RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 NISCHQ9Y2I1 1504 aa14.02□□□□□ -0.16
VPS13B-205ENST00000493587 CCDC180Q9P1Z9 1646 aa12.39□□□□□ -0.43
VPS13B-205ENST00000493587 PELP1Q8IZL8 1130 aaKnown RBP12.16□□□□□ -0.46
VPS13B-205ENST00000493587 ZCCHC6Q5VYS8 1495 aaKnown RBP11.94□□□□□ -0.5
VPS13B-205ENST00000493587 MYT1Q01538 1121 aa11.91□□□□□ -0.5
VPS13B-205ENST00000493587 DCAF1Q9Y4B6 1507 aa11.82□□□□□ -0.52
VPS13B-205ENST00000493587 MYO15BQ96JP2 1530 aa11.6□□□□□ -0.55
VPS13B-205ENST00000493587 HRCP23327 699 aa11.44□□□□□ -0.58
VPS13B-205ENST00000493587 UNC13AQ9UPW8 1703 aa11.31□□□□□ -0.6
VPS13B-205ENST00000493587 TTBK1Q5TCY1 1321 aaPredicted RBP11.29□□□□□ -0.6
VPS13B-205ENST00000493587 PPARGC1BQ86YN6 1023 aaKnown RBP11.29□□□□□ -0.6
VPS13B-205ENST00000493587 ABCC9O60706 1549 aa11.28□□□□□ -0.6
VPS13B-205ENST00000493587 NACADO15069 1562 aa11.22□□□□□ -0.61
VPS13B-205ENST00000493587 SCAF1Q9H7N4 1312 aaKnown RBP11.21□□□□□ -0.61
VPS13B-205ENST00000493587 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
VPS13B-205ENST00000493587 PCGF6Q9BYE7 350 aa11.07□□□□□ -0.64
VPS13B-205ENST00000493587 BCL11AQ9H165 835 aa11.06□□□□□ -0.64
VPS13B-205ENST00000493587 EIF4G1Q04637 1599 aaKnown RBP11.04□□□□□ -0.64
VPS13B-205ENST00000493587 SCRIBQ14160 1630 aa11.04□□□□□ -0.64
VPS13B-205ENST00000493587 SHROOM4Q9ULL8 1493 aa10.98□□□□□ -0.65
VPS13B-205ENST00000493587 RB1CC1Q8TDY2 1594 aa10.97□□□□□ -0.65
VPS13B-205ENST00000493587 BICRAQ9NZM4 1560 aa10.96□□□□□ -0.66
VPS13B-205ENST00000493587 ERICH6Q7L0X2 663 aa10.96□□□□□ -0.66
VPS13B-205ENST00000493587 CENPBP07199 599 aaPredicted RBP10.9□□□□□ -0.66
VPS13B-205ENST00000493587 FAM9AQ8IZU1 332 aaPredicted RBP10.89□□□□□ -0.67
VPS13B-205ENST00000493587 BAZ1AQ9NRL2 1556 aaPredicted RBP10.88□□□□□ -0.67
VPS13B-205ENST00000493587 PEG3Q9GZU2 1588 aa10.87□□□□□ -0.67
VPS13B-205ENST00000493587 RSF1Q96T23 1441 aaPredicted RBP10.87□□□□□ -0.67
VPS13B-205ENST00000493587 WIZO95785 1651 aa10.83□□□□□ -0.68
VPS13B-205ENST00000493587 MROH2BQ7Z745 1585 aa10.82□□□□□ -0.68
VPS13B-205ENST00000493587 GTF3C3Q9Y5Q9 886 aa10.82□□□□□ -0.68
VPS13B-205ENST00000493587 DCAF8L2P0C7V8 631 aa10.82□□□□□ -0.68
VPS13B-205ENST00000493587 SMARCA4P51532 1647 aa10.8□□□□□ -0.68
VPS13B-205ENST00000493587 CECR2Q9BXF3 1484 aa10.78□□□□□ -0.68
VPS13B-205ENST00000493587 ACIN1Q9UKV3 1341 aaKnown RBP10.78□□□□□ -0.68
VPS13B-205ENST00000493587 NEUROD1Q13562 356 aa10.72□□□□□ -0.69
VPS13B-205ENST00000493587 TOP2AP11388 1531 aaKnown RBP10.69□□□□□ -0.7
VPS13B-205ENST00000493587 SMARCA2P51531 1590 aa10.66□□□□□ -0.7
VPS13B-205ENST00000493587 APLP2Q06481 763 aa10.64□□□□□ -0.71
VPS13B-205ENST00000493587 ZEB1P37275 1124 aaPredicted RBP10.61□□□□□ -0.71
VPS13B-205ENST00000493587 PRDM2Q13029 1718 aa10.59□□□□□ -0.71
VPS13B-205ENST00000493587 CHIC1Q5VXU3 224 aa10.57□□□□□ -0.72
VPS13B-205ENST00000493587 ANP32EQ9BTT0 268 aa10.57□□□□□ -0.72
VPS13B-205ENST00000493587 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
VPS13B-205ENST00000493587 SLC24A1O60721 1099 aa10.51□□□□□ -0.73
VPS13B-205ENST00000493587 CSRNP3Q8WYN3 585 aa10.49□□□□□ -0.73
VPS13B-205ENST00000493587 CCDC88BA6NC98 1476 aa10.46□□□□□ -0.73
VPS13B-205ENST00000493587 HMGXB3Q12766 1538 aa10.45□□□□□ -0.74
VPS13B-205ENST00000493587 YTHDC1Q96MU7 727 aaKnown RBP10.43□□□□□ -0.74
VPS13B-205ENST00000493587 BIVM-ERCC5R4GMW8 1640 aa10.42□□□□□ -0.74
VPS13B-205ENST00000493587 ATAD2BQ9ULI0 1458 aa10.39□□□□□ -0.75
VPS13B-205ENST00000493587 TRIM26Q12899 539 aaPredicted RBP10.39□□□□□ -0.75
VPS13B-205ENST00000493587 SYNJ1O43426 1573 aa10.33□□□□□ -0.76
VPS13B-205ENST00000493587 EIF5BO60841 1220 aaKnown RBP10.32□□□□□ -0.76
VPS13B-205ENST00000493587 ANO8Q9HCE9 1232 aaPredicted RBP10.32□□□□□ -0.76
VPS13B-205ENST00000493587 ABCC8Q09428 1581 aa10.32□□□□□ -0.76
VPS13B-205ENST00000493587 DIEXFQ68CQ4 756 aaKnown RBP10.31□□□□□ -0.76
VPS13B-205ENST00000493587 NCAPD3P42695 1498 aa10.3□□□□□ -0.76
VPS13B-205ENST00000493587 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
VPS13B-205ENST00000493587 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS13B-205ENST00000493587 KIF21BO75037 1637 aa10.25□□□□□ -0.77
VPS13B-205ENST00000493587 WDR97A6NE52 1622 aa10.21□□□□□ -0.78
VPS13B-205ENST00000493587 CCDC136Q96JN2 1154 aa10.19□□□□□ -0.78
VPS13B-205ENST00000493587 BAZ1BQ9UIG0 1483 aaKnown RBP10.18□□□□□ -0.78
VPS13B-205ENST00000493587 TSHZ2Q9NRE2 1034 aa10.16□□□□□ -0.78
VPS13B-205ENST00000493587 CFTRP13569 1480 aa10.15□□□□□ -0.78
VPS13B-205ENST00000493587 CC2D2AQ9P2K1 1620 aa10.14□□□□□ -0.79
VPS13B-205ENST00000493587 CUX1P39880 1505 aa10.13□□□□□ -0.79
VPS13B-205ENST00000493587 WRNQ14191 1432 aaPredicted RBP eCLIP10.12□□□□□ -0.79
VPS13B-205ENST00000493587 RUSC2Q8N2Y8 1516 aa10.11□□□□□ -0.79
VPS13B-205ENST00000493587 PLEKHG5O94827 1062 aa10.1□□□□□ -0.79
VPS13B-205ENST00000493587 DAXXQ9UER7 740 aaPredicted RBP10.1□□□□□ -0.79
VPS13B-205ENST00000493587 SALL2Q9Y467 1007 aaPredicted RBP10.1□□□□□ -0.79
VPS13B-205ENST00000493587 UBE2Q2Q8WVN8 375 aa10.1□□□□□ -0.79
VPS13B-205ENST00000493587 LOC105371045A0A1W2PR82 267 aa10.09□□□□□ -0.79
VPS13B-205ENST00000493587 CCER1Q8TC90 406 aaPredicted RBP10.09□□□□□ -0.79
VPS13B-205ENST00000493587 EEA1Q15075 1411 aa10.08□□□□□ -0.8
VPS13B-205ENST00000493587 ERICH3Q5RHP9 1530 aa10.07□□□□□ -0.8
VPS13B-205ENST00000493587 SOGA1O94964 1423 aa10.06□□□□□ -0.8
VPS13B-205ENST00000493587 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.05□□□□□ -0.8
VPS13B-205ENST00000493587 PODXL2Q9NZ53 605 aa10.03□□□□□ -0.8
VPS13B-205ENST00000493587 SUPT16HQ9Y5B9 1047 aaKnown RBP10.03□□□□□ -0.8
VPS13B-205ENST00000493587 PKNOX2Q96KN3 472 aa10.02□□□□□ -0.8
VPS13B-205ENST00000493587 PRXQ9BXM0 1461 aa10.01□□□□□ -0.81
VPS13B-205ENST00000493587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.01□□□□□ -0.81
VPS13B-205ENST00000493587 BCANQ96GW7 911 aa10□□□□□ -0.81
VPS13B-205ENST00000493587 DEKP35659 375 aaKnown RBP9.99□□□□□ -0.81
VPS13B-205ENST00000493587 ABCA5Q8WWZ7 1642 aa9.97□□□□□ -0.81
VPS13B-205ENST00000493587 TNIKQ9UKE5 1360 aa9.97□□□□□ -0.81
VPS13B-205ENST00000493587 KIF21AQ7Z4S6 1674 aa9.96□□□□□ -0.81
VPS13B-205ENST00000493587 RTN4Q9NQC3 1192 aaKnown RBP9.96□□□□□ -0.82
VPS13B-205ENST00000493587 LAMC3Q9Y6N6 1575 aa9.96□□□□□ -0.82
VPS13B-205ENST00000493587 LRRIQ1Q96JM4 1722 aa9.95□□□□□ -0.82
VPS13B-205ENST00000493587 DNMBPQ6XZF7 1577 aa9.94□□□□□ -0.82
VPS13B-205ENST00000493587 CTTNBP2Q8WZ74 1663 aa9.93□□□□□ -0.82
VPS13B-205ENST00000493587 MYT1LQ9UL68 1186 aa9.92□□□□□ -0.82
VPS13B-205ENST00000493587 GOLGA3Q08378 1498 aa9.92□□□□□ -0.82
VPS13B-205ENST00000493587 TARBP1Q13395 1621 aaKnown RBP9.92□□□□□ -0.82
VPS13B-205ENST00000493587 MIER1Q8N108 512 aa9.92□□□□□ -0.82
VPS13B-205ENST00000493587 TRIM41Q8WV44 630 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms