RNA–Protein interactions for RNA: ENST00000477523.1

RGPD5-209, Transcript of RANBP2-like and GRIP domain containing 5, humanhuman

TSL 1 (best)

Gene RGPD5, Length 6,902 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD5-209ENST00000477523 NISCHQ9Y2I1 1504 aa9.75□□□□□ -0.85
RGPD5-209ENST00000477523 DCAF8L2P0C7V8 631 aa8.47□□□□□ -1.05
RGPD5-209ENST00000477523 CCDC180Q9P1Z9 1646 aa8.33□□□□□ -1.08
RGPD5-209ENST00000477523 SHROOM4Q9ULL8 1493 aa8.21□□□□□ -1.09
RGPD5-209ENST00000477523 ZCCHC6Q5VYS8 1495 aaKnown RBP8.17□□□□□ -1.1
RGPD5-209ENST00000477523 ABCC9O60706 1549 aa8.15□□□□□ -1.1
RGPD5-209ENST00000477523 SUPT5HO00267 1087 aaKnown RBP8.01□□□□□ -1.13
RGPD5-209ENST00000477523 DCAF1Q9Y4B6 1507 aa8□□□□□ -1.13
RGPD5-209ENST00000477523 MYO15BQ96JP2 1530 aa7.89□□□□□ -1.15
RGPD5-209ENST00000477523 NACADO15069 1562 aa7.89□□□□□ -1.15
RGPD5-209ENST00000477523 RB1CC1Q8TDY2 1594 aa7.85□□□□□ -1.15
RGPD5-209ENST00000477523 SCRIBQ14160 1630 aa7.82□□□□□ -1.16
RGPD5-209ENST00000477523 PABPN1Q86U42 306 aaKnown RBP eCLIP7.78□□□□□ -1.16
RGPD5-209ENST00000477523 RSF1Q96T23 1441 aaPredicted RBP7.63□□□□□ -1.19
RGPD5-209ENST00000477523 CECR2Q9BXF3 1484 aa7.61□□□□□ -1.19
RGPD5-209ENST00000477523 BAZ1AQ9NRL2 1556 aaPredicted RBP7.56□□□□□ -1.2
RGPD5-209ENST00000477523 CHIC1Q5VXU3 224 aa7.55□□□□□ -1.2
RGPD5-209ENST00000477523 MROH2BQ7Z745 1585 aa7.53□□□□□ -1.2
RGPD5-209ENST00000477523 TRIM41Q8WV44 630 aa7.52□□□□□ -1.21
RGPD5-209ENST00000477523 BICRAQ9NZM4 1560 aa7.46□□□□□ -1.22
RGPD5-209ENST00000477523 BAZ1BQ9UIG0 1483 aaKnown RBP7.43□□□□□ -1.22
RGPD5-209ENST00000477523 FAM9AQ8IZU1 332 aaPredicted RBP7.43□□□□□ -1.22
RGPD5-209ENST00000477523 SMARCA4P51532 1647 aa7.43□□□□□ -1.22
RGPD5-209ENST00000477523 ATAD2BQ9ULI0 1458 aa7.41□□□□□ -1.22
RGPD5-209ENST00000477523 SMARCA2P51531 1590 aa7.4□□□□□ -1.23
RGPD5-209ENST00000477523 TOP2AP11388 1531 aaKnown RBP7.38□□□□□ -1.23
RGPD5-209ENST00000477523 WIZO95785 1651 aa7.38□□□□□ -1.23
RGPD5-209ENST00000477523 EHMT2Q96KQ7 1210 aa7.36□□□□□ -1.23
RGPD5-209ENST00000477523 CCDC88BA6NC98 1476 aa7.35□□□□□ -1.23
RGPD5-209ENST00000477523 EIF4G1Q04637 1599 aaKnown RBP7.34□□□□□ -1.23
RGPD5-209ENST00000477523 NCAPD3P42695 1498 aa7.34□□□□□ -1.23
RGPD5-209ENST00000477523 UNC13AQ9UPW8 1703 aa7.32□□□□□ -1.24
RGPD5-209ENST00000477523 PEG3Q9GZU2 1588 aa7.27□□□□□ -1.24
RGPD5-209ENST00000477523 LOC105371045A0A1W2PR82 267 aa7.27□□□□□ -1.24
RGPD5-209ENST00000477523 WRNQ14191 1432 aaPredicted RBP eCLIP7.27□□□□□ -1.25
RGPD5-209ENST00000477523 HMGXB3Q12766 1538 aa7.26□□□□□ -1.25
RGPD5-209ENST00000477523 UBTFP17480 764 aaKnown RBP7.24□□□□□ -1.25
RGPD5-209ENST00000477523 CADPSQ9ULU8 1353 aa7.23□□□□□ -1.25
RGPD5-209ENST00000477523 CSRNP3Q8WYN3 585 aa7.22□□□□□ -1.25
RGPD5-209ENST00000477523 CC2D2AQ9P2K1 1620 aa7.2□□□□□ -1.26
RGPD5-209ENST00000477523 EEA1Q15075 1411 aa7.18□□□□□ -1.26
RGPD5-209ENST00000477523 ABCC8Q09428 1581 aa7.18□□□□□ -1.26
RGPD5-209ENST00000477523 CFTRP13569 1480 aa7.17□□□□□ -1.26
RGPD5-209ENST00000477523 RANGAP1P46060 587 aaPredicted RBP7.16□□□□□ -1.26
RGPD5-209ENST00000477523 PDS5BQ9NTI5 1447 aa7.15□□□□□ -1.27
RGPD5-209ENST00000477523 APLP2Q06481 763 aa7.14□□□□□ -1.27
RGPD5-209ENST00000477523 SOGA1O94964 1423 aa7.13□□□□□ -1.27
RGPD5-209ENST00000477523 DNAJC5BQ9UF47 199 aa7.12□□□□□ -1.27
RGPD5-209ENST00000477523 FANCD2Q9BXW9 1451 aa7.12□□□□□ -1.27
RGPD5-209ENST00000477523 KIF27Q86VH2 1401 aa7.11□□□□□ -1.27
RGPD5-209ENST00000477523 CEP164Q9UPV0 1460 aa7.08□□□□□ -1.28
RGPD5-209ENST00000477523 NESP48681 1621 aa7.08□□□□□ -1.28
RGPD5-209ENST00000477523 GOLGA3Q08378 1498 aa7.07□□□□□ -1.28
RGPD5-209ENST00000477523 PCGF6Q9BYE7 350 aa7.07□□□□□ -1.28
RGPD5-209ENST00000477523 CUX2O14529 1486 aa7.07□□□□□ -1.28
RGPD5-209ENST00000477523 ERCC6Q03468 1493 aa7.06□□□□□ -1.28
RGPD5-209ENST00000477523 TNIKQ9UKE5 1360 aa7.06□□□□□ -1.28
RGPD5-209ENST00000477523 TTBK1Q5TCY1 1321 aaPredicted RBP7.05□□□□□ -1.28
RGPD5-209ENST00000477523 SYNJ1O43426 1573 aa7.05□□□□□ -1.28
RGPD5-209ENST00000477523 RUSC2Q8N2Y8 1516 aa7.04□□□□□ -1.28
RGPD5-209ENST00000477523 FGD5Q6ZNL6 1462 aa7.03□□□□□ -1.28
RGPD5-209ENST00000477523 CEP162Q5TB80 1403 aa7.02□□□□□ -1.29
RGPD5-209ENST00000477523 CUX1P39880 1505 aa7.02□□□□□ -1.29
RGPD5-209ENST00000477523 PPARGC1BQ86YN6 1023 aaKnown RBP7.02□□□□□ -1.29
RGPD5-209ENST00000477523 LAMC3Q9Y6N6 1575 aa7.02□□□□□ -1.29
RGPD5-209ENST00000477523 TOP2BQ02880 1626 aa7.02□□□□□ -1.29
RGPD5-209ENST00000477523 TRIM26Q12899 539 aaPredicted RBP7.01□□□□□ -1.29
RGPD5-209ENST00000477523 CLIP1P30622 1438 aa7.01□□□□□ -1.29
RGPD5-209ENST00000477523 TDRD9Q8NDG6 1382 aaKnown RBP7.01□□□□□ -1.29
RGPD5-209ENST00000477523 CARMIL1Q5VZK9 1371 aa7.01□□□□□ -1.29
RGPD5-209ENST00000477523 ATP1B4Q9UN42 357 aaPredicted RBP7□□□□□ -1.29
RGPD5-209ENST00000477523 TOPBP1Q92547 1522 aa6.99□□□□□ -1.29
RGPD5-209ENST00000477523 FBLN2P98095 1184 aa6.99□□□□□ -1.29
RGPD5-209ENST00000477523 RAD54L2Q9Y4B4 1467 aa6.98□□□□□ -1.29
RGPD5-209ENST00000477523 IGF1RP08069 1367 aa6.98□□□□□ -1.29
RGPD5-209ENST00000477523 POLA1P09884 1462 aaPredicted RBP6.97□□□□□ -1.29
RGPD5-209ENST00000477523 MRC2Q9UBG0 1479 aa6.97□□□□□ -1.29
RGPD5-209ENST00000477523 DNMBPQ6XZF7 1577 aa6.97□□□□□ -1.29
RGPD5-209ENST00000477523 RAPGEF2Q9Y4G8 1499 aa6.97□□□□□ -1.29
RGPD5-209ENST00000477523 P3H3Q8IVL6 736 aa6.95□□□□□ -1.3
RGPD5-209ENST00000477523 CHMP7Q8WUX9 453 aaPredicted RBP6.94□□□□□ -1.3
RGPD5-209ENST00000477523 URB2Q14146 1524 aaKnown RBP6.94□□□□□ -1.3
RGPD5-209ENST00000477523 PRXQ9BXM0 1461 aa6.94□□□□□ -1.3
RGPD5-209ENST00000477523 ABCA10Q8WWZ4 1543 aa6.93□□□□□ -1.3
RGPD5-209ENST00000477523 BIVM-ERCC5R4GMW8 1640 aa6.93□□□□□ -1.3
RGPD5-209ENST00000477523 GAPVD1Q14C86 1478 aa6.92□□□□□ -1.3
RGPD5-209ENST00000477523 IFT140Q96RY7 1462 aa6.91□□□□□ -1.3
RGPD5-209ENST00000477523 ERICH3Q5RHP9 1530 aa6.9□□□□□ -1.3
RGPD5-209ENST00000477523 KIF21BO75037 1637 aa6.9□□□□□ -1.3
RGPD5-209ENST00000477523 AQRO60306 1485 aaKnown RBP eCLIP6.9□□□□□ -1.3
RGPD5-209ENST00000477523 VPS8Q8N3P4 1428 aa6.9□□□□□ -1.3
RGPD5-209ENST00000477523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.89□□□□□ -1.31
RGPD5-209ENST00000477523 HNRNPUL2Q1KMD3 747 aaKnown RBP6.89□□□□□ -1.31
RGPD5-209ENST00000477523 GRIN2BQ13224 1484 aa6.88□□□□□ -1.31
RGPD5-209ENST00000477523 FHAD1B1AJZ9 1412 aa6.87□□□□□ -1.31
RGPD5-209ENST00000477523 CCER1Q8TC90 406 aaPredicted RBP6.84□□□□□ -1.31
RGPD5-209ENST00000477523 ARID3CA6NKF2 412 aa6.83□□□□□ -1.32
RGPD5-209ENST00000477523 ZEB1P37275 1124 aaPredicted RBP6.83□□□□□ -1.32
RGPD5-209ENST00000477523 ITGAEP38570 1179 aa6.83□□□□□ -1.32
RGPD5-209ENST00000477523 ZNF608Q9ULD9 1512 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms