RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.38
USP4-214ENST00000491791 ABCC9O60706 1549 aa20.83■□□□□ 0.93
USP4-214ENST00000491791 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
USP4-214ENST00000491791 ZCCHC6Q5VYS8 1495 aaKnown RBP19.94■□□□□ 0.78
USP4-214ENST00000491791 RB1CC1Q8TDY2 1594 aa19.81■□□□□ 0.76
USP4-214ENST00000491791 DCAF1Q9Y4B6 1507 aa19.69■□□□□ 0.74
USP4-214ENST00000491791 NACADO15069 1562 aa19.65■□□□□ 0.74
USP4-214ENST00000491791 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
USP4-214ENST00000491791 DCAF8L2P0C7V8 631 aa19.56■□□□□ 0.72
USP4-214ENST00000491791 PABPN1Q86U42 306 aaKnown RBP eCLIP19.39■□□□□ 0.69
USP4-214ENST00000491791 MYO15BQ96JP2 1530 aa19.34■□□□□ 0.69
USP4-214ENST00000491791 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
USP4-214ENST00000491791 SHROOM4Q9ULL8 1493 aa19.24■□□□□ 0.67
USP4-214ENST00000491791 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
USP4-214ENST00000491791 SCRIBQ14160 1630 aa18.85■□□□□ 0.61
USP4-214ENST00000491791 CECR2Q9BXF3 1484 aa18.81■□□□□ 0.6
USP4-214ENST00000491791 CC2D2AQ9P2K1 1620 aa18.8■□□□□ 0.6
USP4-214ENST00000491791 EIF4G1Q04637 1599 aaKnown RBP18.74■□□□□ 0.59
USP4-214ENST00000491791 SUPT5HO00267 1087 aaKnown RBP18.72■□□□□ 0.59
USP4-214ENST00000491791 RSF1Q96T23 1441 aaPredicted RBP18.46■□□□□ 0.55
USP4-214ENST00000491791 CHIC1Q5VXU3 224 aa18.28■□□□□ 0.52
USP4-214ENST00000491791 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
USP4-214ENST00000491791 BAZ1AQ9NRL2 1556 aaPredicted RBP18.21■□□□□ 0.51
USP4-214ENST00000491791 DNAJC5Q9H3Z4 198 aa18.16■□□□□ 0.5
USP4-214ENST00000491791 NCAPD3P42695 1498 aa18.12■□□□□ 0.49
USP4-214ENST00000491791 SMARCA4P51532 1647 aa18.07■□□□□ 0.48
USP4-214ENST00000491791 ERCC6Q03468 1493 aa18.07■□□□□ 0.48
USP4-214ENST00000491791 CUX2O14529 1486 aa18.05■□□□□ 0.48
USP4-214ENST00000491791 WIZO95785 1651 aa18.05■□□□□ 0.48
USP4-214ENST00000491791 ATAD2BQ9ULI0 1458 aa18.04■□□□□ 0.48
USP4-214ENST00000491791 SMARCA2P51531 1590 aa18.02■□□□□ 0.48
USP4-214ENST00000491791 HMGXB3Q12766 1538 aa17.98■□□□□ 0.47
USP4-214ENST00000491791 TOP2AP11388 1531 aaKnown RBP17.96■□□□□ 0.47
USP4-214ENST00000491791 PEG3Q9GZU2 1588 aa17.95■□□□□ 0.46
USP4-214ENST00000491791 BAZ1BQ9UIG0 1483 aaKnown RBP17.89■□□□□ 0.45
USP4-214ENST00000491791 NESP48681 1621 aa17.83■□□□□ 0.44
USP4-214ENST00000491791 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
USP4-214ENST00000491791 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
USP4-214ENST00000491791 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
USP4-214ENST00000491791 TRIM41Q8WV44 630 aa17.68■□□□□ 0.42
USP4-214ENST00000491791 THOC2Q8NI27 1593 aaKnown RBP17.67■□□□□ 0.42
USP4-214ENST00000491791 KIF21AQ7Z4S6 1674 aa17.59■□□□□ 0.41
USP4-214ENST00000491791 CADPSQ9ULU8 1353 aa17.59■□□□□ 0.41
USP4-214ENST00000491791 MRC2Q9UBG0 1479 aa17.5■□□□□ 0.39
USP4-214ENST00000491791 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
USP4-214ENST00000491791 WDR62O43379 1518 aa17.44■□□□□ 0.38
USP4-214ENST00000491791 CEP164Q9UPV0 1460 aa17.42■□□□□ 0.38
USP4-214ENST00000491791 ABCC8Q09428 1581 aa17.39■□□□□ 0.37
USP4-214ENST00000491791 EEA1Q15075 1411 aa17.38■□□□□ 0.37
USP4-214ENST00000491791 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
USP4-214ENST00000491791 CFTRP13569 1480 aa17.34■□□□□ 0.37
USP4-214ENST00000491791 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
USP4-214ENST00000491791 OSCARQ8IYS5 282 aa17.24■□□□□ 0.35
USP4-214ENST00000491791 SYNJ1O43426 1573 aa17.23■□□□□ 0.35
USP4-214ENST00000491791 FAM9AQ8IZU1 332 aaPredicted RBP17.21■□□□□ 0.35
USP4-214ENST00000491791 URB2Q14146 1524 aaKnown RBP17.2■□□□□ 0.34
USP4-214ENST00000491791 TOP2BQ02880 1626 aa17.19■□□□□ 0.34
USP4-214ENST00000491791 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
USP4-214ENST00000491791 SOGA1O94964 1423 aa17.18■□□□□ 0.34
USP4-214ENST00000491791 PRDM2Q13029 1718 aa17.15■□□□□ 0.34
USP4-214ENST00000491791 CSRNP3Q8WYN3 585 aa17.13■□□□□ 0.33
USP4-214ENST00000491791 TNIKQ9UKE5 1360 aa17.12■□□□□ 0.33
USP4-214ENST00000491791 TRIM26Q12899 539 aaPredicted RBP17.09■□□□□ 0.33
USP4-214ENST00000491791 KIF21BO75037 1637 aa17.09■□□□□ 0.33
USP4-214ENST00000491791 RUSC2Q8N2Y8 1516 aa17.08■□□□□ 0.32
USP4-214ENST00000491791 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
USP4-214ENST00000491791 GOLGA3Q08378 1498 aa17.05■□□□□ 0.32
USP4-214ENST00000491791 PCGF6Q9BYE7 350 aa17.03■□□□□ 0.32
USP4-214ENST00000491791 CUX1P39880 1505 aa17.02■□□□□ 0.32
USP4-214ENST00000491791 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
USP4-214ENST00000491791 ZNF608Q9ULD9 1512 aaPredicted RBP17.01■□□□□ 0.31
USP4-214ENST00000491791 CEP162Q5TB80 1403 aa16.97■□□□□ 0.31
USP4-214ENST00000491791 HRCP23327 699 aa16.97■□□□□ 0.31
USP4-214ENST00000491791 DNMBPQ6XZF7 1577 aa16.95■□□□□ 0.3
USP4-214ENST00000491791 RIMBP3CA6NJZ7 1639 aa16.94■□□□□ 0.3
USP4-214ENST00000491791 RIMBP3BA6NNM3 1639 aa16.94■□□□□ 0.3
USP4-214ENST00000491791 RIMBP3Q9UFD9 1639 aa16.94■□□□□ 0.3
USP4-214ENST00000491791 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
USP4-214ENST00000491791 EIF4G3O43432 1585 aaKnown RBP16.92■□□□□ 0.3
USP4-214ENST00000491791 PRXQ9BXM0 1461 aa16.91■□□□□ 0.3
USP4-214ENST00000491791 ARHGEF11O15085 1522 aa16.9■□□□□ 0.3
USP4-214ENST00000491791 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
USP4-214ENST00000491791 AQRO60306 1485 aaKnown RBP eCLIP16.86■□□□□ 0.294e-6■■■□□ 16
USP4-214ENST00000491791 TARBP1Q13395 1621 aaKnown RBP16.85■□□□□ 0.29
USP4-214ENST00000491791 FBLN2P98095 1184 aa16.84■□□□□ 0.29
USP4-214ENST00000491791 POLA1P09884 1462 aaPredicted RBP16.83■□□□□ 0.28
USP4-214ENST00000491791 UBTFP17480 764 aaKnown RBP16.83■□□□□ 0.28
USP4-214ENST00000491791 RAPGEF2Q9Y4G8 1499 aa16.82■□□□□ 0.28
USP4-214ENST00000491791 CYB5RLQ6IPT4 315 aa16.82■□□□□ 0.28
USP4-214ENST00000491791 EHMT2Q96KQ7 1210 aa16.81■□□□□ 0.28
USP4-214ENST00000491791 CHD1O14646 1710 aa16.79■□□□□ 0.28
USP4-214ENST00000491791 RAD54L2Q9Y4B4 1467 aa16.76■□□□□ 0.27
USP4-214ENST00000491791 CLIP1P30622 1438 aa16.76■□□□□ 0.27
USP4-214ENST00000491791 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
USP4-214ENST00000491791 FGD5Q6ZNL6 1462 aa16.74■□□□□ 0.27
USP4-214ENST00000491791 WDR97A6NE52 1622 aa16.74■□□□□ 0.27
USP4-214ENST00000491791 VPS8Q8N3P4 1428 aa16.71■□□□□ 0.27
USP4-214ENST00000491791 TRHP20396 242 aaPredicted RBP16.71■□□□□ 0.27
USP4-214ENST00000491791 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
USP4-214ENST00000491791 IGF1RP08069 1367 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms