RNA–Protein interactions for RNA: ENST00000484487.1

PDZRN3-209, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 3

Gene PDZRN3, Length 406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-209ENST00000484487 AEBP2Q6ZN18 517 aaPredicted RBP16.86■□□□□ 0.29
PDZRN3-209ENST00000484487 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
PDZRN3-209ENST00000484487 NISCHQ9Y2I1 1504 aa15.15■□□□□ 0.02
PDZRN3-209ENST00000484487 SENP3Q9H4L4 574 aaPredicted RBP14.37□□□□□ -0.11
PDZRN3-209ENST00000484487 PHF23Q9BUL5 403 aaPredicted RBP14.23□□□□□ -0.13
PDZRN3-209ENST00000484487 CCDC180Q9P1Z9 1646 aa13.43□□□□□ -0.26
PDZRN3-209ENST00000484487 FOXD1Q16676 465 aa13.38□□□□□ -0.27
PDZRN3-209ENST00000484487 PLPPR3Q6T4P5 718 aa13.03□□□□□ -0.32
PDZRN3-209ENST00000484487 ABCC9O60706 1549 aa12.72□□□□□ -0.37
PDZRN3-209ENST00000484487 ZCCHC6Q5VYS8 1495 aaKnown RBP12.67□□□□□ -0.38
PDZRN3-209ENST00000484487 ADRA2BP18089 450 aa12.65□□□□□ -0.38
PDZRN3-209ENST00000484487 PPP6R1Q9UPN7 881 aa12.64□□□□□ -0.39
PDZRN3-209ENST00000484487 DCAF1Q9Y4B6 1507 aa12.58□□□□□ -0.4
PDZRN3-209ENST00000484487 PIAS4Q8N2W9 510 aaPredicted RBP12.57□□□□□ -0.4
PDZRN3-209ENST00000484487 MYO15BQ96JP2 1530 aa12.52□□□□□ -0.4
PDZRN3-209ENST00000484487 NACADO15069 1562 aa12.51□□□□□ -0.41
PDZRN3-209ENST00000484487 DCAF8L2P0C7V8 631 aa12.5□□□□□ -0.41
PDZRN3-209ENST00000484487 RB1CC1Q8TDY2 1594 aa12.46□□□□□ -0.42
PDZRN3-209ENST00000484487 MSH5O43196 834 aa12.44□□□□□ -0.42
PDZRN3-209ENST00000484487 UNC13AQ9UPW8 1703 aa12.23□□□□□ -0.45
PDZRN3-209ENST00000484487 SCRIBQ14160 1630 aa12.19□□□□□ -0.46
PDZRN3-209ENST00000484487 SHROOM4Q9ULL8 1493 aa12.08□□□□□ -0.47
PDZRN3-209ENST00000484487 BICRAQ9NZM4 1560 aa12.01□□□□□ -0.49
PDZRN3-209ENST00000484487 PABPN1Q86U42 306 aaKnown RBP eCLIP11.9□□□□□ -0.5
PDZRN3-209ENST00000484487 POTEDQ86YR6 584 aa11.86□□□□□ -0.51
PDZRN3-209ENST00000484487 BAZ1AQ9NRL2 1556 aaPredicted RBP11.75□□□□□ -0.53
PDZRN3-209ENST00000484487 SMARCA4P51532 1647 aa11.71□□□□□ -0.53
PDZRN3-209ENST00000484487 CECR2Q9BXF3 1484 aa11.71□□□□□ -0.53
PDZRN3-209ENST00000484487 EIF4G1Q04637 1599 aaKnown RBP11.69□□□□□ -0.54
PDZRN3-209ENST00000484487 MROH2BQ7Z745 1585 aa11.65□□□□□ -0.54
PDZRN3-209ENST00000484487 RSF1Q96T23 1441 aaPredicted RBP11.62□□□□□ -0.55
PDZRN3-209ENST00000484487 PEG3Q9GZU2 1588 aa11.6□□□□□ -0.55
PDZRN3-209ENST00000484487 SMARCA2P51531 1590 aa11.59□□□□□ -0.55
PDZRN3-209ENST00000484487 WIZO95785 1651 aa11.59□□□□□ -0.55
PDZRN3-209ENST00000484487 CC2D2AQ9P2K1 1620 aa11.57□□□□□ -0.56
PDZRN3-209ENST00000484487 MAPK8IP2Q13387 824 aaPredicted RBP11.57□□□□□ -0.56
PDZRN3-209ENST00000484487 SCAF1Q9H7N4 1312 aaKnown RBP11.57□□□□□ -0.56
PDZRN3-209ENST00000484487 SUPT5HO00267 1087 aaKnown RBP11.55□□□□□ -0.56
PDZRN3-209ENST00000484487 ATAD2BQ9ULI0 1458 aa11.53□□□□□ -0.56
PDZRN3-209ENST00000484487 HMGXB3Q12766 1538 aa11.5□□□□□ -0.57
PDZRN3-209ENST00000484487 NCAPD3P42695 1498 aa11.49□□□□□ -0.57
PDZRN3-209ENST00000484487 BAZ1BQ9UIG0 1483 aaKnown RBP11.48□□□□□ -0.57
PDZRN3-209ENST00000484487 TOP2AP11388 1531 aaKnown RBP11.48□□□□□ -0.57
PDZRN3-209ENST00000484487 PPP4R3CPQ6ZMV5 832 aa11.46□□□□□ -0.57
PDZRN3-209ENST00000484487 DMRT2Q9Y5R5 561 aa11.41□□□□□ -0.58
PDZRN3-209ENST00000484487 DNAJC5BQ9UF47 199 aa11.38□□□□□ -0.59
PDZRN3-209ENST00000484487 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
PDZRN3-209ENST00000484487 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
PDZRN3-209ENST00000484487 LAMC3Q9Y6N6 1575 aa11.2□□□□□ -0.62
PDZRN3-209ENST00000484487 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
PDZRN3-209ENST00000484487 CFTRP13569 1480 aa11.17□□□□□ -0.62
PDZRN3-209ENST00000484487 CADPSQ9ULU8 1353 aa11.16□□□□□ -0.62
PDZRN3-209ENST00000484487 NESP48681 1621 aa11.09□□□□□ -0.63
PDZRN3-209ENST00000484487 PDS5BQ9NTI5 1447 aa11.09□□□□□ -0.63
PDZRN3-209ENST00000484487 NCBP3Q53F19 620 aaKnown RBP11.08□□□□□ -0.64
PDZRN3-209ENST00000484487 KIF21AQ7Z4S6 1674 aa11.06□□□□□ -0.64
PDZRN3-209ENST00000484487 DCAF8L1A6NGE4 600 aa11.06□□□□□ -0.64
PDZRN3-209ENST00000484487 FANCD2Q9BXW9 1451 aa11.04□□□□□ -0.64
PDZRN3-209ENST00000484487 HOXD11P31277 338 aaPredicted RBP11.03□□□□□ -0.64
PDZRN3-209ENST00000484487 CEP164Q9UPV0 1460 aa11.02□□□□□ -0.65
PDZRN3-209ENST00000484487 RNF216Q9NWF9 866 aaPredicted RBP11.02□□□□□ -0.65
PDZRN3-209ENST00000484487 ABCC8Q09428 1581 aa10.99□□□□□ -0.65
PDZRN3-209ENST00000484487 WRNQ14191 1432 aaPredicted RBP eCLIP10.98□□□□□ -0.65
PDZRN3-209ENST00000484487 ERCC6Q03468 1493 aa10.98□□□□□ -0.65
PDZRN3-209ENST00000484487 BIVM-ERCC5R4GMW8 1640 aa10.98□□□□□ -0.65
PDZRN3-209ENST00000484487 TOP2BQ02880 1626 aa10.95□□□□□ -0.66
PDZRN3-209ENST00000484487 DNMBPQ6XZF7 1577 aa10.95□□□□□ -0.66
PDZRN3-209ENST00000484487 TRIM41Q8WV44 630 aa10.94□□□□□ -0.66
PDZRN3-209ENST00000484487 SYNJ1O43426 1573 aa10.94□□□□□ -0.66
PDZRN3-209ENST00000484487 MRC2Q9UBG0 1479 aa10.93□□□□□ -0.66
PDZRN3-209ENST00000484487 CUX1P39880 1505 aa10.92□□□□□ -0.66
PDZRN3-209ENST00000484487 THOC2Q8NI27 1593 aaKnown RBP10.9□□□□□ -0.66
PDZRN3-209ENST00000484487 TOPBP1Q92547 1522 aa10.9□□□□□ -0.66
PDZRN3-209ENST00000484487 WDR62O43379 1518 aa10.89□□□□□ -0.67
PDZRN3-209ENST00000484487 URB2Q14146 1524 aaKnown RBP10.89□□□□□ -0.67
PDZRN3-209ENST00000484487 NPM3O75607 178 aaKnown RBP10.89□□□□□ -0.67
PDZRN3-209ENST00000484487 KCNA4P22459 653 aa10.86□□□□□ -0.67
PDZRN3-209ENST00000484487 FGD5Q6ZNL6 1462 aa10.85□□□□□ -0.67
PDZRN3-209ENST00000484487 POLA1P09884 1462 aaPredicted RBP10.82□□□□□ -0.68
PDZRN3-209ENST00000484487 WDR97A6NE52 1622 aa10.8□□□□□ -0.68
PDZRN3-209ENST00000484487 SOGA1O94964 1423 aa10.79□□□□□ -0.68
PDZRN3-209ENST00000484487 TARBP1Q13395 1621 aaKnown RBP10.79□□□□□ -0.68
PDZRN3-209ENST00000484487 IFT140Q96RY7 1462 aa10.78□□□□□ -0.68
PDZRN3-209ENST00000484487 EEA1Q15075 1411 aa10.77□□□□□ -0.68
PDZRN3-209ENST00000484487 ABCA10Q8WWZ4 1543 aa10.77□□□□□ -0.69
PDZRN3-209ENST00000484487 CUX2O14529 1486 aa10.76□□□□□ -0.69
PDZRN3-209ENST00000484487 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
PDZRN3-209ENST00000484487 RAD54L2Q9Y4B4 1467 aa10.74□□□□□ -0.69
PDZRN3-209ENST00000484487 KIF27Q86VH2 1401 aa10.74□□□□□ -0.69
PDZRN3-209ENST00000484487 ABCA5Q8WWZ7 1642 aa10.72□□□□□ -0.69
PDZRN3-209ENST00000484487 PBRM1Q86U86 1689 aa10.72□□□□□ -0.69
PDZRN3-209ENST00000484487 EIF4G3O43432 1585 aaKnown RBP10.69□□□□□ -0.7
PDZRN3-209ENST00000484487 GAPVD1Q14C86 1478 aa10.68□□□□□ -0.7
PDZRN3-209ENST00000484487 CUL7Q14999 1698 aa10.68□□□□□ -0.7
PDZRN3-209ENST00000484487 RUSC2Q8N2Y8 1516 aa10.68□□□□□ -0.7
PDZRN3-209ENST00000484487 ERICH3Q5RHP9 1530 aa10.67□□□□□ -0.7
PDZRN3-209ENST00000484487 CSRNP3Q8WYN3 585 aa10.66□□□□□ -0.7
PDZRN3-209ENST00000484487 TDRD9Q8NDG6 1382 aaKnown RBP10.65□□□□□ -0.7
PDZRN3-209ENST00000484487 ZNF608Q9ULD9 1512 aaPredicted RBP10.65□□□□□ -0.7
PDZRN3-209ENST00000484487 FAM9AQ8IZU1 332 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms