RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 NISCHQ9Y2I1 1504 aa32.09■■■□□ 2.73
PDLIM3-204ENST00000504011 SHROOM4Q9ULL8 1493 aa27.74■■■□□ 2.03
PDLIM3-204ENST00000504011 DCAF8L2P0C7V8 631 aa27.4■■□□□ 1.98
PDLIM3-204ENST00000504011 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
PDLIM3-204ENST00000504011 SUPT5HO00267 1087 aaKnown RBP27.06■■□□□ 1.92
PDLIM3-204ENST00000504011 ZCCHC6Q5VYS8 1495 aaKnown RBP27.04■■□□□ 1.92
PDLIM3-204ENST00000504011 DCAF1Q9Y4B6 1507 aa26.05■■□□□ 1.76
PDLIM3-204ENST00000504011 ABCC9O60706 1549 aa25.98■■□□□ 1.75
PDLIM3-204ENST00000504011 CHIC1Q5VXU3 224 aa25.9■■□□□ 1.74
PDLIM3-204ENST00000504011 SCRIBQ14160 1630 aa25.85■■□□□ 1.73
PDLIM3-204ENST00000504011 MYO15BQ96JP2 1530 aa25.73■■□□□ 1.71
PDLIM3-204ENST00000504011 RSF1Q96T23 1441 aaPredicted RBP25.4■■□□□ 1.66
PDLIM3-204ENST00000504011 LOC105371045A0A1W2PR82 267 aa25.37■■□□□ 1.65
PDLIM3-204ENST00000504011 NACADO15069 1562 aa25.29■■□□□ 1.64
PDLIM3-204ENST00000504011 CECR2Q9BXF3 1484 aa25.28■■□□□ 1.64
PDLIM3-204ENST00000504011 EHMT2Q96KQ7 1210 aa25.15■■□□□ 1.62
PDLIM3-204ENST00000504011 RB1CC1Q8TDY2 1594 aa25.12■■□□□ 1.61
PDLIM3-204ENST00000504011 FAM9AQ8IZU1 332 aaPredicted RBP25.12■■□□□ 1.61
PDLIM3-204ENST00000504011 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
PDLIM3-204ENST00000504011 TRIM41Q8WV44 630 aa25.05■■□□□ 1.6
PDLIM3-204ENST00000504011 PCGF6Q9BYE7 350 aa25.03■■□□□ 1.6
PDLIM3-204ENST00000504011 PABPN1Q86U42 306 aaKnown RBP eCLIP24.97■■□□□ 1.59
PDLIM3-204ENST00000504011 WIZO95785 1651 aa24.92■■□□□ 1.58
PDLIM3-204ENST00000504011 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
PDLIM3-204ENST00000504011 BAZ1AQ9NRL2 1556 aaPredicted RBP24.63■■□□□ 1.53
PDLIM3-204ENST00000504011 HRCP23327 699 aa24.55■■□□□ 1.52
PDLIM3-204ENST00000504011 SMARCA4P51532 1647 aa24.48■■□□□ 1.51
PDLIM3-204ENST00000504011 PPARGC1BQ86YN6 1023 aaKnown RBP24.45■■□□□ 1.51
PDLIM3-204ENST00000504011 CCDC88BA6NC98 1476 aa24.41■■□□□ 1.5
PDLIM3-204ENST00000504011 BICRAQ9NZM4 1560 aa24.39■■□□□ 1.5
PDLIM3-204ENST00000504011 ABCC8Q09428 1581 aa24.38■■□□□ 1.49
PDLIM3-204ENST00000504011 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
PDLIM3-204ENST00000504011 TRIM26Q12899 539 aaPredicted RBP24.34■■□□□ 1.49
PDLIM3-204ENST00000504011 SMARCA2P51531 1590 aa24.27■■□□□ 1.48
PDLIM3-204ENST00000504011 TTBK1Q5TCY1 1321 aaPredicted RBP24.2■■□□□ 1.46
PDLIM3-204ENST00000504011 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.46
PDLIM3-204ENST00000504011 SOGA1O94964 1423 aa24.11■■□□□ 1.45
PDLIM3-204ENST00000504011 RUSC2Q8N2Y8 1516 aa24.04■■□□□ 1.44
PDLIM3-204ENST00000504011 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
PDLIM3-204ENST00000504011 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
PDLIM3-204ENST00000504011 BAZ1BQ9UIG0 1483 aaKnown RBP23.97■■□□□ 1.43
PDLIM3-204ENST00000504011 RANGAP1P46060 587 aaPredicted RBP23.91■■□□□ 1.42
PDLIM3-204ENST00000504011 CSRNP3Q8WYN3 585 aa23.91■■□□□ 1.42
PDLIM3-204ENST00000504011 WRNQ14191 1432 aaPredicted RBP eCLIP23.89■■□□□ 1.41
PDLIM3-204ENST00000504011 PEG3Q9GZU2 1588 aa23.84■■□□□ 1.41
PDLIM3-204ENST00000504011 CEP162Q5TB80 1403 aa23.76■■□□□ 1.39
PDLIM3-204ENST00000504011 SYNJ1O43426 1573 aa23.75■■□□□ 1.39
PDLIM3-204ENST00000504011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.72■■□□□ 1.39
PDLIM3-204ENST00000504011 TNIKQ9UKE5 1360 aa23.63■■□□□ 1.37
PDLIM3-204ENST00000504011 EEA1Q15075 1411 aa23.56■■□□□ 1.36
PDLIM3-204ENST00000504011 GOLGA3Q08378 1498 aa23.56■■□□□ 1.36
PDLIM3-204ENST00000504011 CCER1Q8TC90 406 aaPredicted RBP23.54■■□□□ 1.36
PDLIM3-204ENST00000504011 ZEB1P37275 1124 aaPredicted RBP23.51■■□□□ 1.35
PDLIM3-204ENST00000504011 NCAPD3P42695 1498 aa23.49■■□□□ 1.35
PDLIM3-204ENST00000504011 RAPGEF2Q9Y4G8 1499 aa23.47■■□□□ 1.35
PDLIM3-204ENST00000504011 CEP164Q9UPV0 1460 aa23.43■■□□□ 1.34
PDLIM3-204ENST00000504011 CLIP1P30622 1438 aa23.39■■□□□ 1.33
PDLIM3-204ENST00000504011 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
PDLIM3-204ENST00000504011 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
PDLIM3-204ENST00000504011 TOP2BQ02880 1626 aa23.34■■□□□ 1.33
PDLIM3-204ENST00000504011 CUX1P39880 1505 aa23.32■■□□□ 1.32
PDLIM3-204ENST00000504011 APLP2Q06481 763 aa23.29■■□□□ 1.32
PDLIM3-204ENST00000504011 KIF21BO75037 1637 aa23.27■■□□□ 1.32
PDLIM3-204ENST00000504011 CFTRP13569 1480 aa23.26■■□□□ 1.31
PDLIM3-204ENST00000504011 CC2D2AQ9P2K1 1620 aa23.18■■□□□ 1.3
PDLIM3-204ENST00000504011 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
PDLIM3-204ENST00000504011 VPS8Q8N3P4 1428 aa23.16■■□□□ 1.3
PDLIM3-204ENST00000504011 CADPSQ9ULU8 1353 aa23.15■■□□□ 1.3
PDLIM3-204ENST00000504011 KIF27Q86VH2 1401 aa23.14■■□□□ 1.29
PDLIM3-204ENST00000504011 DNAJC5BQ9UF47 199 aa23.13■■□□□ 1.29
PDLIM3-204ENST00000504011 PRXQ9BXM0 1461 aa23.1■■□□□ 1.29
PDLIM3-204ENST00000504011 CUX2O14529 1486 aa23.08■■□□□ 1.29
PDLIM3-204ENST00000504011 KANK4Q5T7N3 995 aaPredicted RBP23.08■■□□□ 1.28
PDLIM3-204ENST00000504011 NESP48681 1621 aa23.05■■□□□ 1.28
PDLIM3-204ENST00000504011 P3H3Q8IVL6 736 aa23.02■■□□□ 1.28
PDLIM3-204ENST00000504011 FGD5Q6ZNL6 1462 aa22.99■■□□□ 1.27
PDLIM3-204ENST00000504011 ARAP1Q96P48 1450 aa22.99■■□□□ 1.27
PDLIM3-204ENST00000504011 IGF1RP08069 1367 aa22.97■■□□□ 1.27
PDLIM3-204ENST00000504011 ITGAEP38570 1179 aa22.97■■□□□ 1.27
PDLIM3-204ENST00000504011 ATP1B4Q9UN42 357 aaPredicted RBP22.96■■□□□ 1.27
PDLIM3-204ENST00000504011 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
PDLIM3-204ENST00000504011 ERICH3Q5RHP9 1530 aa22.94■■□□□ 1.26
PDLIM3-204ENST00000504011 RAD54L2Q9Y4B4 1467 aa22.92■■□□□ 1.26
PDLIM3-204ENST00000504011 CARMIL1Q5VZK9 1371 aa22.9■■□□□ 1.26
PDLIM3-204ENST00000504011 ARHGAP35Q9NRY4 1499 aa22.85■■□□□ 1.25
PDLIM3-204ENST00000504011 DIEXFQ68CQ4 756 aaKnown RBP22.83■■□□□ 1.25
PDLIM3-204ENST00000504011 PRDM2Q13029 1718 aa22.8■■□□□ 1.24
PDLIM3-204ENST00000504011 POLA1P09884 1462 aaPredicted RBP22.74■■□□□ 1.23
PDLIM3-204ENST00000504011 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
PDLIM3-204ENST00000504011 TOPBP1Q92547 1522 aa22.73■■□□□ 1.23
PDLIM3-204ENST00000504011 ZNF316A6NFI3 1004 aaPredicted RBP22.66■■□□□ 1.22
PDLIM3-204ENST00000504011 DNMBPQ6XZF7 1577 aa22.64■■□□□ 1.21
PDLIM3-204ENST00000504011 FHOD3Q2V2M9 1422 aa22.63■■□□□ 1.21
PDLIM3-204ENST00000504011 URB2Q14146 1524 aaKnown RBP22.63■■□□□ 1.21
PDLIM3-204ENST00000504011 FAM50AQ14320 339 aaKnown RBP22.62■■□□□ 1.21
PDLIM3-204ENST00000504011 CCNB3Q8WWL7 1395 aa22.58■■□□□ 1.21
PDLIM3-204ENST00000504011 ABCA10Q8WWZ4 1543 aa22.56■■□□□ 1.2
PDLIM3-204ENST00000504011 YTHDC1Q96MU7 727 aaKnown RBP22.56■■□□□ 1.2
PDLIM3-204ENST00000504011 SCAF1Q9H7N4 1312 aaKnown RBP22.55■■□□□ 1.2
PDLIM3-204ENST00000504011 DHX57Q6P158 1386 aaKnown RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms