RNA–Protein interactions for RNA: ENST00000502818.5

CPNE4-202, Transcript of copine 4, humanhuman

TSL 5 BASIC

Gene CPNE4, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-202ENST00000502818 POTEDQ86YR6 584 aa18.43■□□□□ 0.54
CPNE4-202ENST00000502818 AEBP2Q6ZN18 517 aaPredicted RBP16.77■□□□□ 0.28
CPNE4-202ENST00000502818 NISCHQ9Y2I1 1504 aa16.58■□□□□ 0.24
CPNE4-202ENST00000502818 CHIC1Q5VXU3 224 aa16.12■□□□□ 0.17
CPNE4-202ENST00000502818 SENP3Q9H4L4 574 aaPredicted RBP15.19■□□□□ 0.02
CPNE4-202ENST00000502818 MSH5O43196 834 aa14.65□□□□□ -0.06
CPNE4-202ENST00000502818 PHF23Q9BUL5 403 aaPredicted RBP14.36□□□□□ -0.11
CPNE4-202ENST00000502818 CCDC180Q9P1Z9 1646 aa14.33□□□□□ -0.12
CPNE4-202ENST00000502818 FOXD1Q16676 465 aa14.15□□□□□ -0.14
CPNE4-202ENST00000502818 CACNB1Q02641 598 aaPredicted RBP14.01□□□□□ -0.17
CPNE4-202ENST00000502818 POTEHQ6S545 545 aa13.99□□□□□ -0.17
CPNE4-202ENST00000502818 ZCCHC6Q5VYS8 1495 aaKnown RBP13.92□□□□□ -0.18
CPNE4-202ENST00000502818 DCAF8L2P0C7V8 631 aa13.84□□□□□ -0.19
CPNE4-202ENST00000502818 ABCC9O60706 1549 aa13.77□□□□□ -0.21
CPNE4-202ENST00000502818 SHROOM4Q9ULL8 1493 aa13.71□□□□□ -0.21
CPNE4-202ENST00000502818 DCAF1Q9Y4B6 1507 aa13.6□□□□□ -0.23
CPNE4-202ENST00000502818 MYO15BQ96JP2 1530 aa13.42□□□□□ -0.26
CPNE4-202ENST00000502818 NACADO15069 1562 aa13.38□□□□□ -0.27
CPNE4-202ENST00000502818 SCRIBQ14160 1630 aa13.35□□□□□ -0.27
CPNE4-202ENST00000502818 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.28
CPNE4-202ENST00000502818 SUPT5HO00267 1087 aaKnown RBP13.16□□□□□ -0.3
CPNE4-202ENST00000502818 UNC13AQ9UPW8 1703 aa13.07□□□□□ -0.32
CPNE4-202ENST00000502818 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
CPNE4-202ENST00000502818 CECR2Q9BXF3 1484 aa13□□□□□ -0.33
CPNE4-202ENST00000502818 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
CPNE4-202ENST00000502818 RSF1Q96T23 1441 aaPredicted RBP12.92□□□□□ -0.34
CPNE4-202ENST00000502818 MROH2BQ7Z745 1585 aa12.88□□□□□ -0.35
CPNE4-202ENST00000502818 WIZO95785 1651 aa12.76□□□□□ -0.37
CPNE4-202ENST00000502818 BAZ1AQ9NRL2 1556 aaPredicted RBP12.75□□□□□ -0.37
CPNE4-202ENST00000502818 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
CPNE4-202ENST00000502818 PIAS4Q8N2W9 510 aaPredicted RBP12.7□□□□□ -0.38
CPNE4-202ENST00000502818 PLSCR2Q9NRY7 297 aa12.62□□□□□ -0.39
CPNE4-202ENST00000502818 EIF4G1Q04637 1599 aaKnown RBP12.56□□□□□ -0.4
CPNE4-202ENST00000502818 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
CPNE4-202ENST00000502818 TOP2AP11388 1531 aaKnown RBP12.55□□□□□ -0.4
CPNE4-202ENST00000502818 PEG3Q9GZU2 1588 aa12.52□□□□□ -0.4
CPNE4-202ENST00000502818 CCDC88BA6NC98 1476 aa12.5□□□□□ -0.41
CPNE4-202ENST00000502818 DNAJC5BQ9UF47 199 aa12.47□□□□□ -0.41
CPNE4-202ENST00000502818 SMARCA2P51531 1590 aa12.47□□□□□ -0.41
CPNE4-202ENST00000502818 BAZ1BQ9UIG0 1483 aaKnown RBP12.46□□□□□ -0.42
CPNE4-202ENST00000502818 NCAPD3P42695 1498 aa12.41□□□□□ -0.42
CPNE4-202ENST00000502818 CC2D2AQ9P2K1 1620 aa12.4□□□□□ -0.43
CPNE4-202ENST00000502818 HMGXB3Q12766 1538 aa12.34□□□□□ -0.43
CPNE4-202ENST00000502818 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
CPNE4-202ENST00000502818 ABCC8Q09428 1581 aa12.27□□□□□ -0.45
CPNE4-202ENST00000502818 FAM9AQ8IZU1 332 aaPredicted RBP12.19□□□□□ -0.46
CPNE4-202ENST00000502818 LOC105371045A0A1W2PR82 267 aa12.17□□□□□ -0.46
CPNE4-202ENST00000502818 CFTRP13569 1480 aa12.15□□□□□ -0.46
CPNE4-202ENST00000502818 CADPSQ9ULU8 1353 aa12.12□□□□□ -0.47
CPNE4-202ENST00000502818 NESP48681 1621 aa12.12□□□□□ -0.47
CPNE4-202ENST00000502818 WRNQ14191 1432 aaPredicted RBP eCLIP12.12□□□□□ -0.47
CPNE4-202ENST00000502818 SYNJ1O43426 1573 aa12.1□□□□□ -0.47
CPNE4-202ENST00000502818 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
CPNE4-202ENST00000502818 SOGA1O94964 1423 aa12.06□□□□□ -0.48
CPNE4-202ENST00000502818 RUSC2Q8N2Y8 1516 aa12.05□□□□□ -0.48
CPNE4-202ENST00000502818 RNF39Q9H2S5 420 aa12.03□□□□□ -0.48
CPNE4-202ENST00000502818 CUX1P39880 1505 aa12.02□□□□□ -0.48
CPNE4-202ENST00000502818 DNAJC5Q9H3Z4 198 aa12.02□□□□□ -0.49
CPNE4-202ENST00000502818 FANCD2Q9BXW9 1451 aa11.99□□□□□ -0.49
CPNE4-202ENST00000502818 TOP2BQ02880 1626 aa11.98□□□□□ -0.49
CPNE4-202ENST00000502818 PRDM2Q13029 1718 aa11.97□□□□□ -0.49
CPNE4-202ENST00000502818 BIVM-ERCC5R4GMW8 1640 aa11.94□□□□□ -0.5
CPNE4-202ENST00000502818 SP7Q8TDD2 431 aaPredicted RBP11.93□□□□□ -0.5
CPNE4-202ENST00000502818 LAMC3Q9Y6N6 1575 aa11.93□□□□□ -0.5
CPNE4-202ENST00000502818 CSRNP3Q8WYN3 585 aa11.9□□□□□ -0.5
CPNE4-202ENST00000502818 C1QBPQ07021 282 aaKnown RBP11.9□□□□□ -0.5
CPNE4-202ENST00000502818 URB2Q14146 1524 aaKnown RBP11.88□□□□□ -0.51
CPNE4-202ENST00000502818 FGD5Q6ZNL6 1462 aa11.88□□□□□ -0.51
CPNE4-202ENST00000502818 CEP164Q9UPV0 1460 aa11.88□□□□□ -0.51
CPNE4-202ENST00000502818 KIF21AQ7Z4S6 1674 aa11.87□□□□□ -0.51
CPNE4-202ENST00000502818 PDS5BQ9NTI5 1447 aa11.87□□□□□ -0.51
CPNE4-202ENST00000502818 TOPBP1Q92547 1522 aa11.86□□□□□ -0.51
CPNE4-202ENST00000502818 RAD54L2Q9Y4B4 1467 aa11.85□□□□□ -0.51
CPNE4-202ENST00000502818 EEA1Q15075 1411 aa11.83□□□□□ -0.52
CPNE4-202ENST00000502818 DNMBPQ6XZF7 1577 aa11.83□□□□□ -0.52
CPNE4-202ENST00000502818 POLA1P09884 1462 aaPredicted RBP11.82□□□□□ -0.52
CPNE4-202ENST00000502818 CUX2O14529 1486 aa11.8□□□□□ -0.52
CPNE4-202ENST00000502818 RAPGEF2Q9Y4G8 1499 aa11.78□□□□□ -0.52
CPNE4-202ENST00000502818 KIF27Q86VH2 1401 aa11.77□□□□□ -0.52
CPNE4-202ENST00000502818 UBTFP17480 764 aaKnown RBP11.77□□□□□ -0.52
CPNE4-202ENST00000502818 IGF1RP08069 1367 aa11.76□□□□□ -0.53
CPNE4-202ENST00000502818 MRC2Q9UBG0 1479 aa11.75□□□□□ -0.53
CPNE4-202ENST00000502818 GOLGA3Q08378 1498 aa11.74□□□□□ -0.53
CPNE4-202ENST00000502818 TDRD9Q8NDG6 1382 aaKnown RBP11.73□□□□□ -0.53
CPNE4-202ENST00000502818 PRXQ9BXM0 1461 aa11.73□□□□□ -0.53
CPNE4-202ENST00000502818 TNIKQ9UKE5 1360 aa11.73□□□□□ -0.53
CPNE4-202ENST00000502818 ERCC6Q03468 1493 aa11.73□□□□□ -0.53
CPNE4-202ENST00000502818 ABCA10Q8WWZ4 1543 aa11.72□□□□□ -0.53
CPNE4-202ENST00000502818 KIF21BO75037 1637 aa11.72□□□□□ -0.53
CPNE4-202ENST00000502818 RANGAP1P46060 587 aaPredicted RBP11.71□□□□□ -0.53
CPNE4-202ENST00000502818 CEP162Q5TB80 1403 aa11.7□□□□□ -0.54
CPNE4-202ENST00000502818 WDR62O43379 1518 aa11.67□□□□□ -0.54
CPNE4-202ENST00000502818 TARBP1Q13395 1621 aaKnown RBP11.67□□□□□ -0.54
CPNE4-202ENST00000502818 WDR97A6NE52 1622 aa11.67□□□□□ -0.54
CPNE4-202ENST00000502818 THOC2Q8NI27 1593 aaKnown RBP11.66□□□□□ -0.54
CPNE4-202ENST00000502818 CARMIL1Q5VZK9 1371 aa11.66□□□□□ -0.54
CPNE4-202ENST00000502818 AQRO60306 1485 aaKnown RBP eCLIP11.65□□□□□ -0.54
CPNE4-202ENST00000502818 ZNF608Q9ULD9 1512 aaPredicted RBP11.65□□□□□ -0.54
CPNE4-202ENST00000502818 PPARGC1BQ86YN6 1023 aaKnown RBP11.65□□□□□ -0.55
CPNE4-202ENST00000502818 GAPVD1Q14C86 1478 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms