RNA–Protein interactions for RNA: ENST00000530893.6

BRCA2-204, Transcript of BRCA2, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA2, Length 2,011 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA2-204ENST00000530893 NISCHQ9Y2I1 1504 aa36.64■■■■□ 3.46
BRCA2-204ENST00000530893 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
BRCA2-204ENST00000530893 ZCCHC6Q5VYS8 1495 aaKnown RBP30.97■■■□□ 2.55
BRCA2-204ENST00000530893 SHROOM4Q9ULL8 1493 aa30.55■■■□□ 2.48
BRCA2-204ENST00000530893 DCAF1Q9Y4B6 1507 aa30.3■■■□□ 2.44
BRCA2-204ENST00000530893 DCAF8L2P0C7V8 631 aa29.98■■■□□ 2.39
BRCA2-204ENST00000530893 SUPT5HO00267 1087 aaKnown RBP29.88■■■□□ 2.37
BRCA2-204ENST00000530893 MYO15BQ96JP2 1530 aa29.59■■■□□ 2.33
BRCA2-204ENST00000530893 ABCC9O60706 1549 aa29.17■■■□□ 2.26
BRCA2-204ENST00000530893 NACADO15069 1562 aa29.12■■■□□ 2.25
BRCA2-204ENST00000530893 SCRIBQ14160 1630 aa29.11■■■□□ 2.25
BRCA2-204ENST00000530893 CHIC1Q5VXU3 224 aa29.1■■■□□ 2.25
BRCA2-204ENST00000530893 RSF1Q96T23 1441 aaPredicted RBP28.79■■■□□ 2.2
BRCA2-204ENST00000530893 RB1CC1Q8TDY2 1594 aa28.65■■■□□ 2.18
BRCA2-204ENST00000530893 CECR2Q9BXF3 1484 aa28.39■■■□□ 2.14
BRCA2-204ENST00000530893 MROH2BQ7Z745 1585 aa28.34■■■□□ 2.13
BRCA2-204ENST00000530893 BAZ1AQ9NRL2 1556 aaPredicted RBP28.22■■■□□ 2.11
BRCA2-204ENST00000530893 WIZO95785 1651 aa28.17■■■□□ 2.1
BRCA2-204ENST00000530893 UNC13AQ9UPW8 1703 aa28.12■■■□□ 2.09
BRCA2-204ENST00000530893 TRIM41Q8WV44 630 aa28.04■■■□□ 2.08
BRCA2-204ENST00000530893 LOC105371045A0A1W2PR82 267 aa28.02■■■□□ 2.08
BRCA2-204ENST00000530893 SMARCA4P51532 1647 aa27.96■■■□□ 2.07
BRCA2-204ENST00000530893 TOP2AP11388 1531 aaKnown RBP27.89■■■□□ 2.06
BRCA2-204ENST00000530893 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
BRCA2-204ENST00000530893 PCGF6Q9BYE7 350 aa27.77■■■□□ 2.04
BRCA2-204ENST00000530893 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.04
BRCA2-204ENST00000530893 HRCP23327 699 aa27.75■■■□□ 2.03
BRCA2-204ENST00000530893 SMARCA2P51531 1590 aa27.66■■■□□ 2.02
BRCA2-204ENST00000530893 CCDC88BA6NC98 1476 aa27.63■■■□□ 2.01
BRCA2-204ENST00000530893 PEG3Q9GZU2 1588 aa27.6■■■□□ 2.01
BRCA2-204ENST00000530893 TRIM26Q12899 539 aaPredicted RBP27.55■■■□□ 2
BRCA2-204ENST00000530893 FAM9AQ8IZU1 332 aaPredicted RBP27.53■■■□□ 2
BRCA2-204ENST00000530893 PABPN1Q86U42 306 aaKnown RBP eCLIP27.5■■□□□ 1.99
BRCA2-204ENST00000530893 ABCC8Q09428 1581 aa27.36■■□□□ 1.97
BRCA2-204ENST00000530893 ATAD2BQ9ULI0 1458 aa27.27■■□□□ 1.96
BRCA2-204ENST00000530893 EEA1Q15075 1411 aa27.2■■□□□ 1.95
BRCA2-204ENST00000530893 BAZ1BQ9UIG0 1483 aaKnown RBP27.18■■□□□ 1.94
BRCA2-204ENST00000530893 EHMT2Q96KQ7 1210 aa27.11■■□□□ 1.93
BRCA2-204ENST00000530893 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.93
BRCA2-204ENST00000530893 SOGA1O94964 1423 aa27.05■■□□□ 1.92
BRCA2-204ENST00000530893 TNIKQ9UKE5 1360 aa26.97■■□□□ 1.91
BRCA2-204ENST00000530893 ZEB1P37275 1124 aaPredicted RBP26.96■■□□□ 1.91
BRCA2-204ENST00000530893 CSRNP3Q8WYN3 585 aa26.95■■□□□ 1.91
BRCA2-204ENST00000530893 HMGXB3Q12766 1538 aa26.92■■□□□ 1.9
BRCA2-204ENST00000530893 SYNJ1O43426 1573 aa26.92■■□□□ 1.9
BRCA2-204ENST00000530893 PPARGC1BQ86YN6 1023 aaKnown RBP26.91■■□□□ 1.9
BRCA2-204ENST00000530893 CEP162Q5TB80 1403 aa26.88■■□□□ 1.89
BRCA2-204ENST00000530893 NCAPD3P42695 1498 aa26.88■■□□□ 1.89
BRCA2-204ENST00000530893 RUSC2Q8N2Y8 1516 aa26.87■■□□□ 1.89
BRCA2-204ENST00000530893 GOLGA3Q08378 1498 aa26.86■■□□□ 1.89
BRCA2-204ENST00000530893 KIF21BO75037 1637 aa26.79■■□□□ 1.88
BRCA2-204ENST00000530893 CEP164Q9UPV0 1460 aa26.77■■□□□ 1.88
BRCA2-204ENST00000530893 TOP2BQ02880 1626 aa26.75■■□□□ 1.87
BRCA2-204ENST00000530893 UBTFP17480 764 aaKnown RBP26.7■■□□□ 1.87
BRCA2-204ENST00000530893 BIVM-ERCC5R4GMW8 1640 aa26.7■■□□□ 1.86
BRCA2-204ENST00000530893 CFTRP13569 1480 aa26.55■■□□□ 1.84
BRCA2-204ENST00000530893 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
BRCA2-204ENST00000530893 CLIP1P30622 1438 aa26.46■■□□□ 1.83
BRCA2-204ENST00000530893 RAPGEF2Q9Y4G8 1499 aa26.45■■□□□ 1.82
BRCA2-204ENST00000530893 ERICH3Q5RHP9 1530 aa26.44■■□□□ 1.82
BRCA2-204ENST00000530893 CUX1P39880 1505 aa26.43■■□□□ 1.82
BRCA2-204ENST00000530893 VPS8Q8N3P4 1428 aa26.38■■□□□ 1.81
BRCA2-204ENST00000530893 PRXQ9BXM0 1461 aa26.37■■□□□ 1.81
BRCA2-204ENST00000530893 KIF27Q86VH2 1401 aa26.31■■□□□ 1.8
BRCA2-204ENST00000530893 CCER1Q8TC90 406 aaPredicted RBP26.29■■□□□ 1.8
BRCA2-204ENST00000530893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.27■■□□□ 1.8
BRCA2-204ENST00000530893 CADPSQ9ULU8 1353 aa26.26■■□□□ 1.79
BRCA2-204ENST00000530893 CC2D2AQ9P2K1 1620 aa26.23■■□□□ 1.79
BRCA2-204ENST00000530893 TTBK1Q5TCY1 1321 aaPredicted RBP26.21■■□□□ 1.79
BRCA2-204ENST00000530893 APLP2Q06481 763 aa26.16■■□□□ 1.78
BRCA2-204ENST00000530893 ARAP1Q96P48 1450 aa26.06■■□□□ 1.76
BRCA2-204ENST00000530893 CUX2O14529 1486 aa26.02■■□□□ 1.76
BRCA2-204ENST00000530893 FGD5Q6ZNL6 1462 aa26■■□□□ 1.75
BRCA2-204ENST00000530893 FANCD2Q9BXW9 1451 aa25.98■■□□□ 1.75
BRCA2-204ENST00000530893 IGF1RP08069 1367 aa25.98■■□□□ 1.75
BRCA2-204ENST00000530893 RANGAP1P46060 587 aaPredicted RBP25.96■■□□□ 1.75
BRCA2-204ENST00000530893 DNMBPQ6XZF7 1577 aa25.91■■□□□ 1.74
BRCA2-204ENST00000530893 ARHGAP35Q9NRY4 1499 aa25.9■■□□□ 1.74
BRCA2-204ENST00000530893 CARMIL1Q5VZK9 1371 aa25.86■■□□□ 1.73
BRCA2-204ENST00000530893 HNRNPUL2Q1KMD3 747 aaKnown RBP25.83■■□□□ 1.73
BRCA2-204ENST00000530893 LAMC3Q9Y6N6 1575 aa25.82■■□□□ 1.72
BRCA2-204ENST00000530893 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
BRCA2-204ENST00000530893 TOPBP1Q92547 1522 aa25.79■■□□□ 1.72
BRCA2-204ENST00000530893 MAP3K1Q13233 1512 aa25.76■■□□□ 1.71
BRCA2-204ENST00000530893 RRBP1Q9P2E9 1410 aaKnown RBP25.75■■□□□ 1.71
BRCA2-204ENST00000530893 POLA1P09884 1462 aaPredicted RBP25.75■■□□□ 1.71
BRCA2-204ENST00000530893 KANK4Q5T7N3 995 aaPredicted RBP25.73■■□□□ 1.71
BRCA2-204ENST00000530893 NESP48681 1621 aa25.71■■□□□ 1.71
BRCA2-204ENST00000530893 CUL7Q14999 1698 aa25.7■■□□□ 1.7
BRCA2-204ENST00000530893 DNAJC5BQ9UF47 199 aa25.68■■□□□ 1.7
BRCA2-204ENST00000530893 CLSPNQ9HAW4 1339 aa25.67■■□□□ 1.7
BRCA2-204ENST00000530893 RAD54L2Q9Y4B4 1467 aa25.66■■□□□ 1.7
BRCA2-204ENST00000530893 FHAD1B1AJZ9 1412 aa25.64■■□□□ 1.7
BRCA2-204ENST00000530893 TIAM1Q13009 1591 aa25.64■■□□□ 1.7
BRCA2-204ENST00000530893 DIEXFQ68CQ4 756 aaKnown RBP25.64■■□□□ 1.69
BRCA2-204ENST00000530893 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
BRCA2-204ENST00000530893 ZNF316A6NFI3 1004 aaPredicted RBP25.59■■□□□ 1.69
BRCA2-204ENST00000530893 EFCAB5A4FU69 1503 aa25.59■■□□□ 1.69
BRCA2-204ENST00000530893 PDS5BQ9NTI5 1447 aa25.59■■□□□ 1.69
BRCA2-204ENST00000530893 CCNB3Q8WWL7 1395 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms