RNA–Protein interactions for RNA: ENST00000513448.5

PROM1-215, Transcript of prominin 1, humanhuman

TSL 1 (best)

Gene PROM1, Length 2,042 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-215ENST00000513448 NISCHQ9Y2I1 1504 aa19.84■□□□□ 0.77
PROM1-215ENST00000513448 CCDC180Q9P1Z9 1646 aa17.06■□□□□ 0.32
PROM1-215ENST00000513448 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
PROM1-215ENST00000513448 SHROOM4Q9ULL8 1493 aa16.46■□□□□ 0.23
PROM1-215ENST00000513448 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.22
PROM1-215ENST00000513448 DCAF8L2P0C7V8 631 aa16.2■□□□□ 0.18
PROM1-215ENST00000513448 SUPT5HO00267 1087 aaKnown RBP16.12■□□□□ 0.17
PROM1-215ENST00000513448 MYO15BQ96JP2 1530 aa16.09■□□□□ 0.17
PROM1-215ENST00000513448 AEBP2Q6ZN18 517 aaPredicted RBP15.98■□□□□ 0.15
PROM1-215ENST00000513448 NACADO15069 1562 aa15.8■□□□□ 0.12
PROM1-215ENST00000513448 ABCC9O60706 1549 aa15.76■□□□□ 0.11
PROM1-215ENST00000513448 CHIC1Q5VXU3 224 aa15.73■□□□□ 0.11
PROM1-215ENST00000513448 SCRIBQ14160 1630 aa15.7■□□□□ 0.1
PROM1-215ENST00000513448 RSF1Q96T23 1441 aaPredicted RBP15.58■□□□□ 0.09
PROM1-215ENST00000513448 RB1CC1Q8TDY2 1594 aa15.53■□□□□ 0.08
PROM1-215ENST00000513448 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
PROM1-215ENST00000513448 MROH2BQ7Z745 1585 aa15.32■□□□□ 0.04
PROM1-215ENST00000513448 BAZ1AQ9NRL2 1556 aaPredicted RBP15.29■□□□□ 0.04
PROM1-215ENST00000513448 WIZO95785 1651 aa15.2■□□□□ 0.02
PROM1-215ENST00000513448 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
PROM1-215ENST00000513448 UNC13AQ9UPW8 1703 aa15.17■□□□□ 0.02
PROM1-215ENST00000513448 SMARCA4P51532 1647 aa15.13■□□□□ 0.01
PROM1-215ENST00000513448 LOC105371045A0A1W2PR82 267 aa15.11■□□□□ 0.01
PROM1-215ENST00000513448 TOP2AP11388 1531 aaKnown RBP15.09■□□□□ 0.01
PROM1-215ENST00000513448 BICRAQ9NZM4 1560 aa15.02■□□□□ -0
PROM1-215ENST00000513448 EIF4G1Q04637 1599 aaKnown RBP15.02□□□□□ -0.01
PROM1-215ENST00000513448 HRCP23327 699 aa14.97□□□□□ -0.01
PROM1-215ENST00000513448 PCGF6Q9BYE7 350 aa14.97□□□□□ -0.01
PROM1-215ENST00000513448 PEG3Q9GZU2 1588 aa14.96□□□□□ -0.01
PROM1-215ENST00000513448 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
PROM1-215ENST00000513448 SMARCA2P51531 1590 aa14.95□□□□□ -0.02
PROM1-215ENST00000513448 TRIM26Q12899 539 aaPredicted RBP14.9□□□□□ -0.02
PROM1-215ENST00000513448 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
PROM1-215ENST00000513448 FAM9AQ8IZU1 332 aaPredicted RBP14.84□□□□□ -0.03
PROM1-215ENST00000513448 ATAD2BQ9ULI0 1458 aa14.78□□□□□ -0.04
PROM1-215ENST00000513448 EEA1Q15075 1411 aa14.77□□□□□ -0.05
PROM1-215ENST00000513448 ABCC8Q09428 1581 aa14.75□□□□□ -0.05
PROM1-215ENST00000513448 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
PROM1-215ENST00000513448 WRNQ14191 1432 aaPredicted RBP eCLIP14.66□□□□□ -0.06
PROM1-215ENST00000513448 ZEB1P37275 1124 aaPredicted RBP14.62□□□□□ -0.07
PROM1-215ENST00000513448 TNIKQ9UKE5 1360 aa14.61□□□□□ -0.07
PROM1-215ENST00000513448 CSRNP3Q8WYN3 585 aa14.61□□□□□ -0.07
PROM1-215ENST00000513448 SOGA1O94964 1423 aa14.6□□□□□ -0.07
PROM1-215ENST00000513448 HMGXB3Q12766 1538 aa14.6□□□□□ -0.07
PROM1-215ENST00000513448 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
PROM1-215ENST00000513448 EHMT2Q96KQ7 1210 aa14.56□□□□□ -0.08
PROM1-215ENST00000513448 GOLGA3Q08378 1498 aa14.54□□□□□ -0.08
PROM1-215ENST00000513448 SYNJ1O43426 1573 aa14.53□□□□□ -0.08
PROM1-215ENST00000513448 CEP162Q5TB80 1403 aa14.52□□□□□ -0.08
PROM1-215ENST00000513448 RUSC2Q8N2Y8 1516 aa14.5□□□□□ -0.09
PROM1-215ENST00000513448 CEP164Q9UPV0 1460 aa14.49□□□□□ -0.09
PROM1-215ENST00000513448 KIF21BO75037 1637 aa14.49□□□□□ -0.09
PROM1-215ENST00000513448 TOP2BQ02880 1626 aa14.47□□□□□ -0.09
PROM1-215ENST00000513448 PPARGC1BQ86YN6 1023 aaKnown RBP14.45□□□□□ -0.1
PROM1-215ENST00000513448 UBTFP17480 764 aaKnown RBP14.44□□□□□ -0.1
PROM1-215ENST00000513448 BIVM-ERCC5R4GMW8 1640 aa14.44□□□□□ -0.1
PROM1-215ENST00000513448 CFTRP13569 1480 aa14.4□□□□□ -0.1
PROM1-215ENST00000513448 ERICH3Q5RHP9 1530 aa14.32□□□□□ -0.12
PROM1-215ENST00000513448 CLIP1P30622 1438 aa14.31□□□□□ -0.12
PROM1-215ENST00000513448 PRDM2Q13029 1718 aa14.31□□□□□ -0.12
PROM1-215ENST00000513448 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
PROM1-215ENST00000513448 CUX1P39880 1505 aa14.29□□□□□ -0.12
PROM1-215ENST00000513448 PRXQ9BXM0 1461 aa14.28□□□□□ -0.12
PROM1-215ENST00000513448 VPS8Q8N3P4 1428 aa14.27□□□□□ -0.13
PROM1-215ENST00000513448 KIF27Q86VH2 1401 aa14.26□□□□□ -0.13
PROM1-215ENST00000513448 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
PROM1-215ENST00000513448 CCER1Q8TC90 406 aaPredicted RBP14.19□□□□□ -0.14
PROM1-215ENST00000513448 CC2D2AQ9P2K1 1620 aa14.19□□□□□ -0.14
PROM1-215ENST00000513448 APLP2Q06481 763 aa14.17□□□□□ -0.14
PROM1-215ENST00000513448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
PROM1-215ENST00000513448 TTBK1Q5TCY1 1321 aaPredicted RBP14.08□□□□□ -0.16
PROM1-215ENST00000513448 IGF1RP08069 1367 aa14.08□□□□□ -0.16
PROM1-215ENST00000513448 CUX2O14529 1486 aa14.07□□□□□ -0.16
PROM1-215ENST00000513448 ARAP1Q96P48 1450 aa14.07□□□□□ -0.16
PROM1-215ENST00000513448 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
PROM1-215ENST00000513448 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
PROM1-215ENST00000513448 DNMBPQ6XZF7 1577 aa14.03□□□□□ -0.16
PROM1-215ENST00000513448 CARMIL1Q5VZK9 1371 aa14.02□□□□□ -0.17
PROM1-215ENST00000513448 ARHGAP35Q9NRY4 1499 aa14□□□□□ -0.17
PROM1-215ENST00000513448 LAMC3Q9Y6N6 1575 aa14□□□□□ -0.17
PROM1-215ENST00000513448 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
PROM1-215ENST00000513448 RANGAP1P46060 587 aaPredicted RBP13.98□□□□□ -0.17
PROM1-215ENST00000513448 MAP3K1Q13233 1512 aa13.98□□□□□ -0.17
PROM1-215ENST00000513448 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
PROM1-215ENST00000513448 CLSPNQ9HAW4 1339 aa13.95□□□□□ -0.18
PROM1-215ENST00000513448 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
PROM1-215ENST00000513448 POLA1P09884 1462 aaPredicted RBP13.94□□□□□ -0.18
PROM1-215ENST00000513448 RRBP1Q9P2E9 1410 aaKnown RBP13.94□□□□□ -0.18
PROM1-215ENST00000513448 CUL7Q14999 1698 aa13.91□□□□□ -0.18
PROM1-215ENST00000513448 FHAD1B1AJZ9 1412 aa13.91□□□□□ -0.18
PROM1-215ENST00000513448 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.18
PROM1-215ENST00000513448 KANK4Q5T7N3 995 aaPredicted RBP13.9□□□□□ -0.18
PROM1-215ENST00000513448 NESP48681 1621 aa13.89□□□□□ -0.19
PROM1-215ENST00000513448 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
PROM1-215ENST00000513448 EFCAB5A4FU69 1503 aa13.87□□□□□ -0.19
PROM1-215ENST00000513448 TIAM1Q13009 1591 aa13.85□□□□□ -0.19
PROM1-215ENST00000513448 DIEXFQ68CQ4 756 aaKnown RBP13.85□□□□□ -0.19
PROM1-215ENST00000513448 CCNB3Q8WWL7 1395 aa13.84□□□□□ -0.19
PROM1-215ENST00000513448 WDR97A6NE52 1622 aa13.84□□□□□ -0.19
PROM1-215ENST00000513448 URB2Q14146 1524 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms