RNA–Protein interactions for RNA: ENST00000509599.5

PTPN20-221, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 945 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-221ENST00000509599 AEBP2Q6ZN18 517 aaPredicted RBP30.14■■■□□ 2.42
PTPN20-221ENST00000509599 CHIC1Q5VXU3 224 aa28.6■■■□□ 2.17
PTPN20-221ENST00000509599 SENP3Q9H4L4 574 aaPredicted RBP25.74■■□□□ 1.71
PTPN20-221ENST00000509599 PHF23Q9BUL5 403 aaPredicted RBP25.39■■□□□ 1.66
PTPN20-221ENST00000509599 NISCHQ9Y2I1 1504 aa25.33■■□□□ 1.65
PTPN20-221ENST00000509599 ABCC9O60706 1549 aa24.02■■□□□ 1.44
PTPN20-221ENST00000509599 FOXD1Q16676 465 aa23.98■■□□□ 1.43
PTPN20-221ENST00000509599 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
PTPN20-221ENST00000509599 CCDC180Q9P1Z9 1646 aa23.19■■□□□ 1.3
PTPN20-221ENST00000509599 PLPPR3Q6T4P5 718 aa22.86■■□□□ 1.25
PTPN20-221ENST00000509599 MSH5O43196 834 aa22.46■■□□□ 1.19
PTPN20-221ENST00000509599 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
PTPN20-221ENST00000509599 PIAS4Q8N2W9 510 aaPredicted RBP22.45■■□□□ 1.18
PTPN20-221ENST00000509599 PPP6R1Q9UPN7 881 aa22.39■■□□□ 1.17
PTPN20-221ENST00000509599 ADRA2BP18089 450 aa22.35■■□□□ 1.17
PTPN20-221ENST00000509599 PABPN1Q86U42 306 aaKnown RBP eCLIP22.18■■□□□ 1.14
PTPN20-221ENST00000509599 UNC13AQ9UPW8 1703 aa22.12■■□□□ 1.13
PTPN20-221ENST00000509599 NACADO15069 1562 aa22.08■■□□□ 1.13
PTPN20-221ENST00000509599 DNAJC5Q9H3Z4 198 aa22.08■■□□□ 1.13
PTPN20-221ENST00000509599 POTEDQ86YR6 584 aa21.97■■□□□ 1.11
PTPN20-221ENST00000509599 BICRAQ9NZM4 1560 aa21.92■■□□□ 1.1
PTPN20-221ENST00000509599 CECR2Q9BXF3 1484 aa21.71■■□□□ 1.07
PTPN20-221ENST00000509599 CC2D2AQ9P2K1 1620 aa21.69■■□□□ 1.06
PTPN20-221ENST00000509599 DCAF8L2P0C7V8 631 aa21.68■■□□□ 1.06
PTPN20-221ENST00000509599 MYO15BQ96JP2 1530 aa21.47■■□□□ 1.03
PTPN20-221ENST00000509599 SHROOM4Q9ULL8 1493 aa21.42■■□□□ 1.02
PTPN20-221ENST00000509599 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
PTPN20-221ENST00000509599 CUX2O14529 1486 aa21.06■□□□□ 0.96
PTPN20-221ENST00000509599 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
PTPN20-221ENST00000509599 DCAF1Q9Y4B6 1507 aa20.86■□□□□ 0.93
PTPN20-221ENST00000509599 ZCCHC6Q5VYS8 1495 aaKnown RBP20.81■□□□□ 0.92
PTPN20-221ENST00000509599 ERCC6Q03468 1493 aa20.75■□□□□ 0.91
PTPN20-221ENST00000509599 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
PTPN20-221ENST00000509599 MAPK8IP2Q13387 824 aaPredicted RBP20.53■□□□□ 0.88
PTPN20-221ENST00000509599 SCAF1Q9H7N4 1312 aaKnown RBP20.45■□□□□ 0.86
PTPN20-221ENST00000509599 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
PTPN20-221ENST00000509599 NESP48681 1621 aa20.41■□□□□ 0.86
PTPN20-221ENST00000509599 DMRT2Q9Y5R5 561 aa20.39■□□□□ 0.85
PTPN20-221ENST00000509599 NCAPD3P42695 1498 aa20.38■□□□□ 0.85
PTPN20-221ENST00000509599 ATAD2BQ9ULI0 1458 aa20.2■□□□□ 0.82
PTPN20-221ENST00000509599 SMARCA2P51531 1590 aa20.18■□□□□ 0.82
PTPN20-221ENST00000509599 KIF21AQ7Z4S6 1674 aa20.18■□□□□ 0.82
PTPN20-221ENST00000509599 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
PTPN20-221ENST00000509599 LAMC3Q9Y6N6 1575 aa20.09■□□□□ 0.81
PTPN20-221ENST00000509599 BAZ1AQ9NRL2 1556 aaPredicted RBP20.04■□□□□ 0.8
PTPN20-221ENST00000509599 PPP4R3CPQ6ZMV5 832 aa20.03■□□□□ 0.8
PTPN20-221ENST00000509599 SMARCA4P51532 1647 aa20■□□□□ 0.79
PTPN20-221ENST00000509599 PDS5BQ9NTI5 1447 aa19.94■□□□□ 0.78
PTPN20-221ENST00000509599 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
PTPN20-221ENST00000509599 WDR62O43379 1518 aa19.89■□□□□ 0.77
PTPN20-221ENST00000509599 OSCARQ8IYS5 282 aa19.89■□□□□ 0.77
PTPN20-221ENST00000509599 MRC2Q9UBG0 1479 aa19.87■□□□□ 0.77
PTPN20-221ENST00000509599 RIMBP3CA6NJZ7 1639 aa19.85■□□□□ 0.77
PTPN20-221ENST00000509599 RIMBP3BA6NNM3 1639 aa19.85■□□□□ 0.77
PTPN20-221ENST00000509599 RIMBP3Q9UFD9 1639 aa19.85■□□□□ 0.77
PTPN20-221ENST00000509599 PEG3Q9GZU2 1588 aa19.8■□□□□ 0.76
PTPN20-221ENST00000509599 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
PTPN20-221ENST00000509599 DCAF8L1A6NGE4 600 aa19.66■□□□□ 0.74
PTPN20-221ENST00000509599 ARHGEF11O15085 1522 aa19.66■□□□□ 0.74
PTPN20-221ENST00000509599 CNKSR2Q8WXI2 1034 aa19.64■□□□□ 0.73
PTPN20-221ENST00000509599 HOXD11P31277 338 aaPredicted RBP19.6■□□□□ 0.73
PTPN20-221ENST00000509599 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
PTPN20-221ENST00000509599 TRHP20396 242 aaPredicted RBP19.56■□□□□ 0.72
PTPN20-221ENST00000509599 MROH2BQ7Z745 1585 aa19.53■□□□□ 0.72
PTPN20-221ENST00000509599 FANCD2Q9BXW9 1451 aa19.5■□□□□ 0.71
PTPN20-221ENST00000509599 CYB5RLQ6IPT4 315 aa19.5■□□□□ 0.71
PTPN20-221ENST00000509599 RNF216Q9NWF9 866 aaPredicted RBP19.47■□□□□ 0.71
PTPN20-221ENST00000509599 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
PTPN20-221ENST00000509599 ARAP1Q96P48 1450 aa19.41■□□□□ 0.7
PTPN20-221ENST00000509599 ZNF608Q9ULD9 1512 aaPredicted RBP19.34■□□□□ 0.69
PTPN20-221ENST00000509599 CACNB1Q02641 598 aaPredicted RBP19.33■□□□□ 0.68
PTPN20-221ENST00000509599 CFTRP13569 1480 aa19.31■□□□□ 0.68
PTPN20-221ENST00000509599 CHD1O14646 1710 aa19.3■□□□□ 0.68
PTPN20-221ENST00000509599 WIZO95785 1651 aa19.29■□□□□ 0.68
PTPN20-221ENST00000509599 NCBP3Q53F19 620 aaKnown RBP19.27■□□□□ 0.68
PTPN20-221ENST00000509599 IFT140Q96RY7 1462 aa19.22■□□□□ 0.67
PTPN20-221ENST00000509599 EIF4G3O43432 1585 aaKnown RBP19.21■□□□□ 0.67
PTPN20-221ENST00000509599 RSF1Q96T23 1441 aaPredicted RBP19.2■□□□□ 0.66
PTPN20-221ENST00000509599 PRDM2Q13029 1718 aa19.17■□□□□ 0.66
PTPN20-221ENST00000509599 RNF39Q9H2S5 420 aa19.15■□□□□ 0.66
PTPN20-221ENST00000509599 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
PTPN20-221ENST00000509599 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.64
PTPN20-221ENST00000509599 ILDR1Q86SU0 546 aaPredicted RBP19.02■□□□□ 0.64
PTPN20-221ENST00000509599 FBLN2P98095 1184 aa19.01■□□□□ 0.63
PTPN20-221ENST00000509599 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
PTPN20-221ENST00000509599 CLASP1Q7Z460 1538 aa19■□□□□ 0.63
PTPN20-221ENST00000509599 NPM3O75607 178 aaKnown RBP18.98■□□□□ 0.63
PTPN20-221ENST00000509599 TOP2AP11388 1531 aaKnown RBP18.93■□□□□ 0.62
PTPN20-221ENST00000509599 DNMBPQ6XZF7 1577 aa18.9■□□□□ 0.62
PTPN20-221ENST00000509599 ABCC8Q09428 1581 aa18.89■□□□□ 0.62
PTPN20-221ENST00000509599 C1QBPQ07021 282 aaKnown RBP18.87■□□□□ 0.61
PTPN20-221ENST00000509599 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
PTPN20-221ENST00000509599 GAPVD1Q14C86 1478 aa18.82■□□□□ 0.6
PTPN20-221ENST00000509599 SNAPC4Q5SXM2 1469 aa18.8■□□□□ 0.6
PTPN20-221ENST00000509599 POLA1P09884 1462 aaPredicted RBP18.79■□□□□ 0.6
PTPN20-221ENST00000509599 KIF13AQ9H1H9 1805 aa18.78■□□□□ 0.6
PTPN20-221ENST00000509599 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.76■□□□□ 0.59
PTPN20-221ENST00000509599 RAD54L2Q9Y4B4 1467 aa18.75■□□□□ 0.59
PTPN20-221ENST00000509599 TDRD9Q8NDG6 1382 aaKnown RBP18.74■□□□□ 0.59
PTPN20-221ENST00000509599 CHMP7Q8WUX9 453 aaPredicted RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms