RNA–Protein interactions for RNA: ENST00000519207.5

SH2D4A-204, Transcript of SH2 domain containing 4A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SH2D4A, Length 1,984 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH2D4A-204ENST00000519207 NISCHQ9Y2I1 1504 aa21.12■□□□□ 0.97
SH2D4A-204ENST00000519207 ABCC9O60706 1549 aa18.96■□□□□ 0.63
SH2D4A-204ENST00000519207 CCDC180Q9P1Z9 1646 aa18.88■□□□□ 0.61
SH2D4A-204ENST00000519207 RB1CC1Q8TDY2 1594 aa18■□□□□ 0.47
SH2D4A-204ENST00000519207 DCAF8L2P0C7V8 631 aa17.91■□□□□ 0.46
SH2D4A-204ENST00000519207 NACADO15069 1562 aa17.88■□□□□ 0.45
SH2D4A-204ENST00000519207 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
SH2D4A-204ENST00000519207 DNAJC5BQ9UF47 199 aa17.85■□□□□ 0.45
SH2D4A-204ENST00000519207 ZCCHC6Q5VYS8 1495 aaKnown RBP17.85■□□□□ 0.45
SH2D4A-204ENST00000519207 AEBP2Q6ZN18 517 aaPredicted RBP17.77■□□□□ 0.43
SH2D4A-204ENST00000519207 PABPN1Q86U42 306 aaKnown RBP eCLIP17.7■□□□□ 0.42
SH2D4A-204ENST00000519207 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
SH2D4A-204ENST00000519207 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
SH2D4A-204ENST00000519207 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.41
SH2D4A-204ENST00000519207 BICRAQ9NZM4 1560 aa17.5■□□□□ 0.39
SH2D4A-204ENST00000519207 DCAF1Q9Y4B6 1507 aa17.44■□□□□ 0.38
SH2D4A-204ENST00000519207 SUPT5HO00267 1087 aaKnown RBP17.32■□□□□ 0.36
SH2D4A-204ENST00000519207 SCRIBQ14160 1630 aa17.25■□□□□ 0.35
SH2D4A-204ENST00000519207 CC2D2AQ9P2K1 1620 aa17.1■□□□□ 0.33
SH2D4A-204ENST00000519207 CECR2Q9BXF3 1484 aa17.07■□□□□ 0.32
SH2D4A-204ENST00000519207 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
SH2D4A-204ENST00000519207 HRCP23327 699 aa16.77■□□□□ 0.27
SH2D4A-204ENST00000519207 PELP1Q8IZL8 1130 aaKnown RBP16.63■□□□□ 0.25
SH2D4A-204ENST00000519207 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
SH2D4A-204ENST00000519207 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
SH2D4A-204ENST00000519207 ATAD2BQ9ULI0 1458 aa16.5■□□□□ 0.23
SH2D4A-204ENST00000519207 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
SH2D4A-204ENST00000519207 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
SH2D4A-204ENST00000519207 HMGXB3Q12766 1538 aa16.38■□□□□ 0.21
SH2D4A-204ENST00000519207 BAZ1AQ9NRL2 1556 aaPredicted RBP16.37■□□□□ 0.21
SH2D4A-204ENST00000519207 DNAJC5Q9H3Z4 198 aa16.35■□□□□ 0.21
SH2D4A-204ENST00000519207 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
SH2D4A-204ENST00000519207 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
SH2D4A-204ENST00000519207 BAZ1BQ9UIG0 1483 aaKnown RBP16.32■□□□□ 0.2
SH2D4A-204ENST00000519207 NESP48681 1621 aa16.3■□□□□ 0.2
SH2D4A-204ENST00000519207 CUX2O14529 1486 aa16.29■□□□□ 0.2
SH2D4A-204ENST00000519207 PEG3Q9GZU2 1588 aa16.29■□□□□ 0.2
SH2D4A-204ENST00000519207 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
SH2D4A-204ENST00000519207 WIZO95785 1651 aa16.24■□□□□ 0.19
SH2D4A-204ENST00000519207 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
SH2D4A-204ENST00000519207 PCGF6Q9BYE7 350 aa16.19■□□□□ 0.18
SH2D4A-204ENST00000519207 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
SH2D4A-204ENST00000519207 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
SH2D4A-204ENST00000519207 MYT1Q01538 1121 aa16.1■□□□□ 0.17
SH2D4A-204ENST00000519207 THOC2Q8NI27 1593 aaKnown RBP16.07■□□□□ 0.16
SH2D4A-204ENST00000519207 PDS5BQ9NTI5 1447 aa16.07■□□□□ 0.16
SH2D4A-204ENST00000519207 TOP2AP11388 1531 aaKnown RBP16.07■□□□□ 0.16
SH2D4A-204ENST00000519207 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
SH2D4A-204ENST00000519207 TRIM26Q12899 539 aaPredicted RBP16.04■□□□□ 0.16
SH2D4A-204ENST00000519207 KIF21AQ7Z4S6 1674 aa16.03■□□□□ 0.16
SH2D4A-204ENST00000519207 FAM9AQ8IZU1 332 aaPredicted RBP15.96■□□□□ 0.15
SH2D4A-204ENST00000519207 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
SH2D4A-204ENST00000519207 SCAF1Q9H7N4 1312 aaKnown RBP15.92■□□□□ 0.14
SH2D4A-204ENST00000519207 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
SH2D4A-204ENST00000519207 WDR62O43379 1518 aa15.87■□□□□ 0.13
SH2D4A-204ENST00000519207 CFTRP13569 1480 aa15.86■□□□□ 0.13
SH2D4A-204ENST00000519207 FANCD2Q9BXW9 1451 aa15.85■□□□□ 0.13
SH2D4A-204ENST00000519207 CEP164Q9UPV0 1460 aa15.85■□□□□ 0.13
SH2D4A-204ENST00000519207 PHF23Q9BUL5 403 aaPredicted RBP15.82■□□□□ 0.12
SH2D4A-204ENST00000519207 ABCC8Q09428 1581 aa15.79■□□□□ 0.12
SH2D4A-204ENST00000519207 EEA1Q15075 1411 aa15.72■□□□□ 0.11
SH2D4A-204ENST00000519207 URB2Q14146 1524 aaKnown RBP15.72■□□□□ 0.11
SH2D4A-204ENST00000519207 ZEB1P37275 1124 aaPredicted RBP15.72■□□□□ 0.11
SH2D4A-204ENST00000519207 EHMT2Q96KQ7 1210 aa15.71■□□□□ 0.11
SH2D4A-204ENST00000519207 SOGA1O94964 1423 aa15.64■□□□□ 0.09
SH2D4A-204ENST00000519207 WRNQ14191 1432 aaPredicted RBP eCLIP15.62■□□□□ 0.09
SH2D4A-204ENST00000519207 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
SH2D4A-204ENST00000519207 TNIKQ9UKE5 1360 aa15.62■□□□□ 0.09
SH2D4A-204ENST00000519207 PRDM2Q13029 1718 aa15.61■□□□□ 0.09
SH2D4A-204ENST00000519207 CSRNP3Q8WYN3 585 aa15.59■□□□□ 0.09
SH2D4A-204ENST00000519207 CEP162Q5TB80 1403 aa15.57■□□□□ 0.08
SH2D4A-204ENST00000519207 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
SH2D4A-204ENST00000519207 ZNF608Q9ULD9 1512 aaPredicted RBP15.55■□□□□ 0.08
SH2D4A-204ENST00000519207 IFT140Q96RY7 1462 aa15.54■□□□□ 0.08
SH2D4A-204ENST00000519207 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
SH2D4A-204ENST00000519207 GOLGA3Q08378 1498 aa15.53■□□□□ 0.08
SH2D4A-204ENST00000519207 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
SH2D4A-204ENST00000519207 ACIN1Q9UKV3 1341 aaKnown RBP15.49■□□□□ 0.07
SH2D4A-204ENST00000519207 KIF21BO75037 1637 aa15.47■□□□□ 0.07
SH2D4A-204ENST00000519207 DNMBPQ6XZF7 1577 aa15.47■□□□□ 0.07
SH2D4A-204ENST00000519207 UBTFP17480 764 aaKnown RBP15.45■□□□□ 0.06
SH2D4A-204ENST00000519207 AQRO60306 1485 aaKnown RBP eCLIP15.42■□□□□ 0.06
SH2D4A-204ENST00000519207 TOP2BQ02880 1626 aa15.42■□□□□ 0.06
SH2D4A-204ENST00000519207 EIF4G3O43432 1585 aaKnown RBP15.41■□□□□ 0.06
SH2D4A-204ENST00000519207 POLA1P09884 1462 aaPredicted RBP15.4■□□□□ 0.06
SH2D4A-204ENST00000519207 TARBP1Q13395 1621 aaKnown RBP15.4■□□□□ 0.06
SH2D4A-204ENST00000519207 BIVM-ERCC5R4GMW8 1640 aa15.38■□□□□ 0.05
SH2D4A-204ENST00000519207 RAD54L2Q9Y4B4 1467 aa15.37■□□□□ 0.05
SH2D4A-204ENST00000519207 NEUROD1Q13562 356 aa15.36■□□□□ 0.05
SH2D4A-204ENST00000519207 RIMBP3CA6NJZ7 1639 aa15.35■□□□□ 0.05
SH2D4A-204ENST00000519207 RIMBP3BA6NNM3 1639 aa15.35■□□□□ 0.05
SH2D4A-204ENST00000519207 RIMBP3Q9UFD9 1639 aa15.35■□□□□ 0.05
SH2D4A-204ENST00000519207 FBLN2P98095 1184 aa15.34■□□□□ 0.05
SH2D4A-204ENST00000519207 TDRD9Q8NDG6 1382 aaKnown RBP15.34■□□□□ 0.05
SH2D4A-204ENST00000519207 ARHGEF11O15085 1522 aa15.32■□□□□ 0.04
SH2D4A-204ENST00000519207 CLIP1P30622 1438 aa15.31■□□□□ 0.04
SH2D4A-204ENST00000519207 FGD5Q6ZNL6 1462 aa15.3■□□□□ 0.04
SH2D4A-204ENST00000519207 CCER1Q8TC90 406 aaPredicted RBP15.29■□□□□ 0.04
SH2D4A-204ENST00000519207 CUX1P39880 1505 aa15.29■□□□□ 0.04
SH2D4A-204ENST00000519207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms