RNA–Protein interactions for RNA: ENST00000531741.1

VPS26B-206, Transcript of VPS26, retromer complex component B, humanhuman

TSL 2

Gene VPS26B, Length 2,073 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26B-206ENST00000531741 NISCHQ9Y2I1 1504 aa35.62■■■■□ 3.29
VPS26B-206ENST00000531741 CCDC180Q9P1Z9 1646 aa30.54■■■□□ 2.48
VPS26B-206ENST00000531741 ZCCHC6Q5VYS8 1495 aaKnown RBP30.14■■■□□ 2.42
VPS26B-206ENST00000531741 SHROOM4Q9ULL8 1493 aa29.81■■■□□ 2.36
VPS26B-206ENST00000531741 DCAF1Q9Y4B6 1507 aa29.45■■■□□ 2.3
VPS26B-206ENST00000531741 SUPT5HO00267 1087 aaKnown RBP29.19■■■□□ 2.26
VPS26B-206ENST00000531741 DCAF8L2P0C7V8 631 aa29.06■■■□□ 2.24
VPS26B-206ENST00000531741 MYO15BQ96JP2 1530 aa28.7■■■□□ 2.19
VPS26B-206ENST00000531741 CHIC1Q5VXU3 224 aa28.51■■■□□ 2.15
VPS26B-206ENST00000531741 ABCC9O60706 1549 aa28.41■■■□□ 2.14
VPS26B-206ENST00000531741 SCRIBQ14160 1630 aa28.27■■■□□ 2.12
VPS26B-206ENST00000531741 NACADO15069 1562 aa28.21■■■□□ 2.11
VPS26B-206ENST00000531741 RSF1Q96T23 1441 aaPredicted RBP28.06■■■□□ 2.08
VPS26B-206ENST00000531741 RB1CC1Q8TDY2 1594 aa27.83■■■□□ 2.04
VPS26B-206ENST00000531741 CECR2Q9BXF3 1484 aa27.62■■■□□ 2.01
VPS26B-206ENST00000531741 MROH2BQ7Z745 1585 aa27.58■■■□□ 2.01
VPS26B-206ENST00000531741 LOC105371045A0A1W2PR82 267 aa27.47■■□□□ 1.99
VPS26B-206ENST00000531741 WIZO95785 1651 aa27.41■■□□□ 1.98
VPS26B-206ENST00000531741 BAZ1AQ9NRL2 1556 aaPredicted RBP27.41■■□□□ 1.98
VPS26B-206ENST00000531741 HRCP23327 699 aa27.4■■□□□ 1.98
VPS26B-206ENST00000531741 TRIM41Q8WV44 630 aa27.36■■□□□ 1.97
VPS26B-206ENST00000531741 PCGF6Q9BYE7 350 aa27.31■■□□□ 1.96
VPS26B-206ENST00000531741 UNC13AQ9UPW8 1703 aa27.25■■□□□ 1.95
VPS26B-206ENST00000531741 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
VPS26B-206ENST00000531741 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
VPS26B-206ENST00000531741 TOP2AP11388 1531 aaKnown RBP27.12■■□□□ 1.93
VPS26B-206ENST00000531741 TRIM26Q12899 539 aaPredicted RBP27.04■■□□□ 1.92
VPS26B-206ENST00000531741 SMARCA2P51531 1590 aa26.92■■□□□ 1.9
VPS26B-206ENST00000531741 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
VPS26B-206ENST00000531741 FAM9AQ8IZU1 332 aaPredicted RBP26.89■■□□□ 1.89
VPS26B-206ENST00000531741 CCDC88BA6NC98 1476 aa26.89■■□□□ 1.89
VPS26B-206ENST00000531741 PEG3Q9GZU2 1588 aa26.79■■□□□ 1.88
VPS26B-206ENST00000531741 ABCC8Q09428 1581 aa26.67■■□□□ 1.86
VPS26B-206ENST00000531741 PABPN1Q86U42 306 aaKnown RBP eCLIP26.61■■□□□ 1.85
VPS26B-206ENST00000531741 PPARGC1BQ86YN6 1023 aaKnown RBP26.58■■□□□ 1.84
VPS26B-206ENST00000531741 EEA1Q15075 1411 aa26.52■■□□□ 1.84
VPS26B-206ENST00000531741 ZEB1P37275 1124 aaPredicted RBP26.5■■□□□ 1.83
VPS26B-206ENST00000531741 EHMT2Q96KQ7 1210 aa26.48■■□□□ 1.83
VPS26B-206ENST00000531741 ATAD2BQ9ULI0 1458 aa26.46■■□□□ 1.83
VPS26B-206ENST00000531741 SOGA1O94964 1423 aa26.39■■□□□ 1.82
VPS26B-206ENST00000531741 WRNQ14191 1432 aaPredicted RBP eCLIP26.37■■□□□ 1.81
VPS26B-206ENST00000531741 BAZ1BQ9UIG0 1483 aaKnown RBP26.36■■□□□ 1.81
VPS26B-206ENST00000531741 TNIKQ9UKE5 1360 aa26.34■■□□□ 1.81
VPS26B-206ENST00000531741 CSRNP3Q8WYN3 585 aa26.28■■□□□ 1.8
VPS26B-206ENST00000531741 CEP162Q5TB80 1403 aa26.28■■□□□ 1.8
VPS26B-206ENST00000531741 RUSC2Q8N2Y8 1516 aa26.23■■□□□ 1.79
VPS26B-206ENST00000531741 SYNJ1O43426 1573 aa26.22■■□□□ 1.79
VPS26B-206ENST00000531741 GOLGA3Q08378 1498 aa26.2■■□□□ 1.78
VPS26B-206ENST00000531741 KIF21BO75037 1637 aa26.14■■□□□ 1.77
VPS26B-206ENST00000531741 CEP164Q9UPV0 1460 aa26.1■■□□□ 1.77
VPS26B-206ENST00000531741 HMGXB3Q12766 1538 aa26.09■■□□□ 1.77
VPS26B-206ENST00000531741 NCAPD3P42695 1498 aa26.05■■□□□ 1.76
VPS26B-206ENST00000531741 TOP2BQ02880 1626 aa26.02■■□□□ 1.76
VPS26B-206ENST00000531741 UBTFP17480 764 aaKnown RBP26.02■■□□□ 1.76
VPS26B-206ENST00000531741 BIVM-ERCC5R4GMW8 1640 aa25.98■■□□□ 1.75
VPS26B-206ENST00000531741 CLIP1P30622 1438 aa25.82■■□□□ 1.72
VPS26B-206ENST00000531741 RAPGEF2Q9Y4G8 1499 aa25.8■■□□□ 1.72
VPS26B-206ENST00000531741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.78■■□□□ 1.72
VPS26B-206ENST00000531741 CCER1Q8TC90 406 aaPredicted RBP25.78■■□□□ 1.72
VPS26B-206ENST00000531741 CFTRP13569 1480 aa25.77■■□□□ 1.72
VPS26B-206ENST00000531741 ERICH3Q5RHP9 1530 aa25.76■■□□□ 1.71
VPS26B-206ENST00000531741 VPS8Q8N3P4 1428 aa25.76■■□□□ 1.71
VPS26B-206ENST00000531741 CUX1P39880 1505 aa25.72■■□□□ 1.71
VPS26B-206ENST00000531741 PRXQ9BXM0 1461 aa25.71■■□□□ 1.71
VPS26B-206ENST00000531741 PRDM2Q13029 1718 aa25.68■■□□□ 1.7
VPS26B-206ENST00000531741 TTBK1Q5TCY1 1321 aaPredicted RBP25.64■■□□□ 1.69
VPS26B-206ENST00000531741 KIF27Q86VH2 1401 aa25.59■■□□□ 1.69
VPS26B-206ENST00000531741 APLP2Q06481 763 aa25.49■■□□□ 1.67
VPS26B-206ENST00000531741 ARAP1Q96P48 1450 aa25.46■■□□□ 1.67
VPS26B-206ENST00000531741 CADPSQ9ULU8 1353 aa25.45■■□□□ 1.66
VPS26B-206ENST00000531741 CC2D2AQ9P2K1 1620 aa25.34■■□□□ 1.65
VPS26B-206ENST00000531741 CUX2O14529 1486 aa25.29■■□□□ 1.64
VPS26B-206ENST00000531741 RANGAP1P46060 587 aaPredicted RBP25.28■■□□□ 1.64
VPS26B-206ENST00000531741 HNRNPUL2Q1KMD3 747 aaKnown RBP25.28■■□□□ 1.64
VPS26B-206ENST00000531741 IGF1RP08069 1367 aa25.28■■□□□ 1.64
VPS26B-206ENST00000531741 ARHGAP35Q9NRY4 1499 aa25.26■■□□□ 1.63
VPS26B-206ENST00000531741 FGD5Q6ZNL6 1462 aa25.26■■□□□ 1.63
VPS26B-206ENST00000531741 DIEXFQ68CQ4 756 aaKnown RBP25.22■■□□□ 1.63
VPS26B-206ENST00000531741 RRBP1Q9P2E9 1410 aaKnown RBP25.19■■□□□ 1.62
VPS26B-206ENST00000531741 FANCD2Q9BXW9 1451 aa25.18■■□□□ 1.62
VPS26B-206ENST00000531741 CARMIL1Q5VZK9 1371 aa25.16■■□□□ 1.62
VPS26B-206ENST00000531741 ZNF316A6NFI3 1004 aaPredicted RBP25.15■■□□□ 1.62
VPS26B-206ENST00000531741 DNMBPQ6XZF7 1577 aa25.14■■□□□ 1.61
VPS26B-206ENST00000531741 KANK4Q5T7N3 995 aaPredicted RBP25.14■■□□□ 1.61
VPS26B-206ENST00000531741 MAP3K1Q13233 1512 aa25.14■■□□□ 1.61
VPS26B-206ENST00000531741 CLSPNQ9HAW4 1339 aa25.13■■□□□ 1.61
VPS26B-206ENST00000531741 ABCA10Q8WWZ4 1543 aa25.06■■□□□ 1.6
VPS26B-206ENST00000531741 TOPBP1Q92547 1522 aa25.03■■□□□ 1.6
VPS26B-206ENST00000531741 TIAM1Q13009 1591 aa25.02■■□□□ 1.6
VPS26B-206ENST00000531741 SCAF1Q9H7N4 1312 aaKnown RBP25.02■■□□□ 1.6
VPS26B-206ENST00000531741 DHX57Q6P158 1386 aaKnown RBP25■■□□□ 1.59
VPS26B-206ENST00000531741 CCNB3Q8WWL7 1395 aa25■■□□□ 1.59
VPS26B-206ENST00000531741 POLA1P09884 1462 aaPredicted RBP24.99■■□□□ 1.59
VPS26B-206ENST00000531741 LAMC3Q9Y6N6 1575 aa24.98■■□□□ 1.59
VPS26B-206ENST00000531741 FHAD1B1AJZ9 1412 aa24.97■■□□□ 1.59
VPS26B-206ENST00000531741 CUL7Q14999 1698 aa24.96■■□□□ 1.59
VPS26B-206ENST00000531741 ACIN1Q9UKV3 1341 aaKnown RBP24.95■■□□□ 1.58
VPS26B-206ENST00000531741 RAD54L2Q9Y4B4 1467 aa24.93■■□□□ 1.58
VPS26B-206ENST00000531741 NESP48681 1621 aa24.92■■□□□ 1.58
VPS26B-206ENST00000531741 EFCAB5A4FU69 1503 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms