RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 NISCHQ9Y2I1 1504 aa17.6■□□□□ 0.41
PTPRD-209ENST00000477552 CCDC180Q9P1Z9 1646 aa15.27■□□□□ 0.03
PTPRD-209ENST00000477552 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
PTPRD-209ENST00000477552 DCAF1Q9Y4B6 1507 aa14.72□□□□□ -0.05
PTPRD-209ENST00000477552 SHROOM4Q9ULL8 1493 aa14.43□□□□□ -0.1
PTPRD-209ENST00000477552 MYO15BQ96JP2 1530 aa14.4□□□□□ -0.1
PTPRD-209ENST00000477552 SUPT5HO00267 1087 aaKnown RBP14.21□□□□□ -0.13
PTPRD-209ENST00000477552 DCAF8L2P0C7V8 631 aa14.18□□□□□ -0.14
PTPRD-209ENST00000477552 NACADO15069 1562 aa14.08□□□□□ -0.16
PTPRD-209ENST00000477552 ABCC9O60706 1549 aa14.04□□□□□ -0.16
PTPRD-209ENST00000477552 CHIC1Q5VXU3 224 aa13.94□□□□□ -0.18
PTPRD-209ENST00000477552 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
PTPRD-209ENST00000477552 RB1CC1Q8TDY2 1594 aa13.82□□□□□ -0.2
PTPRD-209ENST00000477552 RSF1Q96T23 1441 aaPredicted RBP13.78□□□□□ -0.2
PTPRD-209ENST00000477552 AEBP2Q6ZN18 517 aaPredicted RBP13.76□□□□□ -0.21
PTPRD-209ENST00000477552 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
PTPRD-209ENST00000477552 MROH2BQ7Z745 1585 aa13.51□□□□□ -0.25
PTPRD-209ENST00000477552 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
PTPRD-209ENST00000477552 CECR2Q9BXF3 1484 aa13.47□□□□□ -0.25
PTPRD-209ENST00000477552 UNC13AQ9UPW8 1703 aa13.44□□□□□ -0.26
PTPRD-209ENST00000477552 WIZO95785 1651 aa13.44□□□□□ -0.26
PTPRD-209ENST00000477552 HRCP23327 699 aa13.43□□□□□ -0.26
PTPRD-209ENST00000477552 TOP2AP11388 1531 aaKnown RBP13.43□□□□□ -0.26
PTPRD-209ENST00000477552 SMARCA4P51532 1647 aa13.42□□□□□ -0.26
PTPRD-209ENST00000477552 TRIM26Q12899 539 aaPredicted RBP13.36□□□□□ -0.27
PTPRD-209ENST00000477552 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
PTPRD-209ENST00000477552 PEG3Q9GZU2 1588 aa13.32□□□□□ -0.28
PTPRD-209ENST00000477552 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
PTPRD-209ENST00000477552 LOC105371045A0A1W2PR82 267 aa13.28□□□□□ -0.28
PTPRD-209ENST00000477552 EEA1Q15075 1411 aa13.28□□□□□ -0.28
PTPRD-209ENST00000477552 ZEB1P37275 1124 aaPredicted RBP13.27□□□□□ -0.29
PTPRD-209ENST00000477552 SMARCA2P51531 1590 aa13.25□□□□□ -0.29
PTPRD-209ENST00000477552 BICRAQ9NZM4 1560 aa13.23□□□□□ -0.29
PTPRD-209ENST00000477552 CCDC88BA6NC98 1476 aa13.21□□□□□ -0.3
PTPRD-209ENST00000477552 WRNQ14191 1432 aaPredicted RBP eCLIP13.07□□□□□ -0.32
PTPRD-209ENST00000477552 BAZ1BQ9UIG0 1483 aaKnown RBP13.04□□□□□ -0.32
PTPRD-209ENST00000477552 ATAD2BQ9ULI0 1458 aa13.04□□□□□ -0.32
PTPRD-209ENST00000477552 TNIKQ9UKE5 1360 aa13.04□□□□□ -0.32
PTPRD-209ENST00000477552 FAM9AQ8IZU1 332 aaPredicted RBP13.03□□□□□ -0.32
PTPRD-209ENST00000477552 ABCC8Q09428 1581 aa13□□□□□ -0.33
PTPRD-209ENST00000477552 HMGXB3Q12766 1538 aa13□□□□□ -0.33
PTPRD-209ENST00000477552 GOLGA3Q08378 1498 aa12.98□□□□□ -0.33
PTPRD-209ENST00000477552 KIF21BO75037 1637 aa12.98□□□□□ -0.33
PTPRD-209ENST00000477552 CSRNP3Q8WYN3 585 aa12.97□□□□□ -0.33
PTPRD-209ENST00000477552 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.34
PTPRD-209ENST00000477552 NCAPD3P42695 1498 aa12.92□□□□□ -0.34
PTPRD-209ENST00000477552 CEP162Q5TB80 1403 aa12.92□□□□□ -0.34
PTPRD-209ENST00000477552 PABPN1Q86U42 306 aaKnown RBP eCLIP12.92□□□□□ -0.34
PTPRD-209ENST00000477552 TOP2BQ02880 1626 aa12.89□□□□□ -0.35
PTPRD-209ENST00000477552 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
PTPRD-209ENST00000477552 SOGA1O94964 1423 aa12.86□□□□□ -0.35
PTPRD-209ENST00000477552 SYNJ1O43426 1573 aa12.86□□□□□ -0.35
PTPRD-209ENST00000477552 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
PTPRD-209ENST00000477552 ERICH3Q5RHP9 1530 aa12.83□□□□□ -0.36
PTPRD-209ENST00000477552 UBTFP17480 764 aaKnown RBP12.81□□□□□ -0.36
PTPRD-209ENST00000477552 CFTRP13569 1480 aa12.75□□□□□ -0.37
PTPRD-209ENST00000477552 PPARGC1BQ86YN6 1023 aaKnown RBP12.74□□□□□ -0.37
PTPRD-209ENST00000477552 CLIP1P30622 1438 aa12.73□□□□□ -0.37
PTPRD-209ENST00000477552 VPS8Q8N3P4 1428 aa12.73□□□□□ -0.37
PTPRD-209ENST00000477552 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
PTPRD-209ENST00000477552 APLP2Q06481 763 aa12.7□□□□□ -0.38
PTPRD-209ENST00000477552 KIF27Q86VH2 1401 aa12.7□□□□□ -0.38
PTPRD-209ENST00000477552 PRXQ9BXM0 1461 aa12.68□□□□□ -0.38
PTPRD-209ENST00000477552 CCER1Q8TC90 406 aaPredicted RBP12.68□□□□□ -0.38
PTPRD-209ENST00000477552 EHMT2Q96KQ7 1210 aa12.68□□□□□ -0.38
PTPRD-209ENST00000477552 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
PTPRD-209ENST00000477552 CUX1P39880 1505 aa12.62□□□□□ -0.39
PTPRD-209ENST00000477552 CADPSQ9ULU8 1353 aa12.6□□□□□ -0.39
PTPRD-209ENST00000477552 CLSPNQ9HAW4 1339 aa12.6□□□□□ -0.39
PTPRD-209ENST00000477552 MAP3K1Q13233 1512 aa12.56□□□□□ -0.4
PTPRD-209ENST00000477552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.52□□□□□ -0.41
PTPRD-209ENST00000477552 CC2D2AQ9P2K1 1620 aa12.49□□□□□ -0.41
PTPRD-209ENST00000477552 ARAP1Q96P48 1450 aa12.48□□□□□ -0.41
PTPRD-209ENST00000477552 DNMBPQ6XZF7 1577 aa12.47□□□□□ -0.41
PTPRD-209ENST00000477552 CUL7Q14999 1698 aa12.46□□□□□ -0.41
PTPRD-209ENST00000477552 LAMC3Q9Y6N6 1575 aa12.46□□□□□ -0.42
PTPRD-209ENST00000477552 FHAD1B1AJZ9 1412 aa12.45□□□□□ -0.42
PTPRD-209ENST00000477552 CUX2O14529 1486 aa12.45□□□□□ -0.42
PTPRD-209ENST00000477552 RRBP1Q9P2E9 1410 aaKnown RBP12.44□□□□□ -0.42
PTPRD-209ENST00000477552 FGD5Q6ZNL6 1462 aa12.43□□□□□ -0.42
PTPRD-209ENST00000477552 FANCD2Q9BXW9 1451 aa12.43□□□□□ -0.42
PTPRD-209ENST00000477552 IGF1RP08069 1367 aa12.43□□□□□ -0.42
PTPRD-209ENST00000477552 EFCAB5A4FU69 1503 aa12.42□□□□□ -0.42
PTPRD-209ENST00000477552 CARMIL1Q5VZK9 1371 aa12.42□□□□□ -0.42
PTPRD-209ENST00000477552 ABCA10Q8WWZ4 1543 aa12.42□□□□□ -0.42
PTPRD-209ENST00000477552 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
PTPRD-209ENST00000477552 CENPBP07199 599 aaPredicted RBP12.41□□□□□ -0.42
PTPRD-209ENST00000477552 ARHGAP35Q9NRY4 1499 aa12.4□□□□□ -0.42
PTPRD-209ENST00000477552 DIEXFQ68CQ4 756 aaKnown RBP12.4□□□□□ -0.42
PTPRD-209ENST00000477552 PELP1Q8IZL8 1130 aaKnown RBP12.37□□□□□ -0.43
PTPRD-209ENST00000477552 AQRO60306 1485 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTPRD-209ENST00000477552 TIAM1Q13009 1591 aa12.36□□□□□ -0.43
PTPRD-209ENST00000477552 CTTNBP2Q8WZ74 1663 aa12.35□□□□□ -0.43
PTPRD-209ENST00000477552 TOPBP1Q92547 1522 aa12.35□□□□□ -0.43
PTPRD-209ENST00000477552 CCNB3Q8WWL7 1395 aa12.34□□□□□ -0.43
PTPRD-209ENST00000477552 CFAP43Q8NDM7 1665 aa12.34□□□□□ -0.43
PTPRD-209ENST00000477552 PDS5BQ9NTI5 1447 aa12.34□□□□□ -0.43
PTPRD-209ENST00000477552 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.33□□□□□ -0.44
PTPRD-209ENST00000477552 FYCO1Q9BQS8 1478 aa12.33□□□□□ -0.44
PTPRD-209ENST00000477552 HNRNPUL2Q1KMD3 747 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms