RNA–Protein interactions for RNA: ENST00000486524.1

SLX4-203, Transcript of SLX4 structure-specific endonuclease subunit, humanhuman

TSL 2

Gene SLX4, Length 3,075 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLX4-203ENST00000486524 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
SLX4-203ENST00000486524 CCDC180Q9P1Z9 1646 aa20.36■□□□□ 0.85
SLX4-203ENST00000486524 SHROOM4Q9ULL8 1493 aa20.33■□□□□ 0.84
SLX4-203ENST00000486524 ZCCHC6Q5VYS8 1495 aaKnown RBP20.13■□□□□ 0.81
SLX4-203ENST00000486524 DCAF8L2P0C7V8 631 aa20.04■□□□□ 0.8
SLX4-203ENST00000486524 SUPT5HO00267 1087 aaKnown RBP19.82■□□□□ 0.76
SLX4-203ENST00000486524 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
SLX4-203ENST00000486524 ABCC9O60706 1549 aa19.18■□□□□ 0.66
SLX4-203ENST00000486524 SCRIBQ14160 1630 aa19.15■□□□□ 0.66
SLX4-203ENST00000486524 CHIC1Q5VXU3 224 aa19.08■□□□□ 0.64
SLX4-203ENST00000486524 MYO15BQ96JP2 1530 aa19.03■□□□□ 0.64
SLX4-203ENST00000486524 NACADO15069 1562 aa18.9■□□□□ 0.62
SLX4-203ENST00000486524 RSF1Q96T23 1441 aaPredicted RBP18.82■□□□□ 0.6
SLX4-203ENST00000486524 CECR2Q9BXF3 1484 aa18.67■□□□□ 0.58
SLX4-203ENST00000486524 RB1CC1Q8TDY2 1594 aa18.67■□□□□ 0.58
SLX4-203ENST00000486524 MROH2BQ7Z745 1585 aa18.57■□□□□ 0.56
SLX4-203ENST00000486524 LOC105371045A0A1W2PR82 267 aa18.56■□□□□ 0.56
SLX4-203ENST00000486524 WIZO95785 1651 aa18.47■□□□□ 0.55
SLX4-203ENST00000486524 TRIM41Q8WV44 630 aa18.45■□□□□ 0.54
SLX4-203ENST00000486524 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.53
SLX4-203ENST00000486524 BAZ1AQ9NRL2 1556 aaPredicted RBP18.35■□□□□ 0.53
SLX4-203ENST00000486524 FAM9AQ8IZU1 332 aaPredicted RBP18.35■□□□□ 0.53
SLX4-203ENST00000486524 PABPN1Q86U42 306 aaKnown RBP eCLIP18.34■□□□□ 0.53
SLX4-203ENST00000486524 PCGF6Q9BYE7 350 aa18.31■□□□□ 0.52
SLX4-203ENST00000486524 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
SLX4-203ENST00000486524 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
SLX4-203ENST00000486524 BICRAQ9NZM4 1560 aa18.15■□□□□ 0.5
SLX4-203ENST00000486524 TOP2AP11388 1531 aaKnown RBP18.14■□□□□ 0.49
SLX4-203ENST00000486524 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
SLX4-203ENST00000486524 HRCP23327 699 aa18.08■□□□□ 0.48
SLX4-203ENST00000486524 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
SLX4-203ENST00000486524 SMARCA2P51531 1590 aa18.04■□□□□ 0.48
SLX4-203ENST00000486524 ABCC8Q09428 1581 aa18■□□□□ 0.47
SLX4-203ENST00000486524 TRIM26Q12899 539 aaPredicted RBP17.96■□□□□ 0.47
SLX4-203ENST00000486524 PEG3Q9GZU2 1588 aa17.84■□□□□ 0.45
SLX4-203ENST00000486524 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.44
SLX4-203ENST00000486524 PPARGC1BQ86YN6 1023 aaKnown RBP17.83■□□□□ 0.44
SLX4-203ENST00000486524 BAZ1BQ9UIG0 1483 aaKnown RBP17.8■□□□□ 0.44
SLX4-203ENST00000486524 SOGA1O94964 1423 aa17.78■□□□□ 0.44
SLX4-203ENST00000486524 RUSC2Q8N2Y8 1516 aa17.71■□□□□ 0.43
SLX4-203ENST00000486524 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
SLX4-203ENST00000486524 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
SLX4-203ENST00000486524 UBTFP17480 764 aaKnown RBP17.63■□□□□ 0.41
SLX4-203ENST00000486524 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
SLX4-203ENST00000486524 TTBK1Q5TCY1 1321 aaPredicted RBP17.6■□□□□ 0.41
SLX4-203ENST00000486524 CEP162Q5TB80 1403 aa17.58■□□□□ 0.4
SLX4-203ENST00000486524 EEA1Q15075 1411 aa17.58■□□□□ 0.4
SLX4-203ENST00000486524 TNIKQ9UKE5 1360 aa17.53■□□□□ 0.4
SLX4-203ENST00000486524 NCAPD3P42695 1498 aa17.49■□□□□ 0.39
SLX4-203ENST00000486524 GOLGA3Q08378 1498 aa17.49■□□□□ 0.39
SLX4-203ENST00000486524 HMGXB3Q12766 1538 aa17.46■□□□□ 0.39
SLX4-203ENST00000486524 ZEB1P37275 1124 aaPredicted RBP17.42■□□□□ 0.38
SLX4-203ENST00000486524 RANGAP1P46060 587 aaPredicted RBP17.42■□□□□ 0.38
SLX4-203ENST00000486524 CEP164Q9UPV0 1460 aa17.41■□□□□ 0.38
SLX4-203ENST00000486524 TOP2BQ02880 1626 aa17.39■□□□□ 0.37
SLX4-203ENST00000486524 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
SLX4-203ENST00000486524 KIF21BO75037 1637 aa17.36■□□□□ 0.37
SLX4-203ENST00000486524 RAPGEF2Q9Y4G8 1499 aa17.35■□□□□ 0.37
SLX4-203ENST00000486524 BIVM-ERCC5R4GMW8 1640 aa17.31■□□□□ 0.36
SLX4-203ENST00000486524 CLIP1P30622 1438 aa17.31■□□□□ 0.36
SLX4-203ENST00000486524 CFTRP13569 1480 aa17.3■□□□□ 0.36
SLX4-203ENST00000486524 CUX1P39880 1505 aa17.3■□□□□ 0.36
SLX4-203ENST00000486524 CCER1Q8TC90 406 aaPredicted RBP17.29■□□□□ 0.36
SLX4-203ENST00000486524 CC2D2AQ9P2K1 1620 aa17.23■□□□□ 0.35
SLX4-203ENST00000486524 CADPSQ9ULU8 1353 aa17.18■□□□□ 0.34
SLX4-203ENST00000486524 KIF27Q86VH2 1401 aa17.18■□□□□ 0.34
SLX4-203ENST00000486524 APLP2Q06481 763 aa17.17■□□□□ 0.34
SLX4-203ENST00000486524 VPS8Q8N3P4 1428 aa17.17■□□□□ 0.34
SLX4-203ENST00000486524 PRXQ9BXM0 1461 aa17.16■□□□□ 0.34
SLX4-203ENST00000486524 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
SLX4-203ENST00000486524 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
SLX4-203ENST00000486524 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
SLX4-203ENST00000486524 CUX2O14529 1486 aa17.09■□□□□ 0.33
SLX4-203ENST00000486524 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
SLX4-203ENST00000486524 ARAP1Q96P48 1450 aa17.03■□□□□ 0.32
SLX4-203ENST00000486524 FANCD2Q9BXW9 1451 aa17.03■□□□□ 0.32
SLX4-203ENST00000486524 NESP48681 1621 aa17.01■□□□□ 0.31
SLX4-203ENST00000486524 IGF1RP08069 1367 aa17.01■□□□□ 0.31
SLX4-203ENST00000486524 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.31
SLX4-203ENST00000486524 CARMIL1Q5VZK9 1371 aa16.94■□□□□ 0.3
SLX4-203ENST00000486524 PELP1Q8IZL8 1130 aaKnown RBP16.93■□□□□ 0.3
SLX4-203ENST00000486524 ARHGAP35Q9NRY4 1499 aa16.93■□□□□ 0.3
SLX4-203ENST00000486524 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
SLX4-203ENST00000486524 DNAJC5BQ9UF47 199 aa16.93■□□□□ 0.3
SLX4-203ENST00000486524 DNMBPQ6XZF7 1577 aa16.88■□□□□ 0.29
SLX4-203ENST00000486524 TOPBP1Q92547 1522 aa16.88■□□□□ 0.29
SLX4-203ENST00000486524 POLA1P09884 1462 aaPredicted RBP16.87■□□□□ 0.29
SLX4-203ENST00000486524 P3H3Q8IVL6 736 aa16.86■□□□□ 0.29
SLX4-203ENST00000486524 ATP1B4Q9UN42 357 aaPredicted RBP16.81■□□□□ 0.28
SLX4-203ENST00000486524 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
SLX4-203ENST00000486524 LAMC3Q9Y6N6 1575 aa16.79■□□□□ 0.28
SLX4-203ENST00000486524 ITGAEP38570 1179 aa16.79■□□□□ 0.28
SLX4-203ENST00000486524 URB2Q14146 1524 aaKnown RBP16.79■□□□□ 0.28
SLX4-203ENST00000486524 DIEXFQ68CQ4 756 aaKnown RBP16.78■□□□□ 0.28
SLX4-203ENST00000486524 TDRD9Q8NDG6 1382 aaKnown RBP16.76■□□□□ 0.27
SLX4-203ENST00000486524 PDS5BQ9NTI5 1447 aa16.73■□□□□ 0.27
SLX4-203ENST00000486524 RRBP1Q9P2E9 1410 aaKnown RBP16.71■□□□□ 0.27
SLX4-203ENST00000486524 CCNB3Q8WWL7 1395 aa16.71■□□□□ 0.27
SLX4-203ENST00000486524 FHOD3Q2V2M9 1422 aa16.71■□□□□ 0.27
SLX4-203ENST00000486524 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms