484 aa18.71■□□□□ 0.59
RFX4-207ENST00000546882 CC2D2AQ9P2K1 1620 aa18.68■□□□□ 0.58
RFX4-207ENST00000546882 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
RFX4-207ENST00000546882 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
RFX4-207ENST00000546882 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
RFX4-207ENST00000546882 SCRIBQ14160 1630 aa18.34■□□□□ 0.53
RFX4-207ENST00000546882 ZCCHC6Q5VYS8 1495 aaKnown RBP18.32■□□□□ 0.52
RFX4-207ENST00000546882 CUX2O14529 1486 aa18.05■□□□□ 0.48
RFX4-207ENST00000546882 PPP4R3CPQ6ZMV5 832 aa17.87■□□□□ 0.45
RFX4-207ENST00000546882 ERCC6Q03468 1493 aa17.86■□□□□ 0.45
RFX4-207ENST00000546882 SCAF1Q9H7N4 1312 aaKnown RBP17.84■□□□□ 0.45
RFX4-207ENST00000546882 MAPK8IP2Q13387 824 aaPredicted RBP17.83■□□□□ 0.44
RFX4-207ENST00000546882 POTEDQ86YR6 584 aa17.82■□□□□ 0.44
RFX4-207ENST00000546882 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
RFX4-207ENST00000546882 NESP48681 1621 aa17.66■□□□□ 0.42
RFX4-207ENST00000546882 ATAD2BQ9ULI0 1458 aa17.63■□□□□ 0.41
RFX4-207ENST00000546882 DMRT2Q9Y5R5 561 aa17.62■□□□□ 0.41
RFX4-207ENST00000546882 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
RFX4-207ENST00000546882 THOC2Q8NI27 1593 aaKnown RBP17.57■□□□□ 0.4
RFX4-207ENST00000546882 HMGXB3Q12766 1538 aa17.56■□□□□ 0.4
RFX4-207ENST00000546882 SMARCA2P51531 1590 aa17.51■□□□□ 0.39
RFX4-207ENST00000546882 SMARCA4P51532 1647 aa17.46■□□□□ 0.39
RFX4-207ENST00000546882 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
RFX4-207ENST00000546882 CNKSR2Q8WXI2 1034 aa17.41■□□□□ 0.38
RFX4-207ENST00000546882 KIF21AQ7Z4S6 1674 aa17.39■□□□□ 0.37
RFX4-207ENST00000546882 BAZ1BQ9UIG0 1483 aaKnown RBP17.38■□□□□ 0.37
RFX4-207ENST00000546882 PEG3Q9GZU2 1588 aa17.32■□□□□ 0.36
RFX4-207ENST00000546882 PDS5BQ9NTI5 1447 aa17.31■□□□□ 0.36
RFX4-207ENST00000546882 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
RFX4-207ENST00000546882 BAZ1AQ9NRL2 1556 aaPredicted RBP17.28■□□□□ 0.36
RFX4-207ENST00000546882 MRC2Q9UBG0 1479 aa17.21■□□□□ 0.35
RFX4-207ENST00000546882 WDR62O43379 1518 aa17.21■□□□□ 0.34
RFX4-207ENST00000546882 KCNA4P22459 653 aa17.19■□□□□ 0.34
RFX4-207ENST00000546882 CADPSQ9ULU8 1353 aa17.18■□□□□ 0.34
RFX4-207ENST00000546882 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
RFX4-207ENST00000546882 HOXD11P31277 338 aaPredicted RBP17.14■□□□□ 0.33
RFX4-207ENST00000546882 OSCARQ8IYS5 282 aa17.14■□□□□ 0.33
RFX4-207ENST00000546882 RNF216Q9NWF9 866 aaPredicted RBP17.14■□□□□ 0.33
RFX4-207ENST00000546882 NPM3O75607 178 aaKnown RBP17.09■□□□□ 0.33
RFX4-207ENST00000546882 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.32
RFX4-207ENST00000546882 RIMBP3CA6NJZ7 1639 aa16.99■□□□□ 0.31
RFX4-207ENST00000546882 RIMBP3BA6NNM3 1639 aa16.99■□□□□ 0.31
RFX4-207ENST00000546882 RIMBP3Q9UFD9 1639 aa16.99■□□□□ 0.31
RFX4-207ENST00000546882 FANCD2Q9BXW9 1451 aa16.97■□□□□ 0.31
RFX4-207ENST00000546882 WIZO95785 1651 aa16.91■□□□□ 0.3
RFX4-207ENST00000546882 URB2Q14146 1524 aaKnown RBP16.9■□□□□ 0.3
RFX4-207ENST00000546882 CFTRP13569 1480 aa16.88■□□□□ 0.29
RFX4-207ENST00000546882 ARHGEF11O15085 1522 aa16.88■□□□□ 0.29
RFX4-207ENST00000546882 DCAF8L1A6NGE4 600 aa16.88■□□□□ 0.29
RFX4-207ENST00000546882 CYB5RLQ6IPT4 315 aa16.78■□□□□ 0.28
RFX4-207ENST00000546882 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
RFX4-207ENST00000546882 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
RFX4-207ENST00000546882 IFT140Q96RY7 1462 aa16.71■□□□□ 0.27
RFX4-207ENST00000546882 ARAP1Q96P48 1450 aa16.69■□□□□ 0.26
RFX4-207ENST00000546882 PRDM2Q13029 1718 aa16.64■□□□□ 0.25
RFX4-207ENST00000546882 TOP2AP11388 1531 aaKnown RBP16.63■□□□□ 0.25
RFX4-207ENST00000546882 EIF4G3O43432 1585 aaKnown RBP16.63■□□□□ 0.25
RFX4-207ENST00000546882 CHD1O14646 1710 aa16.62■□□□□ 0.25
RFX4-207ENST00000546882 TOPBP1Q92547 1522 aa16.6■□□□□ 0.25
RFX4-207ENST00000546882 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
RFX4-207ENST00000546882 AQRO60306 1485 aaKnown RBP eCLIP16.54■□□□□ 0.24
RFX4-207ENST00000546882 TARBP1Q13395 1621 aaKnown RBP16.52■□□□□ 0.23
RFX4-207ENST00000546882 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
RFX4-207ENST00000546882 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
RFX4-207ENST00000546882 FBLN2P98095 1184 aa16.48■□□□□ 0.23
RFX4-207ENST00000546882 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
RFX4-207ENST00000546882 CLASP1Q7Z460 1538 aa16.43■□□□□ 0.22
RFX4-207ENST00000546882 POLA1P09884 1462 aaPredicted RBP16.41■□□□□ 0.22
RFX4-207ENST00000546882 TDRD9Q8NDG6 1382 aaKnown RBP16.37■□□□□ 0.21
RFX4-207ENST00000546882 RAD54L2Q9Y4B4 1467 aa16.36■□□□□ 0.21
RFX4-207ENST00000546882 SNAPC4Q5SXM2 1469 aa16.34■□□□□ 0.21
RFX4-207ENST00000546882 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.33■□□□□ 0.2
RFX4-207ENST00000546882 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
RFX4-207ENST00000546882 RNF39Q9H2S5 420 aa16.31■□□□□ 0.2
RFX4-207ENST00000546882 SOGA1O94964 1423 aa16.3■□□□□ 0.2
RFX4-207ENST00000546882 SLC4A1APQ9BWU0 796 aaKnown RBP16.3■□□□□ 0.2
RFX4-207ENST00000546882 CHMP7Q8WUX9 453 aaPredicted RBP16.29■□□□□ 0.2
RFX4-207ENST00000546882 GAPVD1Q14C86 1478 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms