RNA–Protein interactions for RNA: ENST00000546386.1

CCDC38-202, Transcript of coiled-coil domain containing 38, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC38, Length 2,599 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-202ENST00000546386 NISCHQ9Y2I1 1504 aa25.98■■□□□ 1.75
CCDC38-202ENST00000546386 DCAF8L2P0C7V8 631 aa22.45■■□□□ 1.19
CCDC38-202ENST00000546386 CHIC1Q5VXU3 224 aa22.34■■□□□ 1.17
CCDC38-202ENST00000546386 AEBP2Q6ZN18 517 aaPredicted RBP22.33■■□□□ 1.17
CCDC38-202ENST00000546386 SHROOM4Q9ULL8 1493 aa22.32■■□□□ 1.16
CCDC38-202ENST00000546386 CCDC180Q9P1Z9 1646 aa22.09■■□□□ 1.13
CCDC38-202ENST00000546386 ZCCHC6Q5VYS8 1495 aaKnown RBP21.79■■□□□ 1.08
CCDC38-202ENST00000546386 ABCC9O60706 1549 aa21.6■■□□□ 1.05
CCDC38-202ENST00000546386 SUPT5HO00267 1087 aaKnown RBP21.59■■□□□ 1.05
CCDC38-202ENST00000546386 SCRIBQ14160 1630 aa21.06■□□□□ 0.96
CCDC38-202ENST00000546386 DCAF1Q9Y4B6 1507 aa21.02■□□□□ 0.96
CCDC38-202ENST00000546386 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.91
CCDC38-202ENST00000546386 NACADO15069 1562 aa20.68■□□□□ 0.9
CCDC38-202ENST00000546386 MYO15BQ96JP2 1530 aa20.57■□□□□ 0.88
CCDC38-202ENST00000546386 RB1CC1Q8TDY2 1594 aa20.56■□□□□ 0.88
CCDC38-202ENST00000546386 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
CCDC38-202ENST00000546386 RSF1Q96T23 1441 aaPredicted RBP20.44■□□□□ 0.86
CCDC38-202ENST00000546386 MROH2BQ7Z745 1585 aa20.31■□□□□ 0.84
CCDC38-202ENST00000546386 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
CCDC38-202ENST00000546386 EHMT2Q96KQ7 1210 aa20.18■□□□□ 0.82
CCDC38-202ENST00000546386 WIZO95785 1651 aa20.17■□□□□ 0.82
CCDC38-202ENST00000546386 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
CCDC38-202ENST00000546386 FAM9AQ8IZU1 332 aaPredicted RBP20.07■□□□□ 0.8
CCDC38-202ENST00000546386 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
CCDC38-202ENST00000546386 TRIM41Q8WV44 630 aa19.96■□□□□ 0.79
CCDC38-202ENST00000546386 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
CCDC38-202ENST00000546386 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
CCDC38-202ENST00000546386 SMARCA4P51532 1647 aa19.89■□□□□ 0.77
CCDC38-202ENST00000546386 CCDC88BA6NC98 1476 aa19.74■□□□□ 0.75
CCDC38-202ENST00000546386 TOP2AP11388 1531 aaKnown RBP19.64■□□□□ 0.74
CCDC38-202ENST00000546386 ABCC8Q09428 1581 aa19.62■□□□□ 0.73
CCDC38-202ENST00000546386 ATAD2BQ9ULI0 1458 aa19.61■□□□□ 0.73
CCDC38-202ENST00000546386 SMARCA2P51531 1590 aa19.59■□□□□ 0.73
CCDC38-202ENST00000546386 BAZ1BQ9UIG0 1483 aaKnown RBP19.56■□□□□ 0.72
CCDC38-202ENST00000546386 EIF4G1Q04637 1599 aaKnown RBP19.5■□□□□ 0.71
CCDC38-202ENST00000546386 DNAJC5BQ9UF47 199 aa19.43■□□□□ 0.7
CCDC38-202ENST00000546386 PPARGC1BQ86YN6 1023 aaKnown RBP19.41■□□□□ 0.7
CCDC38-202ENST00000546386 PCGF6Q9BYE7 350 aa19.38■□□□□ 0.69
CCDC38-202ENST00000546386 PEG3Q9GZU2 1588 aa19.34■□□□□ 0.69
CCDC38-202ENST00000546386 SOGA1O94964 1423 aa19.33■□□□□ 0.69
CCDC38-202ENST00000546386 RANGAP1P46060 587 aaPredicted RBP19.32■□□□□ 0.68
CCDC38-202ENST00000546386 RUSC2Q8N2Y8 1516 aa19.31■□□□□ 0.68
CCDC38-202ENST00000546386 TTBK1Q5TCY1 1321 aaPredicted RBP19.29■□□□□ 0.68
CCDC38-202ENST00000546386 NCAPD3P42695 1498 aa19.23■□□□□ 0.67
CCDC38-202ENST00000546386 CC2D2AQ9P2K1 1620 aa19.23■□□□□ 0.67
CCDC38-202ENST00000546386 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.67
CCDC38-202ENST00000546386 UBTFP17480 764 aaKnown RBP19.18■□□□□ 0.66
CCDC38-202ENST00000546386 SYNJ1O43426 1573 aa19.14■□□□□ 0.65
CCDC38-202ENST00000546386 CSRNP3Q8WYN3 585 aa19.11■□□□□ 0.65
CCDC38-202ENST00000546386 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
CCDC38-202ENST00000546386 NESP48681 1621 aa19.04■□□□□ 0.64
CCDC38-202ENST00000546386 CADPSQ9ULU8 1353 aa18.95■□□□□ 0.62
CCDC38-202ENST00000546386 CFTRP13569 1480 aa18.95■□□□□ 0.62
CCDC38-202ENST00000546386 CUX1P39880 1505 aa18.9■□□□□ 0.62
CCDC38-202ENST00000546386 TRIM26Q12899 539 aaPredicted RBP18.85■□□□□ 0.61
CCDC38-202ENST00000546386 CEP162Q5TB80 1403 aa18.83■□□□□ 0.61
CCDC38-202ENST00000546386 RAPGEF2Q9Y4G8 1499 aa18.82■□□□□ 0.6
CCDC38-202ENST00000546386 TOP2BQ02880 1626 aa18.8■□□□□ 0.6
CCDC38-202ENST00000546386 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
CCDC38-202ENST00000546386 RAD54L2Q9Y4B4 1467 aa18.73■□□□□ 0.59
CCDC38-202ENST00000546386 GOLGA3Q08378 1498 aa18.73■□□□□ 0.59
CCDC38-202ENST00000546386 TNIKQ9UKE5 1360 aa18.72■□□□□ 0.59
CCDC38-202ENST00000546386 CUX2O14529 1486 aa18.71■□□□□ 0.59
CCDC38-202ENST00000546386 EEA1Q15075 1411 aa18.7■□□□□ 0.58
CCDC38-202ENST00000546386 FGD5Q6ZNL6 1462 aa18.7■□□□□ 0.58
CCDC38-202ENST00000546386 P3H3Q8IVL6 736 aa18.67■□□□□ 0.58
CCDC38-202ENST00000546386 BIVM-ERCC5R4GMW8 1640 aa18.66■□□□□ 0.58
CCDC38-202ENST00000546386 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
CCDC38-202ENST00000546386 KIF27Q86VH2 1401 aa18.65■□□□□ 0.58
CCDC38-202ENST00000546386 HRCP23327 699 aa18.64■□□□□ 0.57
CCDC38-202ENST00000546386 TDRD9Q8NDG6 1382 aaKnown RBP18.63■□□□□ 0.57
CCDC38-202ENST00000546386 CLIP1P30622 1438 aa18.62■□□□□ 0.57
CCDC38-202ENST00000546386 IGF1RP08069 1367 aa18.59■□□□□ 0.57
CCDC38-202ENST00000546386 ATP1B4Q9UN42 357 aaPredicted RBP18.57■□□□□ 0.56
CCDC38-202ENST00000546386 URB2Q14146 1524 aaKnown RBP18.56■□□□□ 0.56
CCDC38-202ENST00000546386 TOPBP1Q92547 1522 aa18.56■□□□□ 0.56
CCDC38-202ENST00000546386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
CCDC38-202ENST00000546386 POLA1P09884 1462 aaPredicted RBP18.55■□□□□ 0.56
CCDC38-202ENST00000546386 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
CCDC38-202ENST00000546386 CARMIL1Q5VZK9 1371 aa18.51■□□□□ 0.55
CCDC38-202ENST00000546386 PDS5BQ9NTI5 1447 aa18.5■□□□□ 0.55
CCDC38-202ENST00000546386 KIF21BO75037 1637 aa18.5■□□□□ 0.55
CCDC38-202ENST00000546386 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
CCDC38-202ENST00000546386 KIF21AQ7Z4S6 1674 aa18.49■□□□□ 0.55
CCDC38-202ENST00000546386 APLP2Q06481 763 aa18.49■□□□□ 0.55
CCDC38-202ENST00000546386 HNRNPUL2Q1KMD3 747 aaKnown RBP18.47■□□□□ 0.55
CCDC38-202ENST00000546386 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
CCDC38-202ENST00000546386 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
CCDC38-202ENST00000546386 DNMBPQ6XZF7 1577 aa18.43■□□□□ 0.54
CCDC38-202ENST00000546386 KANK4Q5T7N3 995 aaPredicted RBP18.43■□□□□ 0.54
CCDC38-202ENST00000546386 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
CCDC38-202ENST00000546386 AQRO60306 1485 aaKnown RBP eCLIP18.4■□□□□ 0.54
CCDC38-202ENST00000546386 ARAP1Q96P48 1450 aa18.38■□□□□ 0.53
CCDC38-202ENST00000546386 ARID3CA6NKF2 412 aa18.37■□□□□ 0.53
CCDC38-202ENST00000546386 ERCC6Q03468 1493 aa18.37■□□□□ 0.53
CCDC38-202ENST00000546386 FBLN2P98095 1184 aa18.36■□□□□ 0.53
CCDC38-202ENST00000546386 ITGAEP38570 1179 aa18.35■□□□□ 0.53
CCDC38-202ENST00000546386 VPS8Q8N3P4 1428 aa18.35■□□□□ 0.53
CCDC38-202ENST00000546386 CCER1Q8TC90 406 aaPredicted RBP18.34■□□□□ 0.53
CCDC38-202ENST00000546386 ABCA10Q8WWZ4 1543 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms