RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 NISCHQ9Y2I1 1504 aa37.88■■■■□ 3.65
PTPN6-222ENST00000543744 CCDC180Q9P1Z9 1646 aa32.46■■■□□ 2.79
PTPN6-222ENST00000543744 ZCCHC6Q5VYS8 1495 aaKnown RBP31.98■■■□□ 2.71
PTPN6-222ENST00000543744 SHROOM4Q9ULL8 1493 aa31.82■■■□□ 2.68
PTPN6-222ENST00000543744 DCAF8L2P0C7V8 631 aa31.32■■■□□ 2.6
PTPN6-222ENST00000543744 DCAF1Q9Y4B6 1507 aa31.2■■■□□ 2.59
PTPN6-222ENST00000543744 SUPT5HO00267 1087 aaKnown RBP31.08■■■□□ 2.57
PTPN6-222ENST00000543744 MYO15BQ96JP2 1530 aa30.45■■■□□ 2.47
PTPN6-222ENST00000543744 SCRIBQ14160 1630 aa30.19■■■□□ 2.42
PTPN6-222ENST00000543744 ABCC9O60706 1549 aa30.16■■■□□ 2.42
PTPN6-222ENST00000543744 CHIC1Q5VXU3 224 aa30.13■■■□□ 2.41
PTPN6-222ENST00000543744 NACADO15069 1562 aa30.08■■■□□ 2.41
PTPN6-222ENST00000543744 RSF1Q96T23 1441 aaPredicted RBP29.8■■■□□ 2.36
PTPN6-222ENST00000543744 RB1CC1Q8TDY2 1594 aa29.63■■■□□ 2.33
PTPN6-222ENST00000543744 CECR2Q9BXF3 1484 aa29.47■■■□□ 2.31
PTPN6-222ENST00000543744 MROH2BQ7Z745 1585 aa29.36■■■□□ 2.29
PTPN6-222ENST00000543744 WIZO95785 1651 aa29.17■■■□□ 2.26
PTPN6-222ENST00000543744 BAZ1AQ9NRL2 1556 aaPredicted RBP29.15■■■□□ 2.26
PTPN6-222ENST00000543744 LOC105371045A0A1W2PR82 267 aa29.13■■■□□ 2.25
PTPN6-222ENST00000543744 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
PTPN6-222ENST00000543744 UNC13AQ9UPW8 1703 aa29.08■■■□□ 2.25
PTPN6-222ENST00000543744 SMARCA4P51532 1647 aa28.91■■■□□ 2.22
PTPN6-222ENST00000543744 TOP2AP11388 1531 aaKnown RBP28.81■■■□□ 2.2
PTPN6-222ENST00000543744 PCGF6Q9BYE7 350 aa28.78■■■□□ 2.2
PTPN6-222ENST00000543744 BICRAQ9NZM4 1560 aa28.77■■■□□ 2.2
PTPN6-222ENST00000543744 PABPN1Q86U42 306 aaKnown RBP eCLIP28.73■■■□□ 2.19
PTPN6-222ENST00000543744 FAM9AQ8IZU1 332 aaPredicted RBP28.7■■■□□ 2.18
PTPN6-222ENST00000543744 EIF4G1Q04637 1599 aaKnown RBP28.69■■■□□ 2.18
PTPN6-222ENST00000543744 CCDC88BA6NC98 1476 aa28.63■■■□□ 2.17
PTPN6-222ENST00000543744 HRCP23327 699 aa28.61■■■□□ 2.17
PTPN6-222ENST00000543744 SMARCA2P51531 1590 aa28.6■■■□□ 2.17
PTPN6-222ENST00000543744 PEG3Q9GZU2 1588 aa28.45■■■□□ 2.14
PTPN6-222ENST00000543744 TRIM26Q12899 539 aaPredicted RBP28.43■■■□□ 2.14
PTPN6-222ENST00000543744 ABCC8Q09428 1581 aa28.36■■■□□ 2.13
PTPN6-222ENST00000543744 EHMT2Q96KQ7 1210 aa28.36■■■□□ 2.13
PTPN6-222ENST00000543744 ATAD2BQ9ULI0 1458 aa28.25■■■□□ 2.11
PTPN6-222ENST00000543744 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
PTPN6-222ENST00000543744 SOGA1O94964 1423 aa28.04■■■□□ 2.08
PTPN6-222ENST00000543744 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
PTPN6-222ENST00000543744 EEA1Q15075 1411 aa28.03■■■□□ 2.08
PTPN6-222ENST00000543744 CSRNP3Q8WYN3 585 aa27.93■■■□□ 2.06
PTPN6-222ENST00000543744 PPARGC1BQ86YN6 1023 aaKnown RBP27.92■■■□□ 2.06
PTPN6-222ENST00000543744 RUSC2Q8N2Y8 1516 aa27.89■■■□□ 2.06
PTPN6-222ENST00000543744 SYNJ1O43426 1573 aa27.86■■■□□ 2.05
PTPN6-222ENST00000543744 TNIKQ9UKE5 1360 aa27.84■■■□□ 2.05
PTPN6-222ENST00000543744 NCAPD3P42695 1498 aa27.81■■■□□ 2.04
PTPN6-222ENST00000543744 CEP162Q5TB80 1403 aa27.8■■■□□ 2.04
PTPN6-222ENST00000543744 HMGXB3Q12766 1538 aa27.79■■■□□ 2.04
PTPN6-222ENST00000543744 GOLGA3Q08378 1498 aa27.74■■■□□ 2.03
PTPN6-222ENST00000543744 UBTFP17480 764 aaKnown RBP27.74■■■□□ 2.03
PTPN6-222ENST00000543744 ZEB1P37275 1124 aaPredicted RBP27.74■■■□□ 2.03
PTPN6-222ENST00000543744 CEP164Q9UPV0 1460 aa27.64■■■□□ 2.01
PTPN6-222ENST00000543744 TOP2BQ02880 1626 aa27.62■■■□□ 2.01
PTPN6-222ENST00000543744 KIF21BO75037 1637 aa27.61■■■□□ 2.01
PTPN6-222ENST00000543744 BIVM-ERCC5R4GMW8 1640 aa27.53■■■□□ 2
PTPN6-222ENST00000543744 CFTRP13569 1480 aa27.47■■□□□ 1.99
PTPN6-222ENST00000543744 RAPGEF2Q9Y4G8 1499 aa27.4■■□□□ 1.98
PTPN6-222ENST00000543744 TTBK1Q5TCY1 1321 aaPredicted RBP27.38■■□□□ 1.97
PTPN6-222ENST00000543744 CLIP1P30622 1438 aa27.38■■□□□ 1.97
PTPN6-222ENST00000543744 CUX1P39880 1505 aa27.38■■□□□ 1.97
PTPN6-222ENST00000543744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.26■■□□□ 1.95
PTPN6-222ENST00000543744 ERICH3Q5RHP9 1530 aa27.25■■□□□ 1.95
PTPN6-222ENST00000543744 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
PTPN6-222ENST00000543744 PRDM2Q13029 1718 aa27.24■■□□□ 1.95
PTPN6-222ENST00000543744 VPS8Q8N3P4 1428 aa27.24■■□□□ 1.95
PTPN6-222ENST00000543744 CCER1Q8TC90 406 aaPredicted RBP27.23■■□□□ 1.95
PTPN6-222ENST00000543744 KIF27Q86VH2 1401 aa27.23■■□□□ 1.95
PTPN6-222ENST00000543744 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
PTPN6-222ENST00000543744 CC2D2AQ9P2K1 1620 aa27.22■■□□□ 1.95
PTPN6-222ENST00000543744 RANGAP1P46060 587 aaPredicted RBP27.14■■□□□ 1.93
PTPN6-222ENST00000543744 APLP2Q06481 763 aa27.11■■□□□ 1.93
PTPN6-222ENST00000543744 CUX2O14529 1486 aa26.98■■□□□ 1.91
PTPN6-222ENST00000543744 ARAP1Q96P48 1450 aa26.96■■□□□ 1.91
PTPN6-222ENST00000543744 FGD5Q6ZNL6 1462 aa26.95■■□□□ 1.91
PTPN6-222ENST00000543744 FANCD2Q9BXW9 1451 aa26.94■■□□□ 1.9
PTPN6-222ENST00000543744 IGF1RP08069 1367 aa26.92■■□□□ 1.9
PTPN6-222ENST00000543744 HNRNPUL2Q1KMD3 747 aaKnown RBP26.85■■□□□ 1.89
PTPN6-222ENST00000543744 CARMIL1Q5VZK9 1371 aa26.8■■□□□ 1.88
PTPN6-222ENST00000543744 ARHGAP35Q9NRY4 1499 aa26.79■■□□□ 1.88
PTPN6-222ENST00000543744 DNMBPQ6XZF7 1577 aa26.79■■□□□ 1.88
PTPN6-222ENST00000543744 NESP48681 1621 aa26.77■■□□□ 1.88
PTPN6-222ENST00000543744 TOPBP1Q92547 1522 aa26.73■■□□□ 1.87
PTPN6-222ENST00000543744 KANK4Q5T7N3 995 aaPredicted RBP26.71■■□□□ 1.87
PTPN6-222ENST00000543744 POLA1P09884 1462 aaPredicted RBP26.68■■□□□ 1.86
PTPN6-222ENST00000543744 ABCA10Q8WWZ4 1543 aa26.68■■□□□ 1.86
PTPN6-222ENST00000543744 LAMC3Q9Y6N6 1575 aa26.68■■□□□ 1.86
PTPN6-222ENST00000543744 RAD54L2Q9Y4B4 1467 aa26.67■■□□□ 1.86
PTPN6-222ENST00000543744 RRBP1Q9P2E9 1410 aaKnown RBP26.56■■□□□ 1.84
PTPN6-222ENST00000543744 URB2Q14146 1524 aaKnown RBP26.54■■□□□ 1.84
PTPN6-222ENST00000543744 PDS5BQ9NTI5 1447 aa26.52■■□□□ 1.84
PTPN6-222ENST00000543744 MAP3K1Q13233 1512 aa26.5■■□□□ 1.83
PTPN6-222ENST00000543744 CUL7Q14999 1698 aa26.5■■□□□ 1.83
PTPN6-222ENST00000543744 DIEXFQ68CQ4 756 aaKnown RBP26.49■■□□□ 1.83
PTPN6-222ENST00000543744 TIAM1Q13009 1591 aa26.47■■□□□ 1.83
PTPN6-222ENST00000543744 FHAD1B1AJZ9 1412 aa26.47■■□□□ 1.83
PTPN6-222ENST00000543744 CCNB3Q8WWL7 1395 aa26.45■■□□□ 1.83
PTPN6-222ENST00000543744 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
PTPN6-222ENST00000543744 WDR97A6NE52 1622 aa26.43■■□□□ 1.82
PTPN6-222ENST00000543744 ZNF316A6NFI3 1004 aaPredicted RBP26.43■■□□□ 1.82
PTPN6-222ENST00000543744 EFCAB5A4FU69 1503 aa26.39■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms