RNA–Protein interactions for RNA: ENST00000541461.5

PHACTR3-209, Transcript of phosphatase and actin regulator 3, humanhuman

TSL 2 BASIC

Gene PHACTR3, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR3-209ENST00000541461 NISCHQ9Y2I1 1504 aa22.22■■□□□ 1.15
PHACTR3-209ENST00000541461 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
PHACTR3-209ENST00000541461 ABCC9O60706 1549 aa18.8■□□□□ 0.6
PHACTR3-209ENST00000541461 DCAF8L2P0C7V8 631 aa18.65■□□□□ 0.58
PHACTR3-209ENST00000541461 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
PHACTR3-209ENST00000541461 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
PHACTR3-209ENST00000541461 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
PHACTR3-209ENST00000541461 MYO15BQ96JP2 1530 aa18.25■□□□□ 0.51
PHACTR3-209ENST00000541461 NACADO15069 1562 aa18.25■□□□□ 0.51
PHACTR3-209ENST00000541461 RB1CC1Q8TDY2 1594 aa18.18■□□□□ 0.5
PHACTR3-209ENST00000541461 SUPT5HO00267 1087 aaKnown RBP18.06■□□□□ 0.48
PHACTR3-209ENST00000541461 SCRIBQ14160 1630 aa17.97■□□□□ 0.47
PHACTR3-209ENST00000541461 UNC13AQ9UPW8 1703 aa17.79■□□□□ 0.44
PHACTR3-209ENST00000541461 PABPN1Q86U42 306 aaKnown RBP eCLIP17.7■□□□□ 0.42
PHACTR3-209ENST00000541461 BICRAQ9NZM4 1560 aa17.63■□□□□ 0.41
PHACTR3-209ENST00000541461 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
PHACTR3-209ENST00000541461 HRCP23327 699 aa17.52■□□□□ 0.39
PHACTR3-209ENST00000541461 PCGF6Q9BYE7 350 aa17.38■□□□□ 0.37
PHACTR3-209ENST00000541461 CECR2Q9BXF3 1484 aa17.37■□□□□ 0.37
PHACTR3-209ENST00000541461 MROH2BQ7Z745 1585 aa17.22■□□□□ 0.35
PHACTR3-209ENST00000541461 PPARGC1BQ86YN6 1023 aaKnown RBP17.2■□□□□ 0.34
PHACTR3-209ENST00000541461 LOC105371045A0A1W2PR82 267 aa17.19■□□□□ 0.34
PHACTR3-209ENST00000541461 RSF1Q96T23 1441 aaPredicted RBP17.17■□□□□ 0.34
PHACTR3-209ENST00000541461 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
PHACTR3-209ENST00000541461 EIF4G1Q04637 1599 aaKnown RBP17.14■□□□□ 0.34
PHACTR3-209ENST00000541461 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
PHACTR3-209ENST00000541461 WIZO95785 1651 aa17.08■□□□□ 0.32
PHACTR3-209ENST00000541461 CC2D2AQ9P2K1 1620 aa16.97■□□□□ 0.31
PHACTR3-209ENST00000541461 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
PHACTR3-209ENST00000541461 TRIM26Q12899 539 aaPredicted RBP16.93■□□□□ 0.3
PHACTR3-209ENST00000541461 PEG3Q9GZU2 1588 aa16.93■□□□□ 0.3
PHACTR3-209ENST00000541461 DNAJC5BQ9UF47 199 aa16.92■□□□□ 0.3
PHACTR3-209ENST00000541461 SMARCA2P51531 1590 aa16.92■□□□□ 0.3
PHACTR3-209ENST00000541461 NCAPD3P42695 1498 aa16.87■□□□□ 0.29
PHACTR3-209ENST00000541461 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
PHACTR3-209ENST00000541461 TOP2AP11388 1531 aaKnown RBP16.8■□□□□ 0.28
PHACTR3-209ENST00000541461 HMGXB3Q12766 1538 aa16.79■□□□□ 0.28
PHACTR3-209ENST00000541461 TRIM41Q8WV44 630 aa16.75■□□□□ 0.27
PHACTR3-209ENST00000541461 FAM9AQ8IZU1 332 aaPredicted RBP16.7■□□□□ 0.26
PHACTR3-209ENST00000541461 CCDC88BA6NC98 1476 aa16.69■□□□□ 0.26
PHACTR3-209ENST00000541461 ZEB1P37275 1124 aaPredicted RBP16.63■□□□□ 0.25
PHACTR3-209ENST00000541461 EHMT2Q96KQ7 1210 aa16.61■□□□□ 0.25
PHACTR3-209ENST00000541461 CADPSQ9ULU8 1353 aa16.43■□□□□ 0.22
PHACTR3-209ENST00000541461 CFTRP13569 1480 aa16.41■□□□□ 0.22
PHACTR3-209ENST00000541461 NESP48681 1621 aa16.41■□□□□ 0.22
PHACTR3-209ENST00000541461 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
PHACTR3-209ENST00000541461 LAMC3Q9Y6N6 1575 aa16.33■□□□□ 0.2
PHACTR3-209ENST00000541461 ABCC8Q09428 1581 aa16.32■□□□□ 0.2
PHACTR3-209ENST00000541461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.28■□□□□ 0.2
PHACTR3-209ENST00000541461 PDS5BQ9NTI5 1447 aa16.25■□□□□ 0.19
PHACTR3-209ENST00000541461 FANCD2Q9BXW9 1451 aa16.24■□□□□ 0.19
PHACTR3-209ENST00000541461 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
PHACTR3-209ENST00000541461 CCER1Q8TC90 406 aaPredicted RBP16.22■□□□□ 0.19
PHACTR3-209ENST00000541461 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
PHACTR3-209ENST00000541461 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
PHACTR3-209ENST00000541461 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
PHACTR3-209ENST00000541461 KIF21AQ7Z4S6 1674 aa16.16■□□□□ 0.18
PHACTR3-209ENST00000541461 ERCC6Q03468 1493 aa16.15■□□□□ 0.18
PHACTR3-209ENST00000541461 SYNJ1O43426 1573 aa16.14■□□□□ 0.17
PHACTR3-209ENST00000541461 TTBK1Q5TCY1 1321 aaPredicted RBP16.13■□□□□ 0.17
PHACTR3-209ENST00000541461 CUX1P39880 1505 aa16.1■□□□□ 0.17
PHACTR3-209ENST00000541461 ACIN1Q9UKV3 1341 aaKnown RBP16.06■□□□□ 0.16
PHACTR3-209ENST00000541461 NEUROD1Q13562 356 aa16.05■□□□□ 0.16
PHACTR3-209ENST00000541461 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
PHACTR3-209ENST00000541461 MRC2Q9UBG0 1479 aa16.04■□□□□ 0.16
PHACTR3-209ENST00000541461 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
PHACTR3-209ENST00000541461 DIEXFQ68CQ4 756 aaKnown RBP16.03■□□□□ 0.16
PHACTR3-209ENST00000541461 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
PHACTR3-209ENST00000541461 SOGA1O94964 1423 aa16.03■□□□□ 0.16
PHACTR3-209ENST00000541461 TOPBP1Q92547 1522 aa16.02■□□□□ 0.15
PHACTR3-209ENST00000541461 DNMBPQ6XZF7 1577 aa16■□□□□ 0.15
PHACTR3-209ENST00000541461 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
PHACTR3-209ENST00000541461 TNIKQ9UKE5 1360 aa15.97■□□□□ 0.15
PHACTR3-209ENST00000541461 THOC2Q8NI27 1593 aaKnown RBP15.97■□□□□ 0.15
PHACTR3-209ENST00000541461 FGD5Q6ZNL6 1462 aa15.96■□□□□ 0.15
PHACTR3-209ENST00000541461 WDR62O43379 1518 aa15.96■□□□□ 0.14
PHACTR3-209ENST00000541461 RUSC2Q8N2Y8 1516 aa15.95■□□□□ 0.14
PHACTR3-209ENST00000541461 SLC24A1O60721 1099 aa15.94■□□□□ 0.14
PHACTR3-209ENST00000541461 UBTFP17480 764 aaKnown RBP15.94■□□□□ 0.14
PHACTR3-209ENST00000541461 CSRNP3Q8WYN3 585 aa15.94■□□□□ 0.14
PHACTR3-209ENST00000541461 POLA1P09884 1462 aaPredicted RBP15.92■□□□□ 0.14
PHACTR3-209ENST00000541461 RAD54L2Q9Y4B4 1467 aa15.92■□□□□ 0.14
PHACTR3-209ENST00000541461 GTF3C3Q9Y5Q9 886 aa15.91■□□□□ 0.14
PHACTR3-209ENST00000541461 CENPBP07199 599 aaPredicted RBP15.9■□□□□ 0.14
PHACTR3-209ENST00000541461 EEA1Q15075 1411 aa15.87■□□□□ 0.13
PHACTR3-209ENST00000541461 CUX2O14529 1486 aa15.86■□□□□ 0.13
PHACTR3-209ENST00000541461 ZNF316A6NFI3 1004 aaPredicted RBP15.83■□□□□ 0.12
PHACTR3-209ENST00000541461 GOLGA3Q08378 1498 aa15.82■□□□□ 0.12
PHACTR3-209ENST00000541461 IFT140Q96RY7 1462 aa15.79■□□□□ 0.12
PHACTR3-209ENST00000541461 TDRD9Q8NDG6 1382 aaKnown RBP15.79■□□□□ 0.12
PHACTR3-209ENST00000541461 ABCA10Q8WWZ4 1543 aa15.79■□□□□ 0.12
PHACTR3-209ENST00000541461 TARBP1Q13395 1621 aaKnown RBP15.78■□□□□ 0.12
PHACTR3-209ENST00000541461 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
PHACTR3-209ENST00000541461 KIF27Q86VH2 1401 aa15.76■□□□□ 0.11
PHACTR3-209ENST00000541461 ZNF608Q9ULD9 1512 aaPredicted RBP15.74■□□□□ 0.11
PHACTR3-209ENST00000541461 WDR97A6NE52 1622 aa15.73■□□□□ 0.11
PHACTR3-209ENST00000541461 AQRO60306 1485 aaKnown RBP eCLIP15.73■□□□□ 0.11
PHACTR3-209ENST00000541461 YTHDC1Q96MU7 727 aaKnown RBP15.73■□□□□ 0.11
PHACTR3-209ENST00000541461 GAPVD1Q14C86 1478 aa15.69■□□□□ 0.1
PHACTR3-209ENST00000541461 MIER1Q8N108 512 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms