RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 NISCHQ9Y2I1 1504 aa27.26■■□□□ 1.95
HLA-DMA-208ENST00000477541 ABCC9O60706 1549 aa23.99■■□□□ 1.43
HLA-DMA-208ENST00000477541 CCDC180Q9P1Z9 1646 aa23.37■■□□□ 1.33
HLA-DMA-208ENST00000477541 DNAJC5BQ9UF47 199 aa23.19■■□□□ 1.3
HLA-DMA-208ENST00000477541 ZCCHC6Q5VYS8 1495 aaKnown RBP23.17■■□□□ 1.3
HLA-DMA-208ENST00000477541 SHROOM4Q9ULL8 1493 aa22.98■■□□□ 1.27
HLA-DMA-208ENST00000477541 SUPT5HO00267 1087 aaKnown RBP22.74■■□□□ 1.23
HLA-DMA-208ENST00000477541 DCAF1Q9Y4B6 1507 aa22.62■■□□□ 1.21
HLA-DMA-208ENST00000477541 RB1CC1Q8TDY2 1594 aa22.58■■□□□ 1.21
HLA-DMA-208ENST00000477541 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
HLA-DMA-208ENST00000477541 HRCP23327 699 aa22.46■■□□□ 1.19
HLA-DMA-208ENST00000477541 MYO15BQ96JP2 1530 aa22.43■■□□□ 1.18
HLA-DMA-208ENST00000477541 NACADO15069 1562 aa22.28■■□□□ 1.16
HLA-DMA-208ENST00000477541 PABPN1Q86U42 306 aaKnown RBP eCLIP22.19■■□□□ 1.14
HLA-DMA-208ENST00000477541 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.12
HLA-DMA-208ENST00000477541 PCGF6Q9BYE7 350 aa21.98■■□□□ 1.11
HLA-DMA-208ENST00000477541 BICRAQ9NZM4 1560 aa21.95■■□□□ 1.1
HLA-DMA-208ENST00000477541 DCAF8L2P0C7V8 631 aa21.94■■□□□ 1.1
HLA-DMA-208ENST00000477541 DNAJC5Q9H3Z4 198 aa21.9■■□□□ 1.1
HLA-DMA-208ENST00000477541 TRIM26Q12899 539 aaPredicted RBP21.75■■□□□ 1.07
HLA-DMA-208ENST00000477541 CECR2Q9BXF3 1484 aa21.74■■□□□ 1.07
HLA-DMA-208ENST00000477541 CC2D2AQ9P2K1 1620 aa21.67■■□□□ 1.06
HLA-DMA-208ENST00000477541 ZEB1P37275 1124 aaPredicted RBP21.64■■□□□ 1.06
HLA-DMA-208ENST00000477541 RSF1Q96T23 1441 aaPredicted RBP21.6■■□□□ 1.05
HLA-DMA-208ENST00000477541 LOC105371045A0A1W2PR82 267 aa21.59■■□□□ 1.05
HLA-DMA-208ENST00000477541 PPARGC1BQ86YN6 1023 aaKnown RBP21.56■■□□□ 1.04
HLA-DMA-208ENST00000477541 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
HLA-DMA-208ENST00000477541 EIF4G1Q04637 1599 aaKnown RBP21.46■■□□□ 1.03
HLA-DMA-208ENST00000477541 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
HLA-DMA-208ENST00000477541 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
HLA-DMA-208ENST00000477541 BAZ1AQ9NRL2 1556 aaPredicted RBP21.1■□□□□ 0.97
HLA-DMA-208ENST00000477541 CUX2O14529 1486 aa21.08■□□□□ 0.97
HLA-DMA-208ENST00000477541 MROH2BQ7Z745 1585 aa21.07■□□□□ 0.96
HLA-DMA-208ENST00000477541 WIZO95785 1651 aa20.99■□□□□ 0.95
HLA-DMA-208ENST00000477541 FAM9AQ8IZU1 332 aaPredicted RBP20.9■□□□□ 0.94
HLA-DMA-208ENST00000477541 WRNQ14191 1432 aaPredicted RBP eCLIP20.88■□□□□ 0.93
HLA-DMA-208ENST00000477541 TOP2AP11388 1531 aaKnown RBP20.85■□□□□ 0.93
HLA-DMA-208ENST00000477541 ERCC6Q03468 1493 aa20.78■□□□□ 0.92
HLA-DMA-208ENST00000477541 EEA1Q15075 1411 aa20.77■□□□□ 0.92
HLA-DMA-208ENST00000477541 SCAF1Q9H7N4 1312 aaKnown RBP20.75■□□□□ 0.91
HLA-DMA-208ENST00000477541 SMARCA4P51532 1647 aa20.71■□□□□ 0.91
HLA-DMA-208ENST00000477541 SMARCA2P51531 1590 aa20.67■□□□□ 0.9
HLA-DMA-208ENST00000477541 TNIKQ9UKE5 1360 aa20.66■□□□□ 0.9
HLA-DMA-208ENST00000477541 CCER1Q8TC90 406 aaPredicted RBP20.64■□□□□ 0.9
HLA-DMA-208ENST00000477541 CEP162Q5TB80 1403 aa20.61■□□□□ 0.89
HLA-DMA-208ENST00000477541 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
HLA-DMA-208ENST00000477541 ACIN1Q9UKV3 1341 aaKnown RBP20.6■□□□□ 0.89
HLA-DMA-208ENST00000477541 NCAPD3P42695 1498 aa20.59■□□□□ 0.89
HLA-DMA-208ENST00000477541 CENPBP07199 599 aaPredicted RBP20.56■□□□□ 0.88
HLA-DMA-208ENST00000477541 ABCC8Q09428 1581 aa20.55■□□□□ 0.88
HLA-DMA-208ENST00000477541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.53■□□□□ 0.88
HLA-DMA-208ENST00000477541 GOLGA3Q08378 1498 aa20.49■□□□□ 0.87
HLA-DMA-208ENST00000477541 EHMT2Q96KQ7 1210 aa20.49■□□□□ 0.87
HLA-DMA-208ENST00000477541 DIEXFQ68CQ4 756 aaKnown RBP20.47■□□□□ 0.87
HLA-DMA-208ENST00000477541 PEG3Q9GZU2 1588 aa20.45■□□□□ 0.86
HLA-DMA-208ENST00000477541 KIF21BO75037 1637 aa20.43■□□□□ 0.86
HLA-DMA-208ENST00000477541 MYT1Q01538 1121 aa20.42■□□□□ 0.86
HLA-DMA-208ENST00000477541 CSRNP3Q8WYN3 585 aa20.41■□□□□ 0.86
HLA-DMA-208ENST00000477541 SOGA1O94964 1423 aa20.41■□□□□ 0.86
HLA-DMA-208ENST00000477541 THOC2Q8NI27 1593 aaKnown RBP20.4■□□□□ 0.86
HLA-DMA-208ENST00000477541 NESP48681 1621 aa20.4■□□□□ 0.86
HLA-DMA-208ENST00000477541 NEUROD1Q13562 356 aa20.38■□□□□ 0.85
HLA-DMA-208ENST00000477541 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
HLA-DMA-208ENST00000477541 CEP164Q9UPV0 1460 aa20.36■□□□□ 0.85
HLA-DMA-208ENST00000477541 HMGXB3Q12766 1538 aa20.35■□□□□ 0.85
HLA-DMA-208ENST00000477541 BAZ1BQ9UIG0 1483 aaKnown RBP20.32■□□□□ 0.84
HLA-DMA-208ENST00000477541 ZNF316A6NFI3 1004 aaPredicted RBP20.31■□□□□ 0.84
HLA-DMA-208ENST00000477541 GTF3C3Q9Y5Q9 886 aa20.24■□□□□ 0.83
HLA-DMA-208ENST00000477541 RUSC2Q8N2Y8 1516 aa20.23■□□□□ 0.83
HLA-DMA-208ENST00000477541 UBTFP17480 764 aaKnown RBP20.23■□□□□ 0.83
HLA-DMA-208ENST00000477541 LAMC3Q9Y6N6 1575 aa20.21■□□□□ 0.83
HLA-DMA-208ENST00000477541 VPS8Q8N3P4 1428 aa20.2■□□□□ 0.82
HLA-DMA-208ENST00000477541 SYNJ1O43426 1573 aa20.18■□□□□ 0.82
HLA-DMA-208ENST00000477541 CLIP1P30622 1438 aa20.16■□□□□ 0.82
HLA-DMA-208ENST00000477541 CLSPNQ9HAW4 1339 aa20.13■□□□□ 0.81
HLA-DMA-208ENST00000477541 PDS5BQ9NTI5 1447 aa20.12■□□□□ 0.81
HLA-DMA-208ENST00000477541 KIF21AQ7Z4S6 1674 aa20.11■□□□□ 0.81
HLA-DMA-208ENST00000477541 ERICH3Q5RHP9 1530 aa20.05■□□□□ 0.8
HLA-DMA-208ENST00000477541 TOP2BQ02880 1626 aa20.05■□□□□ 0.8
HLA-DMA-208ENST00000477541 BIVM-ERCC5R4GMW8 1640 aa20.03■□□□□ 0.8
HLA-DMA-208ENST00000477541 APLP2Q06481 763 aa20■□□□□ 0.79
HLA-DMA-208ENST00000477541 TTBK1Q5TCY1 1321 aaPredicted RBP20■□□□□ 0.79
HLA-DMA-208ENST00000477541 MRC2Q9UBG0 1479 aa19.98■□□□□ 0.79
HLA-DMA-208ENST00000477541 WDR62O43379 1518 aa19.97■□□□□ 0.79
HLA-DMA-208ENST00000477541 RAPGEF2Q9Y4G8 1499 aa19.96■□□□□ 0.79
HLA-DMA-208ENST00000477541 OSCARQ8IYS5 282 aa19.95■□□□□ 0.78
HLA-DMA-208ENST00000477541 HNRNPUL2Q1KMD3 747 aaKnown RBP19.89■□□□□ 0.77
HLA-DMA-208ENST00000477541 MIER1Q8N108 512 aa19.89■□□□□ 0.77
HLA-DMA-208ENST00000477541 CADPSQ9ULU8 1353 aa19.89■□□□□ 0.77
HLA-DMA-208ENST00000477541 PRXQ9BXM0 1461 aa19.89■□□□□ 0.77
HLA-DMA-208ENST00000477541 RRBP1Q9P2E9 1410 aaKnown RBP19.82■□□□□ 0.76
HLA-DMA-208ENST00000477541 DHX57Q6P158 1386 aaKnown RBP19.81■□□□□ 0.76
HLA-DMA-208ENST00000477541 ARAP1Q96P48 1450 aa19.81■□□□□ 0.76
HLA-DMA-208ENST00000477541 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
HLA-DMA-208ENST00000477541 RIMBP3CA6NJZ7 1639 aa19.75■□□□□ 0.75
HLA-DMA-208ENST00000477541 RIMBP3BA6NNM3 1639 aa19.75■□□□□ 0.75
HLA-DMA-208ENST00000477541 RIMBP3Q9UFD9 1639 aa19.75■□□□□ 0.75
HLA-DMA-208ENST00000477541 MAP3K1Q13233 1512 aa19.71■□□□□ 0.75
HLA-DMA-208ENST00000477541 KIF27Q86VH2 1401 aa19.7■□□□□ 0.74
HLA-DMA-208ENST00000477541 PRDM2Q13029 1718 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms