RNA–Protein interactions for RNA: ENST00000489419.1

CSMD2-209, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 2

Gene CSMD2, Length 2,431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-209ENST00000489419 NISCHQ9Y2I1 1504 aa19.02■□□□□ 0.64
CSMD2-209ENST00000489419 CCDC180Q9P1Z9 1646 aa16.39■□□□□ 0.21
CSMD2-209ENST00000489419 ZCCHC6Q5VYS8 1495 aaKnown RBP16.05■□□□□ 0.16
CSMD2-209ENST00000489419 DCAF1Q9Y4B6 1507 aa15.77■□□□□ 0.11
CSMD2-209ENST00000489419 SHROOM4Q9ULL8 1493 aa15.72■□□□□ 0.11
CSMD2-209ENST00000489419 DCAF8L2P0C7V8 631 aa15.56■□□□□ 0.08
CSMD2-209ENST00000489419 MYO15BQ96JP2 1530 aa15.45■□□□□ 0.06
CSMD2-209ENST00000489419 SUPT5HO00267 1087 aaKnown RBP15.35■□□□□ 0.05
CSMD2-209ENST00000489419 NACADO15069 1562 aa15.2■□□□□ 0.02
CSMD2-209ENST00000489419 ABCC9O60706 1549 aa15.13■□□□□ 0.01
CSMD2-209ENST00000489419 SCRIBQ14160 1630 aa15.08■□□□□ 0
CSMD2-209ENST00000489419 RB1CC1Q8TDY2 1594 aa14.96□□□□□ -0.01
CSMD2-209ENST00000489419 CHIC1Q5VXU3 224 aa14.94□□□□□ -0.02
CSMD2-209ENST00000489419 RSF1Q96T23 1441 aaPredicted RBP14.91□□□□□ -0.02
CSMD2-209ENST00000489419 CECR2Q9BXF3 1484 aa14.72□□□□□ -0.05
CSMD2-209ENST00000489419 MROH2BQ7Z745 1585 aa14.68□□□□□ -0.06
CSMD2-209ENST00000489419 DNAJC5Q9H3Z4 198 aa14.66□□□□□ -0.06
CSMD2-209ENST00000489419 BAZ1AQ9NRL2 1556 aaPredicted RBP14.65□□□□□ -0.06
CSMD2-209ENST00000489419 PELP1Q8IZL8 1130 aaKnown RBP14.62□□□□□ -0.07
CSMD2-209ENST00000489419 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
CSMD2-209ENST00000489419 WIZO95785 1651 aa14.56□□□□□ -0.08
CSMD2-209ENST00000489419 AEBP2Q6ZN18 517 aaPredicted RBP14.53□□□□□ -0.08
CSMD2-209ENST00000489419 SMARCA4P51532 1647 aa14.52□□□□□ -0.09
CSMD2-209ENST00000489419 BICRAQ9NZM4 1560 aa14.49□□□□□ -0.09
CSMD2-209ENST00000489419 MYT1Q01538 1121 aa14.45□□□□□ -0.1
CSMD2-209ENST00000489419 TOP2AP11388 1531 aaKnown RBP14.45□□□□□ -0.1
CSMD2-209ENST00000489419 TRIM41Q8WV44 630 aa14.45□□□□□ -0.1
CSMD2-209ENST00000489419 PEG3Q9GZU2 1588 aa14.36□□□□□ -0.11
CSMD2-209ENST00000489419 LOC105371045A0A1W2PR82 267 aa14.35□□□□□ -0.11
CSMD2-209ENST00000489419 PABPN1Q86U42 306 aaKnown RBP eCLIP14.35□□□□□ -0.11
CSMD2-209ENST00000489419 EIF4G1Q04637 1599 aaKnown RBP14.35□□□□□ -0.11
CSMD2-209ENST00000489419 CCDC88BA6NC98 1476 aa14.33□□□□□ -0.12
CSMD2-209ENST00000489419 SMARCA2P51531 1590 aa14.32□□□□□ -0.12
CSMD2-209ENST00000489419 ATAD2BQ9ULI0 1458 aa14.21□□□□□ -0.14
CSMD2-209ENST00000489419 FAM9AQ8IZU1 332 aaPredicted RBP14.14□□□□□ -0.15
CSMD2-209ENST00000489419 BAZ1BQ9UIG0 1483 aaKnown RBP14.13□□□□□ -0.15
CSMD2-209ENST00000489419 PCGF6Q9BYE7 350 aa14.11□□□□□ -0.15
CSMD2-209ENST00000489419 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
CSMD2-209ENST00000489419 TRIM26Q12899 539 aaPredicted RBP14.07□□□□□ -0.16
CSMD2-209ENST00000489419 EEA1Q15075 1411 aa14.07□□□□□ -0.16
CSMD2-209ENST00000489419 HRCP23327 699 aa14.05□□□□□ -0.16
CSMD2-209ENST00000489419 NCAPD3P42695 1498 aa14.05□□□□□ -0.16
CSMD2-209ENST00000489419 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
CSMD2-209ENST00000489419 WRNQ14191 1432 aaPredicted RBP eCLIP14.01□□□□□ -0.17
CSMD2-209ENST00000489419 TTBK1Q5TCY1 1321 aaPredicted RBP14□□□□□ -0.17
CSMD2-209ENST00000489419 SOGA1O94964 1423 aa13.94□□□□□ -0.18
CSMD2-209ENST00000489419 CSRNP3Q8WYN3 585 aa13.94□□□□□ -0.18
CSMD2-209ENST00000489419 TNIKQ9UKE5 1360 aa13.9□□□□□ -0.18
CSMD2-209ENST00000489419 SYNJ1O43426 1573 aa13.9□□□□□ -0.18
CSMD2-209ENST00000489419 EHMT2Q96KQ7 1210 aa13.88□□□□□ -0.19
CSMD2-209ENST00000489419 RUSC2Q8N2Y8 1516 aa13.85□□□□□ -0.19
CSMD2-209ENST00000489419 TOP2BQ02880 1626 aa13.84□□□□□ -0.19
CSMD2-209ENST00000489419 GOLGA3Q08378 1498 aa13.84□□□□□ -0.19
CSMD2-209ENST00000489419 CFTRP13569 1480 aa13.83□□□□□ -0.2
CSMD2-209ENST00000489419 BIVM-ERCC5R4GMW8 1640 aa13.82□□□□□ -0.2
CSMD2-209ENST00000489419 CEP162Q5TB80 1403 aa13.82□□□□□ -0.2
CSMD2-209ENST00000489419 CEP164Q9UPV0 1460 aa13.82□□□□□ -0.2
CSMD2-209ENST00000489419 KIF21BO75037 1637 aa13.81□□□□□ -0.2
CSMD2-209ENST00000489419 UBTFP17480 764 aaKnown RBP13.76□□□□□ -0.21
CSMD2-209ENST00000489419 ZEB1P37275 1124 aaPredicted RBP13.75□□□□□ -0.21
CSMD2-209ENST00000489419 PRKCSHP14314 528 aaPredicted RBP13.73□□□□□ -0.21
CSMD2-209ENST00000489419 PRDM2Q13029 1718 aa13.73□□□□□ -0.21
CSMD2-209ENST00000489419 CUX1P39880 1505 aa13.71□□□□□ -0.22
CSMD2-209ENST00000489419 CADPSQ9ULU8 1353 aa13.7□□□□□ -0.22
CSMD2-209ENST00000489419 CC2D2AQ9P2K1 1620 aa13.7□□□□□ -0.22
CSMD2-209ENST00000489419 ERICH3Q5RHP9 1530 aa13.66□□□□□ -0.22
CSMD2-209ENST00000489419 PRXQ9BXM0 1461 aa13.65□□□□□ -0.22
CSMD2-209ENST00000489419 KIF27Q86VH2 1401 aa13.64□□□□□ -0.23
CSMD2-209ENST00000489419 RAPGEF2Q9Y4G8 1499 aa13.64□□□□□ -0.23
CSMD2-209ENST00000489419 CLIP1P30622 1438 aa13.63□□□□□ -0.23
CSMD2-209ENST00000489419 PPARGC1BQ86YN6 1023 aaKnown RBP13.6□□□□□ -0.23
CSMD2-209ENST00000489419 VPS8Q8N3P4 1428 aa13.58□□□□□ -0.24
CSMD2-209ENST00000489419 SLC24A1O60721 1099 aa13.54□□□□□ -0.24
CSMD2-209ENST00000489419 FANCD2Q9BXW9 1451 aa13.53□□□□□ -0.24
CSMD2-209ENST00000489419 FGD5Q6ZNL6 1462 aa13.49□□□□□ -0.25
CSMD2-209ENST00000489419 IGF1RP08069 1367 aa13.49□□□□□ -0.25
CSMD2-209ENST00000489419 CUX2O14529 1486 aa13.49□□□□□ -0.25
CSMD2-209ENST00000489419 APLP2Q06481 763 aa13.48□□□□□ -0.25
CSMD2-209ENST00000489419 DNMBPQ6XZF7 1577 aa13.48□□□□□ -0.25
CSMD2-209ENST00000489419 LAMC3Q9Y6N6 1575 aa13.48□□□□□ -0.25
CSMD2-209ENST00000489419 ARAP1Q96P48 1450 aa13.43□□□□□ -0.26
CSMD2-209ENST00000489419 CARMIL1Q5VZK9 1371 aa13.43□□□□□ -0.26
CSMD2-209ENST00000489419 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
CSMD2-209ENST00000489419 ABCA10Q8WWZ4 1543 aa13.42□□□□□ -0.26
CSMD2-209ENST00000489419 CCER1Q8TC90 406 aaPredicted RBP13.41□□□□□ -0.26
CSMD2-209ENST00000489419 ERICH6Q7L0X2 663 aa13.4□□□□□ -0.26
CSMD2-209ENST00000489419 NESP48681 1621 aa13.39□□□□□ -0.27
CSMD2-209ENST00000489419 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
CSMD2-209ENST00000489419 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
CSMD2-209ENST00000489419 POLA1P09884 1462 aaPredicted RBP13.38□□□□□ -0.27
CSMD2-209ENST00000489419 ARHGAP35Q9NRY4 1499 aa13.37□□□□□ -0.27
CSMD2-209ENST00000489419 RANGAP1P46060 587 aaPredicted RBP13.35□□□□□ -0.27
CSMD2-209ENST00000489419 RAD54L2Q9Y4B4 1467 aa13.33□□□□□ -0.28
CSMD2-209ENST00000489419 URB2Q14146 1524 aaKnown RBP13.33□□□□□ -0.28
CSMD2-209ENST00000489419 CUL7Q14999 1698 aa13.32□□□□□ -0.28
CSMD2-209ENST00000489419 MAP3K1Q13233 1512 aa13.31□□□□□ -0.28
CSMD2-209ENST00000489419 WDR97A6NE52 1622 aa13.29□□□□□ -0.28
CSMD2-209ENST00000489419 FHAD1B1AJZ9 1412 aa13.26□□□□□ -0.29
CSMD2-209ENST00000489419 RRBP1Q9P2E9 1410 aaKnown RBP13.25□□□□□ -0.29
CSMD2-209ENST00000489419 KANK4Q5T7N3 995 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms