RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 AEBP2Q6ZN18 517 aaPredicted RBP16.56■□□□□ 0.24
CUX1-208ENST00000485792 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
CUX1-208ENST00000485792 NISCHQ9Y2I1 1504 aa14.46□□□□□ -0.09
CUX1-208ENST00000485792 SENP3Q9H4L4 574 aaPredicted RBP14.15□□□□□ -0.14
CUX1-208ENST00000485792 PHF23Q9BUL5 403 aaPredicted RBP14.05□□□□□ -0.16
CUX1-208ENST00000485792 FOXD1Q16676 465 aa13.11□□□□□ -0.31
CUX1-208ENST00000485792 PLPPR3Q6T4P5 718 aa12.98□□□□□ -0.33
CUX1-208ENST00000485792 CCDC180Q9P1Z9 1646 aa12.92□□□□□ -0.34
CUX1-208ENST00000485792 ABCC9O60706 1549 aa12.58□□□□□ -0.4
CUX1-208ENST00000485792 ADRA2BP18089 450 aa12.45□□□□□ -0.42
CUX1-208ENST00000485792 PPP6R1Q9UPN7 881 aa12.44□□□□□ -0.42
CUX1-208ENST00000485792 PIAS4Q8N2W9 510 aaPredicted RBP12.37□□□□□ -0.43
CUX1-208ENST00000485792 MSH5O43196 834 aa12.22□□□□□ -0.45
CUX1-208ENST00000485792 ZCCHC6Q5VYS8 1495 aaKnown RBP12.12□□□□□ -0.47
CUX1-208ENST00000485792 UNC13AQ9UPW8 1703 aa12.08□□□□□ -0.47
CUX1-208ENST00000485792 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
CUX1-208ENST00000485792 NACADO15069 1562 aa12.03□□□□□ -0.48
CUX1-208ENST00000485792 MYO15BQ96JP2 1530 aa11.98□□□□□ -0.49
CUX1-208ENST00000485792 DCAF1Q9Y4B6 1507 aa11.96□□□□□ -0.5
CUX1-208ENST00000485792 BICRAQ9NZM4 1560 aa11.92□□□□□ -0.5
CUX1-208ENST00000485792 SCRIBQ14160 1630 aa11.8□□□□□ -0.52
CUX1-208ENST00000485792 DCAF8L2P0C7V8 631 aa11.72□□□□□ -0.53
CUX1-208ENST00000485792 PABPN1Q86U42 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
CUX1-208ENST00000485792 DNAJC5BQ9UF47 199 aa11.63□□□□□ -0.55
CUX1-208ENST00000485792 SHROOM4Q9ULL8 1493 aa11.55□□□□□ -0.56
CUX1-208ENST00000485792 EIF4G1Q04637 1599 aaKnown RBP11.49□□□□□ -0.57
CUX1-208ENST00000485792 SCAF1Q9H7N4 1312 aaKnown RBP11.46□□□□□ -0.57
CUX1-208ENST00000485792 CC2D2AQ9P2K1 1620 aa11.45□□□□□ -0.58
CUX1-208ENST00000485792 POTEDQ86YR6 584 aa11.4□□□□□ -0.58
CUX1-208ENST00000485792 PPP4R3CPQ6ZMV5 832 aa11.39□□□□□ -0.59
CUX1-208ENST00000485792 CECR2Q9BXF3 1484 aa11.35□□□□□ -0.59
CUX1-208ENST00000485792 MAPK8IP2Q13387 824 aaPredicted RBP11.34□□□□□ -0.59
CUX1-208ENST00000485792 SMARCA4P51532 1647 aa11.29□□□□□ -0.6
CUX1-208ENST00000485792 DMRT2Q9Y5R5 561 aa11.25□□□□□ -0.61
CUX1-208ENST00000485792 KCNA4P22459 653 aa11.22□□□□□ -0.61
CUX1-208ENST00000485792 MROH2BQ7Z745 1585 aa11.22□□□□□ -0.61
CUX1-208ENST00000485792 PEG3Q9GZU2 1588 aa11.19□□□□□ -0.62
CUX1-208ENST00000485792 ATAD2BQ9ULI0 1458 aa11.16□□□□□ -0.62
CUX1-208ENST00000485792 BAZ1AQ9NRL2 1556 aaPredicted RBP11.16□□□□□ -0.62
CUX1-208ENST00000485792 CNKSR2Q8WXI2 1034 aa11.13□□□□□ -0.63
CUX1-208ENST00000485792 WIZO95785 1651 aa11.13□□□□□ -0.63
CUX1-208ENST00000485792 HMGXB3Q12766 1538 aa11.12□□□□□ -0.63
CUX1-208ENST00000485792 NCAPD3P42695 1498 aa11.11□□□□□ -0.63
CUX1-208ENST00000485792 NCBP3Q53F19 620 aaKnown RBP11.09□□□□□ -0.63
CUX1-208ENST00000485792 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
CUX1-208ENST00000485792 RSF1Q96T23 1441 aaPredicted RBP11□□□□□ -0.65
CUX1-208ENST00000485792 BAZ1BQ9UIG0 1483 aaKnown RBP11□□□□□ -0.65
CUX1-208ENST00000485792 NESP48681 1621 aa10.98□□□□□ -0.65
CUX1-208ENST00000485792 RNF216Q9NWF9 866 aaPredicted RBP10.95□□□□□ -0.66
CUX1-208ENST00000485792 NPM3O75607 178 aaKnown RBP10.94□□□□□ -0.66
CUX1-208ENST00000485792 HOXD11P31277 338 aaPredicted RBP10.94□□□□□ -0.66
CUX1-208ENST00000485792 TOP2AP11388 1531 aaKnown RBP10.94□□□□□ -0.66
CUX1-208ENST00000485792 KIF21AQ7Z4S6 1674 aa10.91□□□□□ -0.66
CUX1-208ENST00000485792 THOC2Q8NI27 1593 aaKnown RBP10.9□□□□□ -0.67
CUX1-208ENST00000485792 LAMC3Q9Y6N6 1575 aa10.83□□□□□ -0.68
CUX1-208ENST00000485792 DCAF8L1A6NGE4 600 aa10.82□□□□□ -0.68
CUX1-208ENST00000485792 PRDM2Q13029 1718 aa10.81□□□□□ -0.68
CUX1-208ENST00000485792 CCDC88BA6NC98 1476 aa10.76□□□□□ -0.69
CUX1-208ENST00000485792 CFTRP13569 1480 aa10.74□□□□□ -0.69
CUX1-208ENST00000485792 CADPSQ9ULU8 1353 aa10.71□□□□□ -0.69
CUX1-208ENST00000485792 WDR62O43379 1518 aa10.7□□□□□ -0.7
CUX1-208ENST00000485792 SLC4A1APQ9BWU0 796 aaKnown RBP10.7□□□□□ -0.7
CUX1-208ENST00000485792 ERCC6Q03468 1493 aa10.69□□□□□ -0.7
CUX1-208ENST00000485792 URB2Q14146 1524 aaKnown RBP10.68□□□□□ -0.7
CUX1-208ENST00000485792 CUX2O14529 1486 aa10.67□□□□□ -0.7
CUX1-208ENST00000485792 FANCD2Q9BXW9 1451 aa10.66□□□□□ -0.7
CUX1-208ENST00000485792 MRC2Q9UBG0 1479 aa10.64□□□□□ -0.71
CUX1-208ENST00000485792 CEP164Q9UPV0 1460 aa10.62□□□□□ -0.71
CUX1-208ENST00000485792 PDS5BQ9NTI5 1447 aa10.6□□□□□ -0.71
CUX1-208ENST00000485792 TOPBP1Q92547 1522 aa10.54□□□□□ -0.72
CUX1-208ENST00000485792 WDR97A6NE52 1622 aa10.53□□□□□ -0.72
CUX1-208ENST00000485792 TARBP1Q13395 1621 aaKnown RBP10.53□□□□□ -0.72
CUX1-208ENST00000485792 CUX1P39880 1505 aa10.53□□□□□ -0.72
CUX1-208ENST00000485792 DNMBPQ6XZF7 1577 aa10.52□□□□□ -0.72
CUX1-208ENST00000485792 ZNF608Q9ULD9 1512 aaPredicted RBP10.49□□□□□ -0.73
CUX1-208ENST00000485792 EHMT2Q96KQ7 1210 aa10.49□□□□□ -0.73
CUX1-208ENST00000485792 EIF4G3O43432 1585 aaKnown RBP10.48□□□□□ -0.73
CUX1-208ENST00000485792 SUPT5HO00267 1087 aaKnown RBP10.48□□□□□ -0.73
CUX1-208ENST00000485792 SYNJ1O43426 1573 aa10.48□□□□□ -0.73
CUX1-208ENST00000485792 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.47□□□□□ -0.733e-6■■■□□ 16.7
CUX1-208ENST00000485792 ABCC8Q09428 1581 aa10.47□□□□□ -0.73
CUX1-208ENST00000485792 POLA1P09884 1462 aaPredicted RBP10.46□□□□□ -0.74
CUX1-208ENST00000485792 BIVM-ERCC5R4GMW8 1640 aa10.44□□□□□ -0.74
CUX1-208ENST00000485792 FGD5Q6ZNL6 1462 aa10.42□□□□□ -0.74
CUX1-208ENST00000485792 RAD54L2Q9Y4B4 1467 aa10.42□□□□□ -0.74
CUX1-208ENST00000485792 RNF39Q9H2S5 420 aa10.41□□□□□ -0.74
CUX1-208ENST00000485792 TOP2BQ02880 1626 aa10.39□□□□□ -0.75
CUX1-208ENST00000485792 ABCA5Q8WWZ7 1642 aa10.39□□□□□ -0.75
CUX1-208ENST00000485792 IFT140Q96RY7 1462 aa10.38□□□□□ -0.75
CUX1-208ENST00000485792 CHD1O14646 1710 aa10.38□□□□□ -0.75
CUX1-208ENST00000485792 PBRM1Q86U86 1689 aa10.37□□□□□ -0.75
CUX1-208ENST00000485792 CSRNP3Q8WYN3 585 aa10.34□□□□□ -0.75
CUX1-208ENST00000485792 ZBTB22O15209 634 aa10.33□□□□□ -0.76
CUX1-208ENST00000485792 AQRO60306 1485 aaKnown RBP eCLIP10.33□□□□□ -0.762e-6■■■□□ 18.3
CUX1-208ENST00000485792 SLC4A2P04920 1241 aa10.31□□□□□ -0.76
CUX1-208ENST00000485792 CACNB1Q02641 598 aaPredicted RBP10.31□□□□□ -0.76
CUX1-208ENST00000485792 ABCA10Q8WWZ4 1543 aa10.3□□□□□ -0.76
CUX1-208ENST00000485792 C1QBPQ07021 282 aaKnown RBP10.3□□□□□ -0.76
CUX1-208ENST00000485792 FOXD4L1Q9NU39 408 aa10.3□□□□□ -0.76
CUX1-208ENST00000485792 WRNQ14191 1432 aaPredicted RBP eCLIP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms