RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
VPS13B-206ENST00000496144 ABCC9O60706 1549 aa16.93■□□□□ 0.3
VPS13B-206ENST00000496144 DCAF8L2P0C7V8 631 aa16.87■□□□□ 0.29
VPS13B-206ENST00000496144 CCDC180Q9P1Z9 1646 aa16.77■□□□□ 0.28
VPS13B-206ENST00000496144 RB1CC1Q8TDY2 1594 aa16.22■□□□□ 0.19
VPS13B-206ENST00000496144 NACADO15069 1562 aa16.02■□□□□ 0.16
VPS13B-206ENST00000496144 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
VPS13B-206ENST00000496144 MYO15BQ96JP2 1530 aa15.59■□□□□ 0.09
VPS13B-206ENST00000496144 ZCCHC6Q5VYS8 1495 aaKnown RBP15.52■□□□□ 0.07
VPS13B-206ENST00000496144 SCRIBQ14160 1630 aa15.47■□□□□ 0.07
VPS13B-206ENST00000496144 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
VPS13B-206ENST00000496144 SHROOM4Q9ULL8 1493 aa15.43■□□□□ 0.06
VPS13B-206ENST00000496144 CECR2Q9BXF3 1484 aa15.28■□□□□ 0.04
VPS13B-206ENST00000496144 DNAJC5BQ9UF47 199 aa15.25■□□□□ 0.03
VPS13B-206ENST00000496144 ERCC6Q03468 1493 aa15.06■□□□□ 0
VPS13B-206ENST00000496144 CC2D2AQ9P2K1 1620 aa15.06■□□□□ 0
VPS13B-206ENST00000496144 UNC13AQ9UPW8 1703 aa15.04■□□□□ -0
VPS13B-206ENST00000496144 EIF4G1Q04637 1599 aaKnown RBP15.04■□□□□ -0
VPS13B-206ENST00000496144 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
VPS13B-206ENST00000496144 SMARCA2P51531 1590 aa14.87□□□□□ -0.03
VPS13B-206ENST00000496144 BAZ1BQ9UIG0 1483 aaKnown RBP14.84□□□□□ -0.03
VPS13B-206ENST00000496144 BAZ1AQ9NRL2 1556 aaPredicted RBP14.77□□□□□ -0.04
VPS13B-206ENST00000496144 PDS5BQ9NTI5 1447 aa14.7□□□□□ -0.06
VPS13B-206ENST00000496144 NCAPD3P42695 1498 aa14.67□□□□□ -0.06
VPS13B-206ENST00000496144 ATAD2BQ9ULI0 1458 aa14.64□□□□□ -0.07
VPS13B-206ENST00000496144 SMARCA4P51532 1647 aa14.61□□□□□ -0.07
VPS13B-206ENST00000496144 CUX2O14529 1486 aa14.59□□□□□ -0.07
VPS13B-206ENST00000496144 HMGXB3Q12766 1538 aa14.57□□□□□ -0.08
VPS13B-206ENST00000496144 SUPT5HO00267 1087 aaKnown RBP14.49□□□□□ -0.09
VPS13B-206ENST00000496144 FAM9AQ8IZU1 332 aaPredicted RBP14.45□□□□□ -0.1
VPS13B-206ENST00000496144 CADPSQ9ULU8 1353 aa14.44□□□□□ -0.1
VPS13B-206ENST00000496144 LAMC3Q9Y6N6 1575 aa14.42□□□□□ -0.1
VPS13B-206ENST00000496144 CEP164Q9UPV0 1460 aa14.42□□□□□ -0.1
VPS13B-206ENST00000496144 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
VPS13B-206ENST00000496144 FBLN2P98095 1184 aa14.39□□□□□ -0.11
VPS13B-206ENST00000496144 MROH2BQ7Z745 1585 aa14.37□□□□□ -0.11
VPS13B-206ENST00000496144 DNAJC5Q9H3Z4 198 aa14.36□□□□□ -0.11
VPS13B-206ENST00000496144 MRC2Q9UBG0 1479 aa14.36□□□□□ -0.11
VPS13B-206ENST00000496144 OSCARQ8IYS5 282 aa14.3□□□□□ -0.12
VPS13B-206ENST00000496144 NESP48681 1621 aa14.3□□□□□ -0.12
VPS13B-206ENST00000496144 FANCD2Q9BXW9 1451 aa14.28□□□□□ -0.12
VPS13B-206ENST00000496144 TOP2AP11388 1531 aaKnown RBP14.25□□□□□ -0.13
VPS13B-206ENST00000496144 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
VPS13B-206ENST00000496144 ABCC8Q09428 1581 aa14.24□□□□□ -0.13
VPS13B-206ENST00000496144 PEG3Q9GZU2 1588 aa14.23□□□□□ -0.13
VPS13B-206ENST00000496144 WIZO95785 1651 aa14.2□□□□□ -0.14
VPS13B-206ENST00000496144 CHMP7Q8WUX9 453 aaPredicted RBP14.19□□□□□ -0.14
VPS13B-206ENST00000496144 TRHP20396 242 aaPredicted RBP14.14□□□□□ -0.15
VPS13B-206ENST00000496144 CHIC1Q5VXU3 224 aa14.09□□□□□ -0.15
VPS13B-206ENST00000496144 IFT140Q96RY7 1462 aa14.09□□□□□ -0.15
VPS13B-206ENST00000496144 CFTRP13569 1480 aa14.08□□□□□ -0.16
VPS13B-206ENST00000496144 NPM1P06748 294 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS13B-206ENST00000496144 CCDC88BA6NC98 1476 aa14.04□□□□□ -0.16
VPS13B-206ENST00000496144 KIF21AQ7Z4S6 1674 aa14.04□□□□□ -0.16
VPS13B-206ENST00000496144 WDR62O43379 1518 aa14.01□□□□□ -0.17
VPS13B-206ENST00000496144 SOGA1O94964 1423 aa13.98□□□□□ -0.17
VPS13B-206ENST00000496144 THOC2Q8NI27 1593 aaKnown RBP13.97□□□□□ -0.17
VPS13B-206ENST00000496144 AEBP2Q6ZN18 517 aaPredicted RBP13.94□□□□□ -0.18
VPS13B-206ENST00000496144 CYB5RLQ6IPT4 315 aa13.92□□□□□ -0.18
VPS13B-206ENST00000496144 DNMBPQ6XZF7 1577 aa13.89□□□□□ -0.19
VPS13B-206ENST00000496144 TTBK1Q5TCY1 1321 aaPredicted RBP13.88□□□□□ -0.19
VPS13B-206ENST00000496144 TOPBP1Q92547 1522 aa13.88□□□□□ -0.19
VPS13B-206ENST00000496144 WRNQ14191 1432 aaPredicted RBP eCLIP13.87□□□□□ -0.19
VPS13B-206ENST00000496144 URB2Q14146 1524 aaKnown RBP13.84□□□□□ -0.19
VPS13B-206ENST00000496144 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.2
VPS13B-206ENST00000496144 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
VPS13B-206ENST00000496144 PRDM2Q13029 1718 aa13.79□□□□□ -0.2
VPS13B-206ENST00000496144 AQRO60306 1485 aaKnown RBP eCLIP13.79□□□□□ -0.2
VPS13B-206ENST00000496144 SYNJ1O43426 1573 aa13.76□□□□□ -0.21
VPS13B-206ENST00000496144 FGD5Q6ZNL6 1462 aa13.76□□□□□ -0.21
VPS13B-206ENST00000496144 GAPVD1Q14C86 1478 aa13.73□□□□□ -0.21
VPS13B-206ENST00000496144 MAGI1Q96QZ7 1491 aaPredicted RBP13.72□□□□□ -0.21
VPS13B-206ENST00000496144 SNAPC4Q5SXM2 1469 aa13.71□□□□□ -0.21
VPS13B-206ENST00000496144 POLA1P09884 1462 aaPredicted RBP13.71□□□□□ -0.22
VPS13B-206ENST00000496144 RAD54L2Q9Y4B4 1467 aa13.7□□□□□ -0.22
VPS13B-206ENST00000496144 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
VPS13B-206ENST00000496144 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
VPS13B-206ENST00000496144 WDR97A6NE52 1622 aa13.68□□□□□ -0.22
VPS13B-206ENST00000496144 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
VPS13B-206ENST00000496144 ZNF608Q9ULD9 1512 aaPredicted RBP13.66□□□□□ -0.22
VPS13B-206ENST00000496144 SYNJ2O15056 1496 aa13.66□□□□□ -0.22
VPS13B-206ENST00000496144 EIF4G3O43432 1585 aaKnown RBP13.64□□□□□ -0.23
VPS13B-206ENST00000496144 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
VPS13B-206ENST00000496144 FHAD1B1AJZ9 1412 aa13.61□□□□□ -0.23
VPS13B-206ENST00000496144 ATP1B4Q9UN42 357 aaPredicted RBP13.59□□□□□ -0.23
VPS13B-206ENST00000496144 MYT1LQ9UL68 1186 aa13.56□□□□□ -0.24
VPS13B-206ENST00000496144 RANGAP1P46060 587 aaPredicted RBP13.56□□□□□ -0.24
VPS13B-206ENST00000496144 LOC105371045A0A1W2PR82 267 aa13.55□□□□□ -0.24
VPS13B-206ENST00000496144 JPH4Q96JJ6 628 aa13.55□□□□□ -0.24
VPS13B-206ENST00000496144 ARHGEF11O15085 1522 aa13.54□□□□□ -0.24
VPS13B-206ENST00000496144 CUX1P39880 1505 aa13.54□□□□□ -0.24
VPS13B-206ENST00000496144 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
VPS13B-206ENST00000496144 UBTFP17480 764 aaKnown RBP13.51□□□□□ -0.25
VPS13B-206ENST00000496144 RIMBP3CA6NJZ7 1639 aa13.49□□□□□ -0.25
VPS13B-206ENST00000496144 RIMBP3BA6NNM3 1639 aa13.49□□□□□ -0.25
VPS13B-206ENST00000496144 RIMBP3Q9UFD9 1639 aa13.49□□□□□ -0.25
VPS13B-206ENST00000496144 FAM69CQ0P6D2 419 aa13.48□□□□□ -0.25
VPS13B-206ENST00000496144 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
VPS13B-206ENST00000496144 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
VPS13B-206ENST00000496144 GRIN2AQ12879 1464 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms