RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 NISCHQ9Y2I1 1504 aa34.53■■■■□ 3.12
COL6A1-206ENST00000498614 CCDC180Q9P1Z9 1646 aa30.08■■■□□ 2.41
COL6A1-206ENST00000498614 ABCC9O60706 1549 aa29.08■■■□□ 2.25
COL6A1-206ENST00000498614 DCAF8L2P0C7V8 631 aa29.02■■■□□ 2.24
COL6A1-206ENST00000498614 SHROOM4Q9ULL8 1493 aa28.98■■■□□ 2.23
COL6A1-206ENST00000498614 ZCCHC6Q5VYS8 1495 aaKnown RBP28.91■■■□□ 2.22
COL6A1-206ENST00000498614 DCAF1Q9Y4B6 1507 aa28.38■■■□□ 2.13
COL6A1-206ENST00000498614 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
COL6A1-206ENST00000498614 NACADO15069 1562 aa28.15■■■□□ 2.1
COL6A1-206ENST00000498614 MYO15BQ96JP2 1530 aa28.12■■■□□ 2.09
COL6A1-206ENST00000498614 RB1CC1Q8TDY2 1594 aa28.02■■■□□ 2.08
COL6A1-206ENST00000498614 SCRIBQ14160 1630 aa27.88■■■□□ 2.05
COL6A1-206ENST00000498614 UNC13AQ9UPW8 1703 aa27.51■■□□□ 1.99
COL6A1-206ENST00000498614 PABPN1Q86U42 306 aaKnown RBP eCLIP27.48■■□□□ 1.991e-11■■□□□ 13.7
COL6A1-206ENST00000498614 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
COL6A1-206ENST00000498614 BICRAQ9NZM4 1560 aa27.26■■□□□ 1.95
COL6A1-206ENST00000498614 HRCP23327 699 aa27.2■■□□□ 1.95
COL6A1-206ENST00000498614 CECR2Q9BXF3 1484 aa27.01■■□□□ 1.91
COL6A1-206ENST00000498614 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
COL6A1-206ENST00000498614 PCGF6Q9BYE7 350 aa26.91■■□□□ 1.9
COL6A1-206ENST00000498614 MROH2BQ7Z745 1585 aa26.75■■□□□ 1.87
COL6A1-206ENST00000498614 LOC105371045A0A1W2PR82 267 aa26.65■■□□□ 1.86
COL6A1-206ENST00000498614 PPARGC1BQ86YN6 1023 aaKnown RBP26.64■■□□□ 1.86
COL6A1-206ENST00000498614 BAZ1AQ9NRL2 1556 aaPredicted RBP26.64■■□□□ 1.86
COL6A1-206ENST00000498614 SMARCA4P51532 1647 aa26.6■■□□□ 1.85
COL6A1-206ENST00000498614 WIZO95785 1651 aa26.52■■□□□ 1.84
COL6A1-206ENST00000498614 EIF4G1Q04637 1599 aaKnown RBP26.47■■□□□ 1.83
COL6A1-206ENST00000498614 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
COL6A1-206ENST00000498614 ATAD2BQ9ULI0 1458 aa26.28■■□□□ 1.8
COL6A1-206ENST00000498614 TRIM26Q12899 539 aaPredicted RBP26.23■■□□□ 1.79
COL6A1-206ENST00000498614 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
COL6A1-206ENST00000498614 FAM9AQ8IZU1 332 aaPredicted RBP26.19■■□□□ 1.78
COL6A1-206ENST00000498614 PEG3Q9GZU2 1588 aa26.18■■□□□ 1.78
COL6A1-206ENST00000498614 SMARCA2P51531 1590 aa26.16■■□□□ 1.78
COL6A1-206ENST00000498614 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
COL6A1-206ENST00000498614 TOP2AP11388 1531 aaKnown RBP26.1■■□□□ 1.77
COL6A1-206ENST00000498614 DNAJC5BQ9UF47 199 aa26.06■■□□□ 1.76
COL6A1-206ENST00000498614 NCAPD3P42695 1498 aa26.05■■□□□ 1.76
COL6A1-206ENST00000498614 EHMT2Q96KQ7 1210 aa25.99■■□□□ 1.75
COL6A1-206ENST00000498614 CCDC88BA6NC98 1476 aa25.95■■□□□ 1.75
COL6A1-206ENST00000498614 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
COL6A1-206ENST00000498614 ZEB1P37275 1124 aaPredicted RBP25.81■■□□□ 1.72
COL6A1-206ENST00000498614 ABCC8Q09428 1581 aa25.74■■□□□ 1.71
COL6A1-206ENST00000498614 SOGA1O94964 1423 aa25.45■■□□□ 1.66
COL6A1-206ENST00000498614 NESP48681 1621 aa25.44■■□□□ 1.66
COL6A1-206ENST00000498614 CADPSQ9ULU8 1353 aa25.43■■□□□ 1.66
COL6A1-206ENST00000498614 CFTRP13569 1480 aa25.42■■□□□ 1.66
COL6A1-206ENST00000498614 SCAF1Q9H7N4 1312 aaKnown RBP25.4■■□□□ 1.66
COL6A1-206ENST00000498614 RUSC2Q8N2Y8 1516 aa25.34■■□□□ 1.65
COL6A1-206ENST00000498614 WRNQ14191 1432 aaPredicted RBP eCLIP25.3■■□□□ 1.64
COL6A1-206ENST00000498614 PELP1Q8IZL8 1130 aaKnown RBP25.29■■□□□ 1.64
COL6A1-206ENST00000498614 EEA1Q15075 1411 aa25.28■■□□□ 1.64
COL6A1-206ENST00000498614 CSRNP3Q8WYN3 585 aa25.27■■□□□ 1.64
COL6A1-206ENST00000498614 CEP162Q5TB80 1403 aa25.27■■□□□ 1.64
COL6A1-206ENST00000498614 TNIKQ9UKE5 1360 aa25.22■■□□□ 1.63
COL6A1-206ENST00000498614 SYNJ1O43426 1573 aa25.21■■□□□ 1.63
COL6A1-206ENST00000498614 LAMC3Q9Y6N6 1575 aa25.18■■□□□ 1.62
COL6A1-206ENST00000498614 UBTFP17480 764 aaKnown RBP25.17■■□□□ 1.62
COL6A1-206ENST00000498614 FANCD2Q9BXW9 1451 aa25.16■■□□□ 1.62
COL6A1-206ENST00000498614 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.16■■□□□ 1.62
COL6A1-206ENST00000498614 GOLGA3Q08378 1498 aa25.12■■□□□ 1.61
COL6A1-206ENST00000498614 TTBK1Q5TCY1 1321 aaPredicted RBP25.12■■□□□ 1.61
COL6A1-206ENST00000498614 PRDM2Q13029 1718 aa25.11■■□□□ 1.61
COL6A1-206ENST00000498614 CCER1Q8TC90 406 aaPredicted RBP25.08■■□□□ 1.61
COL6A1-206ENST00000498614 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
COL6A1-206ENST00000498614 CUX1P39880 1505 aa25.01■■□□□ 1.59
COL6A1-206ENST00000498614 KIF21AQ7Z4S6 1674 aa25■■□□□ 1.59
COL6A1-206ENST00000498614 CEP164Q9UPV0 1460 aa25■■□□□ 1.59
COL6A1-206ENST00000498614 KIF21BO75037 1637 aa24.97■■□□□ 1.59
COL6A1-206ENST00000498614 ACIN1Q9UKV3 1341 aaKnown RBP24.96■■□□□ 1.59
COL6A1-206ENST00000498614 TOP2BQ02880 1626 aa24.91■■□□□ 1.58
COL6A1-206ENST00000498614 NEUROD1Q13562 356 aa24.91■■□□□ 1.58
COL6A1-206ENST00000498614 ERCC6Q03468 1493 aa24.9■■□□□ 1.58
COL6A1-206ENST00000498614 URB2Q14146 1524 aaKnown RBP24.87■■□□□ 1.57
COL6A1-206ENST00000498614 BIVM-ERCC5R4GMW8 1640 aa24.85■■□□□ 1.57
COL6A1-206ENST00000498614 DIEXFQ68CQ4 756 aaKnown RBP24.85■■□□□ 1.57
COL6A1-206ENST00000498614 RAPGEF2Q9Y4G8 1499 aa24.84■■□□□ 1.57
COL6A1-206ENST00000498614 TOPBP1Q92547 1522 aa24.83■■□□□ 1.57
COL6A1-206ENST00000498614 CLIP1P30622 1438 aa24.82■■□□□ 1.56
COL6A1-206ENST00000498614 FGD5Q6ZNL6 1462 aa24.79■■□□□ 1.56
COL6A1-206ENST00000498614 DNMBPQ6XZF7 1577 aa24.78■■□□□ 1.56
COL6A1-206ENST00000498614 MRC2Q9UBG0 1479 aa24.74■■□□□ 1.55
COL6A1-206ENST00000498614 RANGAP1P46060 587 aaPredicted RBP24.73■■□□□ 1.55
COL6A1-206ENST00000498614 RAD54L2Q9Y4B4 1467 aa24.72■■□□□ 1.55
COL6A1-206ENST00000498614 POLA1P09884 1462 aaPredicted RBP24.72■■□□□ 1.55
COL6A1-206ENST00000498614 GTF3C3Q9Y5Q9 886 aa24.69■■□□□ 1.54
COL6A1-206ENST00000498614 VPS8Q8N3P4 1428 aa24.69■■□□□ 1.54
COL6A1-206ENST00000498614 CENPBP07199 599 aaPredicted RBP24.69■■□□□ 1.54
COL6A1-206ENST00000498614 THOC2Q8NI27 1593 aaKnown RBP24.61■■□□□ 1.53
COL6A1-206ENST00000498614 CUX2O14529 1486 aa24.6■■□□□ 1.53
COL6A1-206ENST00000498614 PRXQ9BXM0 1461 aa24.59■■□□□ 1.53
COL6A1-206ENST00000498614 WDR62O43379 1518 aa24.59■■□□□ 1.53
COL6A1-206ENST00000498614 ERICH3Q5RHP9 1530 aa24.59■■□□□ 1.53
COL6A1-206ENST00000498614 APLP2Q06481 763 aa24.57■■□□□ 1.52
COL6A1-206ENST00000498614 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
COL6A1-206ENST00000498614 HNRNPUL2Q1KMD3 747 aaKnown RBP24.53■■□□□ 1.52
COL6A1-206ENST00000498614 ZNF316A6NFI3 1004 aaPredicted RBP24.53■■□□□ 1.52
COL6A1-206ENST00000498614 KIF27Q86VH2 1401 aa24.53■■□□□ 1.52
COL6A1-206ENST00000498614 ABCA10Q8WWZ4 1543 aa24.48■■□□□ 1.51
COL6A1-206ENST00000498614 ARAP1Q96P48 1450 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms