RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 NISCHQ9Y2I1 1504 aa24.57■■□□□ 1.52
USP35-207ENST00000530546 CCDC180Q9P1Z9 1646 aa20.99■□□□□ 0.95
USP35-207ENST00000530546 SHROOM4Q9ULL8 1493 aa20.82■□□□□ 0.92
USP35-207ENST00000530546 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
USP35-207ENST00000530546 DCAF8L2P0C7V8 631 aa20.66■□□□□ 0.9
USP35-207ENST00000530546 SUPT5HO00267 1087 aaKnown RBP20.26■□□□□ 0.83
USP35-207ENST00000530546 DCAF1Q9Y4B6 1507 aa20.11■□□□□ 0.81
USP35-207ENST00000530546 ABCC9O60706 1549 aa19.88■□□□□ 0.77
USP35-207ENST00000530546 SCRIBQ14160 1630 aa19.71■□□□□ 0.75
USP35-207ENST00000530546 MYO15BQ96JP2 1530 aa19.64■□□□□ 0.74
USP35-207ENST00000530546 NACADO15069 1562 aa19.53■□□□□ 0.72
USP35-207ENST00000530546 CHIC1Q5VXU3 224 aa19.46■□□□□ 0.71
USP35-207ENST00000530546 RSF1Q96T23 1441 aaPredicted RBP19.33■□□□□ 0.68
USP35-207ENST00000530546 RB1CC1Q8TDY2 1594 aa19.31■□□□□ 0.68
USP35-207ENST00000530546 CECR2Q9BXF3 1484 aa19.22■□□□□ 0.67
USP35-207ENST00000530546 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
USP35-207ENST00000530546 PABPN1Q86U42 306 aaKnown RBP eCLIP18.99■□□□□ 0.63
USP35-207ENST00000530546 WIZO95785 1651 aa18.96■□□□□ 0.63
USP35-207ENST00000530546 UNC13AQ9UPW8 1703 aa18.94■□□□□ 0.62
USP35-207ENST00000530546 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
USP35-207ENST00000530546 HRCP23327 699 aa18.9■□□□□ 0.62
USP35-207ENST00000530546 BAZ1AQ9NRL2 1556 aaPredicted RBP18.89■□□□□ 0.62
USP35-207ENST00000530546 TRIM41Q8WV44 630 aa18.87■□□□□ 0.61
USP35-207ENST00000530546 SMARCA4P51532 1647 aa18.77■□□□□ 0.6
USP35-207ENST00000530546 FAM9AQ8IZU1 332 aaPredicted RBP18.76■□□□□ 0.59
USP35-207ENST00000530546 BICRAQ9NZM4 1560 aa18.76■□□□□ 0.59
USP35-207ENST00000530546 PELP1Q8IZL8 1130 aaKnown RBP18.71■□□□□ 0.59
USP35-207ENST00000530546 TOP2AP11388 1531 aaKnown RBP18.65■□□□□ 0.58
USP35-207ENST00000530546 EHMT2Q96KQ7 1210 aa18.65■□□□□ 0.58
USP35-207ENST00000530546 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
USP35-207ENST00000530546 PCGF6Q9BYE7 350 aa18.54■□□□□ 0.56
USP35-207ENST00000530546 SMARCA2P51531 1590 aa18.54■□□□□ 0.56
USP35-207ENST00000530546 EIF4G1Q04637 1599 aaKnown RBP18.48■□□□□ 0.55
USP35-207ENST00000530546 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
USP35-207ENST00000530546 ATAD2BQ9ULI0 1458 aa18.4■□□□□ 0.54
USP35-207ENST00000530546 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
USP35-207ENST00000530546 BAZ1BQ9UIG0 1483 aaKnown RBP18.36■□□□□ 0.53
USP35-207ENST00000530546 PPARGC1BQ86YN6 1023 aaKnown RBP18.26■□□□□ 0.51
USP35-207ENST00000530546 TRIM26Q12899 539 aaPredicted RBP18.23■□□□□ 0.51
USP35-207ENST00000530546 SOGA1O94964 1423 aa18.22■□□□□ 0.51
USP35-207ENST00000530546 WRNQ14191 1432 aaPredicted RBP eCLIP18.19■□□□□ 0.5
USP35-207ENST00000530546 RUSC2Q8N2Y8 1516 aa18.14■□□□□ 0.49
USP35-207ENST00000530546 MYT1Q01538 1121 aa18.12■□□□□ 0.49
USP35-207ENST00000530546 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
USP35-207ENST00000530546 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
USP35-207ENST00000530546 SYNJ1O43426 1573 aa18.07■□□□□ 0.48
USP35-207ENST00000530546 UBTFP17480 764 aaKnown RBP18.06■□□□□ 0.48
USP35-207ENST00000530546 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
USP35-207ENST00000530546 EEA1Q15075 1411 aa18.02■□□□□ 0.48
USP35-207ENST00000530546 CEP162Q5TB80 1403 aa17.96■□□□□ 0.47
USP35-207ENST00000530546 TTBK1Q5TCY1 1321 aaPredicted RBP17.95■□□□□ 0.46
USP35-207ENST00000530546 TNIKQ9UKE5 1360 aa17.94■□□□□ 0.46
USP35-207ENST00000530546 GOLGA3Q08378 1498 aa17.91■□□□□ 0.46
USP35-207ENST00000530546 SCAF1Q9H7N4 1312 aaKnown RBP17.89■□□□□ 0.45
USP35-207ENST00000530546 TOP2BQ02880 1626 aa17.86■□□□□ 0.45
USP35-207ENST00000530546 RANGAP1P46060 587 aaPredicted RBP17.85■□□□□ 0.45
USP35-207ENST00000530546 CFTRP13569 1480 aa17.85■□□□□ 0.45
USP35-207ENST00000530546 ZEB1P37275 1124 aaPredicted RBP17.85■□□□□ 0.45
USP35-207ENST00000530546 CEP164Q9UPV0 1460 aa17.84■□□□□ 0.45
USP35-207ENST00000530546 CC2D2AQ9P2K1 1620 aa17.84■□□□□ 0.45
USP35-207ENST00000530546 CUX1P39880 1505 aa17.8■□□□□ 0.44
USP35-207ENST00000530546 RAPGEF2Q9Y4G8 1499 aa17.78■□□□□ 0.44
USP35-207ENST00000530546 BIVM-ERCC5R4GMW8 1640 aa17.78■□□□□ 0.44
USP35-207ENST00000530546 KIF21BO75037 1637 aa17.76■□□□□ 0.43
USP35-207ENST00000530546 CADPSQ9ULU8 1353 aa17.76■□□□□ 0.43
USP35-207ENST00000530546 CLIP1P30622 1438 aa17.72■□□□□ 0.43
USP35-207ENST00000530546 KIF27Q86VH2 1401 aa17.66■□□□□ 0.42
USP35-207ENST00000530546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
USP35-207ENST00000530546 PRXQ9BXM0 1461 aa17.61■□□□□ 0.41
USP35-207ENST00000530546 PRDM2Q13029 1718 aa17.59■□□□□ 0.41
USP35-207ENST00000530546 NESP48681 1621 aa17.59■□□□□ 0.41
USP35-207ENST00000530546 CUX2O14529 1486 aa17.59■□□□□ 0.41
USP35-207ENST00000530546 FANCD2Q9BXW9 1451 aa17.58■□□□□ 0.41
USP35-207ENST00000530546 APLP2Q06481 763 aa17.58■□□□□ 0.4
USP35-207ENST00000530546 DNAJC5BQ9UF47 199 aa17.57■□□□□ 0.4
USP35-207ENST00000530546 CCER1Q8TC90 406 aaPredicted RBP17.56■□□□□ 0.4
USP35-207ENST00000530546 VPS8Q8N3P4 1428 aa17.56■□□□□ 0.4
USP35-207ENST00000530546 FGD5Q6ZNL6 1462 aa17.56■□□□□ 0.4
USP35-207ENST00000530546 ERICH3Q5RHP9 1530 aa17.54■□□□□ 0.4
USP35-207ENST00000530546 IGF1RP08069 1367 aa17.5■□□□□ 0.39
USP35-207ENST00000530546 ACIN1Q9UKV3 1341 aaKnown RBP17.48■□□□□ 0.39
USP35-207ENST00000530546 HNRNPUL2Q1KMD3 747 aaKnown RBP17.46■□□□□ 0.38
USP35-207ENST00000530546 RAD54L2Q9Y4B4 1467 aa17.45■□□□□ 0.38
USP35-207ENST00000530546 CARMIL1Q5VZK9 1371 aa17.44■□□□□ 0.38
USP35-207ENST00000530546 ARAP1Q96P48 1450 aa17.44■□□□□ 0.38
USP35-207ENST00000530546 TOPBP1Q92547 1522 aa17.42■□□□□ 0.38
USP35-207ENST00000530546 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
USP35-207ENST00000530546 POLA1P09884 1462 aaPredicted RBP17.39■□□□□ 0.37
USP35-207ENST00000530546 LAMC3Q9Y6N6 1575 aa17.36■□□□□ 0.37
USP35-207ENST00000530546 KANK4Q5T7N3 995 aaPredicted RBP17.35■□□□□ 0.37
USP35-207ENST00000530546 ARHGAP35Q9NRY4 1499 aa17.35■□□□□ 0.37
USP35-207ENST00000530546 URB2Q14146 1524 aaKnown RBP17.33■□□□□ 0.37
USP35-207ENST00000530546 NEUROD1Q13562 356 aa17.32■□□□□ 0.36
USP35-207ENST00000530546 P3H3Q8IVL6 736 aa17.32■□□□□ 0.36
USP35-207ENST00000530546 PDS5BQ9NTI5 1447 aa17.32■□□□□ 0.36
USP35-207ENST00000530546 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
USP35-207ENST00000530546 CENPBP07199 599 aaPredicted RBP17.29■□□□□ 0.36
USP35-207ENST00000530546 TDRD9Q8NDG6 1382 aaKnown RBP17.29■□□□□ 0.36
USP35-207ENST00000530546 GTF3C3Q9Y5Q9 886 aa17.26■□□□□ 0.35
USP35-207ENST00000530546 ATP1B4Q9UN42 357 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms