RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 NISCHQ9Y2I1 1504 aa20.8■□□□□ 0.92
TRAF1-202ENST00000540010 CCDC180Q9P1Z9 1646 aa17.82■□□□□ 0.44
TRAF1-202ENST00000540010 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
TRAF1-202ENST00000540010 SHROOM4Q9ULL8 1493 aa17.63■□□□□ 0.41
TRAF1-202ENST00000540010 ZCCHC6Q5VYS8 1495 aaKnown RBP17.47■□□□□ 0.39
TRAF1-202ENST00000540010 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
TRAF1-202ENST00000540010 ABCC9O60706 1549 aa17.06■□□□□ 0.32
TRAF1-202ENST00000540010 DCAF1Q9Y4B6 1507 aa17.01■□□□□ 0.31
TRAF1-202ENST00000540010 SCRIBQ14160 1630 aa16.73■□□□□ 0.27
TRAF1-202ENST00000540010 MYO15BQ96JP2 1530 aa16.68■□□□□ 0.26
TRAF1-202ENST00000540010 NACADO15069 1562 aa16.67■□□□□ 0.26
TRAF1-202ENST00000540010 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
TRAF1-202ENST00000540010 CHIC1Q5VXU3 224 aa16.33■□□□□ 0.2
TRAF1-202ENST00000540010 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
TRAF1-202ENST00000540010 PABPN1Q86U42 306 aaKnown RBP eCLIP16.29■□□□□ 0.2
TRAF1-202ENST00000540010 CECR2Q9BXF3 1484 aa16.24■□□□□ 0.19
TRAF1-202ENST00000540010 MROH2BQ7Z745 1585 aa16.13■□□□□ 0.17
TRAF1-202ENST00000540010 EHMT2Q96KQ7 1210 aa16.1■□□□□ 0.17
TRAF1-202ENST00000540010 BAZ1AQ9NRL2 1556 aaPredicted RBP16.06■□□□□ 0.16
TRAF1-202ENST00000540010 TRIM41Q8WV44 630 aa16.04■□□□□ 0.16
TRAF1-202ENST00000540010 UNC13AQ9UPW8 1703 aa16■□□□□ 0.15
TRAF1-202ENST00000540010 WIZO95785 1651 aa16■□□□□ 0.15
TRAF1-202ENST00000540010 PCGF6Q9BYE7 350 aa15.95■□□□□ 0.14
TRAF1-202ENST00000540010 FAM9AQ8IZU1 332 aaPredicted RBP15.92■□□□□ 0.14
TRAF1-202ENST00000540010 SMARCA4P51532 1647 aa15.9■□□□□ 0.14
TRAF1-202ENST00000540010 BICRAQ9NZM4 1560 aa15.9■□□□□ 0.14
TRAF1-202ENST00000540010 LOC105371045A0A1W2PR82 267 aa15.86■□□□□ 0.13
TRAF1-202ENST00000540010 TOP2AP11388 1531 aaKnown RBP15.79■□□□□ 0.12
TRAF1-202ENST00000540010 CCDC88BA6NC98 1476 aa15.73■□□□□ 0.11
TRAF1-202ENST00000540010 BAZ1BQ9UIG0 1483 aaKnown RBP15.68■□□□□ 0.1
TRAF1-202ENST00000540010 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
TRAF1-202ENST00000540010 SMARCA2P51531 1590 aa15.64■□□□□ 0.09
TRAF1-202ENST00000540010 TTBK1Q5TCY1 1321 aaPredicted RBP15.57■□□□□ 0.08
TRAF1-202ENST00000540010 PEG3Q9GZU2 1588 aa15.54■□□□□ 0.08
TRAF1-202ENST00000540010 ABCC8Q09428 1581 aa15.54■□□□□ 0.08
TRAF1-202ENST00000540010 EIF4G1Q04637 1599 aaKnown RBP15.52■□□□□ 0.07
TRAF1-202ENST00000540010 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
TRAF1-202ENST00000540010 NCAPD3P42695 1498 aa15.42■□□□□ 0.06
TRAF1-202ENST00000540010 UBTFP17480 764 aaKnown RBP15.41■□□□□ 0.06
TRAF1-202ENST00000540010 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
TRAF1-202ENST00000540010 HMGXB3Q12766 1538 aa15.35■□□□□ 0.05
TRAF1-202ENST00000540010 SOGA1O94964 1423 aa15.35■□□□□ 0.05
TRAF1-202ENST00000540010 HRCP23327 699 aa15.32■□□□□ 0.04
TRAF1-202ENST00000540010 TRIM26Q12899 539 aaPredicted RBP15.3■□□□□ 0.04
TRAF1-202ENST00000540010 EEA1Q15075 1411 aa15.28■□□□□ 0.04
TRAF1-202ENST00000540010 PPARGC1BQ86YN6 1023 aaKnown RBP15.28■□□□□ 0.04
TRAF1-202ENST00000540010 CCER1Q8TC90 406 aaPredicted RBP15.27■□□□□ 0.04
TRAF1-202ENST00000540010 CC2D2AQ9P2K1 1620 aa15.25■□□□□ 0.03
TRAF1-202ENST00000540010 RANGAP1P46060 587 aaPredicted RBP15.24■□□□□ 0.03
TRAF1-202ENST00000540010 APLP2Q06481 763 aa15.24■□□□□ 0.03
TRAF1-202ENST00000540010 RUSC2Q8N2Y8 1516 aa15.24■□□□□ 0.03
TRAF1-202ENST00000540010 ZEB1P37275 1124 aaPredicted RBP15.24■□□□□ 0.03
TRAF1-202ENST00000540010 SYNJ1O43426 1573 aa15.22■□□□□ 0.03
TRAF1-202ENST00000540010 PELP1Q8IZL8 1130 aaKnown RBP15.18■□□□□ 0.02
TRAF1-202ENST00000540010 CADPSQ9ULU8 1353 aa15.17■□□□□ 0.02
TRAF1-202ENST00000540010 CFTRP13569 1480 aa15.17■□□□□ 0.02
TRAF1-202ENST00000540010 CENPBP07199 599 aaPredicted RBP15.16■□□□□ 0.02
TRAF1-202ENST00000540010 GOLGA3Q08378 1498 aa15.15■□□□□ 0.02
TRAF1-202ENST00000540010 TNIKQ9UKE5 1360 aa15.13■□□□□ 0.01
TRAF1-202ENST00000540010 CEP162Q5TB80 1403 aa15.13■□□□□ 0.01
TRAF1-202ENST00000540010 CEP164Q9UPV0 1460 aa15.11■□□□□ 0.01
TRAF1-202ENST00000540010 YTHDC1Q96MU7 727 aaKnown RBP15.09■□□□□ 0.01
TRAF1-202ENST00000540010 TOP2BQ02880 1626 aa15.09■□□□□ 0.01
TRAF1-202ENST00000540010 KIF27Q86VH2 1401 aa15.05■□□□□ -0
TRAF1-202ENST00000540010 CUX1P39880 1505 aa15.05■□□□□ -0
TRAF1-202ENST00000540010 FANCD2Q9BXW9 1451 aa15.01□□□□□ -0.01
TRAF1-202ENST00000540010 CLIP1P30622 1438 aa15□□□□□ -0.01
TRAF1-202ENST00000540010 BIVM-ERCC5R4GMW8 1640 aa14.99□□□□□ -0.01
TRAF1-202ENST00000540010 RAPGEF2Q9Y4G8 1499 aa14.99□□□□□ -0.01
TRAF1-202ENST00000540010 NESP48681 1621 aa14.98□□□□□ -0.01
TRAF1-202ENST00000540010 CUX2O14529 1486 aa14.97□□□□□ -0.01
TRAF1-202ENST00000540010 DNAJC5BQ9UF47 199 aa14.96□□□□□ -0.01
TRAF1-202ENST00000540010 KIF21BO75037 1637 aa14.95□□□□□ -0.02
TRAF1-202ENST00000540010 FGD5Q6ZNL6 1462 aa14.93□□□□□ -0.02
TRAF1-202ENST00000540010 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
TRAF1-202ENST00000540010 PRDM2Q13029 1718 aa14.88□□□□□ -0.03
TRAF1-202ENST00000540010 PRXQ9BXM0 1461 aa14.85□□□□□ -0.03
TRAF1-202ENST00000540010 CARMIL1Q5VZK9 1371 aa14.85□□□□□ -0.03
TRAF1-202ENST00000540010 LAMC3Q9Y6N6 1575 aa14.83□□□□□ -0.03
TRAF1-202ENST00000540010 IGF1RP08069 1367 aa14.83□□□□□ -0.04
TRAF1-202ENST00000540010 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.04
TRAF1-202ENST00000540010 ATP1B4Q9UN42 357 aaPredicted RBP14.82□□□□□ -0.04
TRAF1-202ENST00000540010 ERICH3Q5RHP9 1530 aa14.82□□□□□ -0.04
TRAF1-202ENST00000540010 TOPBP1Q92547 1522 aa14.82□□□□□ -0.04
TRAF1-202ENST00000540010 VPS8Q8N3P4 1428 aa14.81□□□□□ -0.04
TRAF1-202ENST00000540010 DNMBPQ6XZF7 1577 aa14.81□□□□□ -0.04
TRAF1-202ENST00000540010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.81□□□□□ -0.04
TRAF1-202ENST00000540010 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
TRAF1-202ENST00000540010 P3H3Q8IVL6 736 aa14.77□□□□□ -0.04
TRAF1-202ENST00000540010 HNRNPUL2Q1KMD3 747 aaKnown RBP14.77□□□□□ -0.05
TRAF1-202ENST00000540010 TDRD9Q8NDG6 1382 aaKnown RBP14.76□□□□□ -0.05
TRAF1-202ENST00000540010 URB2Q14146 1524 aaKnown RBP14.73□□□□□ -0.05
TRAF1-202ENST00000540010 ABCA10Q8WWZ4 1543 aa14.7□□□□□ -0.06
TRAF1-202ENST00000540010 ERCC6Q03468 1493 aa14.67□□□□□ -0.06
TRAF1-202ENST00000540010 ERICH6Q7L0X2 663 aa14.66□□□□□ -0.06
TRAF1-202ENST00000540010 ARAP1Q96P48 1450 aa14.65□□□□□ -0.06
TRAF1-202ENST00000540010 DIEXFQ68CQ4 756 aaKnown RBP14.65□□□□□ -0.06
TRAF1-202ENST00000540010 GAPVD1Q14C86 1478 aa14.64□□□□□ -0.07
TRAF1-202ENST00000540010 ITGAEP38570 1179 aa14.64□□□□□ -0.07
TRAF1-202ENST00000540010 KIF21AQ7Z4S6 1674 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms