RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 NISCHQ9Y2I1 1504 aa20.46■□□□□ 0.87
NPHP3-209ENST00000493732 CCDC180Q9P1Z9 1646 aa17.6■□□□□ 0.41
NPHP3-209ENST00000493732 ZCCHC6Q5VYS8 1495 aaKnown RBP17.27■□□□□ 0.36
NPHP3-209ENST00000493732 SHROOM4Q9ULL8 1493 aa17■□□□□ 0.31
NPHP3-209ENST00000493732 DCAF1Q9Y4B6 1507 aa16.96■□□□□ 0.3
NPHP3-209ENST00000493732 DCAF8L2P0C7V8 631 aa16.75■□□□□ 0.27
NPHP3-209ENST00000493732 SUPT5HO00267 1087 aaKnown RBP16.66■□□□□ 0.26
NPHP3-209ENST00000493732 MYO15BQ96JP2 1530 aa16.58■□□□□ 0.24
NPHP3-209ENST00000493732 NACADO15069 1562 aa16.31■□□□□ 0.2
NPHP3-209ENST00000493732 ABCC9O60706 1549 aa16.26■□□□□ 0.19
NPHP3-209ENST00000493732 CHIC1Q5VXU3 224 aa16.23■□□□□ 0.19
NPHP3-209ENST00000493732 SCRIBQ14160 1630 aa16.21■□□□□ 0.19
NPHP3-209ENST00000493732 RSF1Q96T23 1441 aaPredicted RBP16.06■□□□□ 0.16
NPHP3-209ENST00000493732 RB1CC1Q8TDY2 1594 aa16.04■□□□□ 0.16
NPHP3-209ENST00000493732 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
NPHP3-209ENST00000493732 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
NPHP3-209ENST00000493732 BAZ1AQ9NRL2 1556 aaPredicted RBP15.78■□□□□ 0.12
NPHP3-209ENST00000493732 TRIM41Q8WV44 630 aa15.68■□□□□ 0.1
NPHP3-209ENST00000493732 WIZO95785 1651 aa15.67■□□□□ 0.1
NPHP3-209ENST00000493732 UNC13AQ9UPW8 1703 aa15.62■□□□□ 0.09
NPHP3-209ENST00000493732 SMARCA4P51532 1647 aa15.6■□□□□ 0.09
NPHP3-209ENST00000493732 LOC105371045A0A1W2PR82 267 aa15.58■□□□□ 0.09
NPHP3-209ENST00000493732 TOP2AP11388 1531 aaKnown RBP15.57■□□□□ 0.08
NPHP3-209ENST00000493732 HRCP23327 699 aa15.47■□□□□ 0.07
NPHP3-209ENST00000493732 PCGF6Q9BYE7 350 aa15.47■□□□□ 0.07
NPHP3-209ENST00000493732 BICRAQ9NZM4 1560 aa15.46■□□□□ 0.07
NPHP3-209ENST00000493732 EIF4G1Q04637 1599 aaKnown RBP15.46■□□□□ 0.07
NPHP3-209ENST00000493732 CCDC88BA6NC98 1476 aa15.41■□□□□ 0.06
NPHP3-209ENST00000493732 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
NPHP3-209ENST00000493732 PEG3Q9GZU2 1588 aa15.41■□□□□ 0.06
NPHP3-209ENST00000493732 TRIM26Q12899 539 aaPredicted RBP15.41■□□□□ 0.06
NPHP3-209ENST00000493732 PABPN1Q86U42 306 aaKnown RBP eCLIP15.34■□□□□ 0.05
NPHP3-209ENST00000493732 FAM9AQ8IZU1 332 aaPredicted RBP15.34■□□□□ 0.05
NPHP3-209ENST00000493732 EEA1Q15075 1411 aa15.25■□□□□ 0.03
NPHP3-209ENST00000493732 ATAD2BQ9ULI0 1458 aa15.23■□□□□ 0.03
NPHP3-209ENST00000493732 ABCC8Q09428 1581 aa15.21■□□□□ 0.02
NPHP3-209ENST00000493732 BAZ1BQ9UIG0 1483 aaKnown RBP15.19■□□□□ 0.02
NPHP3-209ENST00000493732 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
NPHP3-209ENST00000493732 WRNQ14191 1432 aaPredicted RBP eCLIP15.14■□□□□ 0.01
NPHP3-209ENST00000493732 CSRNP3Q8WYN3 585 aa15.08■□□□□ 0
NPHP3-209ENST00000493732 TNIKQ9UKE5 1360 aa15.08■□□□□ 0
NPHP3-209ENST00000493732 EHMT2Q96KQ7 1210 aa15.06■□□□□ 0
NPHP3-209ENST00000493732 SOGA1O94964 1423 aa15.06■□□□□ 0
NPHP3-209ENST00000493732 HMGXB3Q12766 1538 aa15.06■□□□□ 0
NPHP3-209ENST00000493732 NCAPD3P42695 1498 aa15.04■□□□□ -0
NPHP3-209ENST00000493732 GOLGA3Q08378 1498 aa15.02□□□□□ -0.01
NPHP3-209ENST00000493732 CEP162Q5TB80 1403 aa15□□□□□ -0.01
NPHP3-209ENST00000493732 SYNJ1O43426 1573 aa14.98□□□□□ -0.01
NPHP3-209ENST00000493732 CEP164Q9UPV0 1460 aa14.97□□□□□ -0.01
NPHP3-209ENST00000493732 KIF21BO75037 1637 aa14.95□□□□□ -0.02
NPHP3-209ENST00000493732 UBTFP17480 764 aaKnown RBP14.94□□□□□ -0.02
NPHP3-209ENST00000493732 RUSC2Q8N2Y8 1516 aa14.93□□□□□ -0.02
NPHP3-209ENST00000493732 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
NPHP3-209ENST00000493732 PPARGC1BQ86YN6 1023 aaKnown RBP14.92□□□□□ -0.02
NPHP3-209ENST00000493732 BIVM-ERCC5R4GMW8 1640 aa14.89□□□□□ -0.03
NPHP3-209ENST00000493732 CFTRP13569 1480 aa14.84□□□□□ -0.03
NPHP3-209ENST00000493732 CLIP1P30622 1438 aa14.78□□□□□ -0.04
NPHP3-209ENST00000493732 ERICH3Q5RHP9 1530 aa14.78□□□□□ -0.04
NPHP3-209ENST00000493732 PRDM2Q13029 1718 aa14.76□□□□□ -0.05
NPHP3-209ENST00000493732 KIF27Q86VH2 1401 aa14.73□□□□□ -0.05
NPHP3-209ENST00000493732 VPS8Q8N3P4 1428 aa14.73□□□□□ -0.05
NPHP3-209ENST00000493732 RAPGEF2Q9Y4G8 1499 aa14.73□□□□□ -0.05
NPHP3-209ENST00000493732 CUX1P39880 1505 aa14.73□□□□□ -0.05
NPHP3-209ENST00000493732 PRXQ9BXM0 1461 aa14.72□□□□□ -0.05
NPHP3-209ENST00000493732 CCER1Q8TC90 406 aaPredicted RBP14.7□□□□□ -0.06
NPHP3-209ENST00000493732 APLP2Q06481 763 aa14.7□□□□□ -0.06
NPHP3-209ENST00000493732 CADPSQ9ULU8 1353 aa14.7□□□□□ -0.06
NPHP3-209ENST00000493732 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
NPHP3-209ENST00000493732 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.62□□□□□ -0.07
NPHP3-209ENST00000493732 TTBK1Q5TCY1 1321 aaPredicted RBP14.57□□□□□ -0.08
NPHP3-209ENST00000493732 CUX2O14529 1486 aa14.53□□□□□ -0.08
NPHP3-209ENST00000493732 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
NPHP3-209ENST00000493732 FANCD2Q9BXW9 1451 aa14.51□□□□□ -0.09
NPHP3-209ENST00000493732 IGF1RP08069 1367 aa14.51□□□□□ -0.09
NPHP3-209ENST00000493732 FGD5Q6ZNL6 1462 aa14.51□□□□□ -0.09
NPHP3-209ENST00000493732 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
NPHP3-209ENST00000493732 RANGAP1P46060 587 aaPredicted RBP14.47□□□□□ -0.09
NPHP3-209ENST00000493732 CARMIL1Q5VZK9 1371 aa14.46□□□□□ -0.09
NPHP3-209ENST00000493732 LAMC3Q9Y6N6 1575 aa14.44□□□□□ -0.1
NPHP3-209ENST00000493732 ARHGAP35Q9NRY4 1499 aa14.44□□□□□ -0.1
NPHP3-209ENST00000493732 MAP3K1Q13233 1512 aa14.42□□□□□ -0.1
NPHP3-209ENST00000493732 ABCA10Q8WWZ4 1543 aa14.42□□□□□ -0.1
NPHP3-209ENST00000493732 HNRNPUL2Q1KMD3 747 aaKnown RBP14.41□□□□□ -0.1
NPHP3-209ENST00000493732 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
NPHP3-209ENST00000493732 AEBP2Q6ZN18 517 aaPredicted RBP14.4□□□□□ -0.1
NPHP3-209ENST00000493732 CLSPNQ9HAW4 1339 aa14.4□□□□□ -0.1
NPHP3-209ENST00000493732 RRBP1Q9P2E9 1410 aaKnown RBP14.38□□□□□ -0.11
NPHP3-209ENST00000493732 FHAD1B1AJZ9 1412 aa14.37□□□□□ -0.11
NPHP3-209ENST00000493732 POLA1P09884 1462 aaPredicted RBP14.36□□□□□ -0.11
NPHP3-209ENST00000493732 CUL7Q14999 1698 aa14.36□□□□□ -0.11
NPHP3-209ENST00000493732 PDS5BQ9NTI5 1447 aa14.35□□□□□ -0.11
NPHP3-209ENST00000493732 KANK4Q5T7N3 995 aaPredicted RBP14.33□□□□□ -0.12
NPHP3-209ENST00000493732 EFCAB5A4FU69 1503 aa14.32□□□□□ -0.12
NPHP3-209ENST00000493732 DIEXFQ68CQ4 756 aaKnown RBP14.31□□□□□ -0.12
NPHP3-209ENST00000493732 NESP48681 1621 aa14.31□□□□□ -0.12
NPHP3-209ENST00000493732 ZNF316A6NFI3 1004 aaPredicted RBP14.31□□□□□ -0.12
NPHP3-209ENST00000493732 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
NPHP3-209ENST00000493732 TIAM1Q13009 1591 aa14.3□□□□□ -0.12
NPHP3-209ENST00000493732 CCNB3Q8WWL7 1395 aa14.3□□□□□ -0.12
NPHP3-209ENST00000493732 WDR97A6NE52 1622 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms