RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
MSH5-217ENST00000494458 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
MSH5-217ENST00000494458 NISCHQ9Y2I1 1504 aa15.58■□□□□ 0.08
MSH5-217ENST00000494458 SENP3Q9H4L4 574 aaPredicted RBP14.76□□□□□ -0.05
MSH5-217ENST00000494458 PHF23Q9BUL5 403 aaPredicted RBP14.54□□□□□ -0.08
MSH5-217ENST00000494458 FOXD1Q16676 465 aa13.86□□□□□ -0.19
MSH5-217ENST00000494458 POTEDQ86YR6 584 aa13.69□□□□□ -0.22
MSH5-217ENST00000494458 CCDC180Q9P1Z9 1646 aa13.56□□□□□ -0.24
MSH5-217ENST00000494458 MSH5O43196 834 aa13.11□□□□□ -0.31
MSH5-217ENST00000494458 ZCCHC6Q5VYS8 1495 aaKnown RBP13.09□□□□□ -0.31
MSH5-217ENST00000494458 DCAF1Q9Y4B6 1507 aa12.98□□□□□ -0.33
MSH5-217ENST00000494458 MYO15BQ96JP2 1530 aa12.85□□□□□ -0.35
MSH5-217ENST00000494458 PIAS4Q8N2W9 510 aaPredicted RBP12.76□□□□□ -0.37
MSH5-217ENST00000494458 ABCC9O60706 1549 aa12.71□□□□□ -0.38
MSH5-217ENST00000494458 NACADO15069 1562 aa12.65□□□□□ -0.38
MSH5-217ENST00000494458 DCAF8L2P0C7V8 631 aa12.63□□□□□ -0.39
MSH5-217ENST00000494458 PPP6R1Q9UPN7 881 aa12.62□□□□□ -0.39
MSH5-217ENST00000494458 ADRA2BP18089 450 aa12.5□□□□□ -0.41
MSH5-217ENST00000494458 RB1CC1Q8TDY2 1594 aa12.49□□□□□ -0.41
MSH5-217ENST00000494458 SHROOM4Q9ULL8 1493 aa12.49□□□□□ -0.41
MSH5-217ENST00000494458 PLPPR3Q6T4P5 718 aa12.45□□□□□ -0.42
MSH5-217ENST00000494458 SCRIBQ14160 1630 aa12.33□□□□□ -0.43
MSH5-217ENST00000494458 UNC13AQ9UPW8 1703 aa12.19□□□□□ -0.46
MSH5-217ENST00000494458 BICRAQ9NZM4 1560 aa12.17□□□□□ -0.46
MSH5-217ENST00000494458 RSF1Q96T23 1441 aaPredicted RBP12.09□□□□□ -0.47
MSH5-217ENST00000494458 CECR2Q9BXF3 1484 aa12.07□□□□□ -0.48
MSH5-217ENST00000494458 SUPT5HO00267 1087 aaKnown RBP12.04□□□□□ -0.48
MSH5-217ENST00000494458 MROH2BQ7Z745 1585 aa12□□□□□ -0.49
MSH5-217ENST00000494458 BAZ1AQ9NRL2 1556 aaPredicted RBP12□□□□□ -0.49
MSH5-217ENST00000494458 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.491e-6■■□□□ 12.1
MSH5-217ENST00000494458 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
MSH5-217ENST00000494458 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
MSH5-217ENST00000494458 WIZO95785 1651 aa11.84□□□□□ -0.51
MSH5-217ENST00000494458 ATAD2BQ9ULI0 1458 aa11.78□□□□□ -0.52
MSH5-217ENST00000494458 TOP2AP11388 1531 aaKnown RBP11.77□□□□□ -0.52
MSH5-217ENST00000494458 SMARCA2P51531 1590 aa11.75□□□□□ -0.53
MSH5-217ENST00000494458 EIF4G1Q04637 1599 aaKnown RBP11.75□□□□□ -0.53
MSH5-217ENST00000494458 NCAPD3P42695 1498 aa11.73□□□□□ -0.53
MSH5-217ENST00000494458 CCDC88BA6NC98 1476 aa11.67□□□□□ -0.54
MSH5-217ENST00000494458 HMGXB3Q12766 1538 aa11.66□□□□□ -0.54
MSH5-217ENST00000494458 MAPK8IP2Q13387 824 aaPredicted RBP11.66□□□□□ -0.54
MSH5-217ENST00000494458 DMRT2Q9Y5R5 561 aa11.66□□□□□ -0.54
MSH5-217ENST00000494458 BAZ1BQ9UIG0 1483 aaKnown RBP11.63□□□□□ -0.55
MSH5-217ENST00000494458 CC2D2AQ9P2K1 1620 aa11.55□□□□□ -0.56
MSH5-217ENST00000494458 CACNB1Q02641 598 aaPredicted RBP11.53□□□□□ -0.56
MSH5-217ENST00000494458 CFTRP13569 1480 aa11.44□□□□□ -0.58
MSH5-217ENST00000494458 TRIM41Q8WV44 630 aa11.39□□□□□ -0.59
MSH5-217ENST00000494458 CADPSQ9ULU8 1353 aa11.39□□□□□ -0.59
MSH5-217ENST00000494458 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
MSH5-217ENST00000494458 WRNQ14191 1432 aaPredicted RBP eCLIP11.33□□□□□ -0.6
MSH5-217ENST00000494458 ABCC8Q09428 1581 aa11.33□□□□□ -0.6
MSH5-217ENST00000494458 DNAJC5BQ9UF47 199 aa11.3□□□□□ -0.6
MSH5-217ENST00000494458 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
MSH5-217ENST00000494458 SYNJ1O43426 1573 aa11.25□□□□□ -0.61
MSH5-217ENST00000494458 LAMC3Q9Y6N6 1575 aa11.25□□□□□ -0.61
MSH5-217ENST00000494458 TOP2BQ02880 1626 aa11.25□□□□□ -0.61
MSH5-217ENST00000494458 BIVM-ERCC5R4GMW8 1640 aa11.23□□□□□ -0.61
MSH5-217ENST00000494458 EEA1Q15075 1411 aa11.22□□□□□ -0.61
MSH5-217ENST00000494458 CUX1P39880 1505 aa11.21□□□□□ -0.61
MSH5-217ENST00000494458 FANCD2Q9BXW9 1451 aa11.19□□□□□ -0.62
MSH5-217ENST00000494458 RNF39Q9H2S5 420 aa11.19□□□□□ -0.62
MSH5-217ENST00000494458 NESP48681 1621 aa11.19□□□□□ -0.62
MSH5-217ENST00000494458 SOGA1O94964 1423 aa11.18□□□□□ -0.62
MSH5-217ENST00000494458 PDS5BQ9NTI5 1447 aa11.17□□□□□ -0.62
MSH5-217ENST00000494458 LOC105371045A0A1W2PR82 267 aa11.15□□□□□ -0.62
MSH5-217ENST00000494458 RUSC2Q8N2Y8 1516 aa11.13□□□□□ -0.63
MSH5-217ENST00000494458 CSRNP3Q8WYN3 585 aa11.12□□□□□ -0.63
MSH5-217ENST00000494458 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
MSH5-217ENST00000494458 CEP164Q9UPV0 1460 aa11.1□□□□□ -0.63
MSH5-217ENST00000494458 TOPBP1Q92547 1522 aa11.09□□□□□ -0.63
MSH5-217ENST00000494458 DCAF8L1A6NGE4 600 aa11.09□□□□□ -0.63
MSH5-217ENST00000494458 FAM9AQ8IZU1 332 aaPredicted RBP11.07□□□□□ -0.64
MSH5-217ENST00000494458 URB2Q14146 1524 aaKnown RBP11.07□□□□□ -0.64
MSH5-217ENST00000494458 FGD5Q6ZNL6 1462 aa11.06□□□□□ -0.64
MSH5-217ENST00000494458 HOXD11P31277 338 aaPredicted RBP11.05□□□□□ -0.64
MSH5-217ENST00000494458 KIF27Q86VH2 1401 aa11.04□□□□□ -0.64
MSH5-217ENST00000494458 POLA1P09884 1462 aaPredicted RBP11.04□□□□□ -0.64
MSH5-217ENST00000494458 PRXQ9BXM0 1461 aa11.04□□□□□ -0.64
MSH5-217ENST00000494458 ABCA10Q8WWZ4 1543 aa11.04□□□□□ -0.64
MSH5-217ENST00000494458 KIF21BO75037 1637 aa11.03□□□□□ -0.64
MSH5-217ENST00000494458 TNIKQ9UKE5 1360 aa11.03□□□□□ -0.64
MSH5-217ENST00000494458 IGF1RP08069 1367 aa11.02□□□□□ -0.65
MSH5-217ENST00000494458 KIF21AQ7Z4S6 1674 aa11.01□□□□□ -0.65
MSH5-217ENST00000494458 MRC2Q9UBG0 1479 aa11□□□□□ -0.65
MSH5-217ENST00000494458 GOLGA3Q08378 1498 aa11□□□□□ -0.65
MSH5-217ENST00000494458 ERICH3Q5RHP9 1530 aa10.99□□□□□ -0.65
MSH5-217ENST00000494458 C1QBPQ07021 282 aaKnown RBP10.98□□□□□ -0.65
MSH5-217ENST00000494458 WDR62O43379 1518 aa10.98□□□□□ -0.65
MSH5-217ENST00000494458 CUX2O14529 1486 aa10.97□□□□□ -0.65
MSH5-217ENST00000494458 RAD54L2Q9Y4B4 1467 aa10.96□□□□□ -0.65
MSH5-217ENST00000494458 WDR97A6NE52 1622 aa10.95□□□□□ -0.66
MSH5-217ENST00000494458 TARBP1Q13395 1621 aaKnown RBP10.95□□□□□ -0.66
MSH5-217ENST00000494458 RAPGEF2Q9Y4G8 1499 aa10.94□□□□□ -0.66
MSH5-217ENST00000494458 THOC2Q8NI27 1593 aaKnown RBP10.9□□□□□ -0.66
MSH5-217ENST00000494458 ABCA5Q8WWZ7 1642 aa10.9□□□□□ -0.66
MSH5-217ENST00000494458 CARMIL1Q5VZK9 1371 aa10.9□□□□□ -0.67
MSH5-217ENST00000494458 IFT140Q96RY7 1462 aa10.89□□□□□ -0.67
MSH5-217ENST00000494458 CEP162Q5TB80 1403 aa10.89□□□□□ -0.67
MSH5-217ENST00000494458 GAPVD1Q14C86 1478 aa10.87□□□□□ -0.67
MSH5-217ENST00000494458 UBTFP17480 764 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms