RNA–Protein interactions for RNA: ENST00000476142.1

CCDC66-216, Transcript of coiled-coil domain containing 66, humanhuman

TSL 2

Gene CCDC66, Length 2,783 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-216ENST00000476142 NISCHQ9Y2I1 1504 aa18.97■□□□□ 0.63
CCDC66-216ENST00000476142 CCDC180Q9P1Z9 1646 aa16.2■□□□□ 0.18
CCDC66-216ENST00000476142 SHROOM4Q9ULL8 1493 aa16.11■□□□□ 0.17
CCDC66-216ENST00000476142 ZCCHC6Q5VYS8 1495 aaKnown RBP16■□□□□ 0.15
CCDC66-216ENST00000476142 DCAF8L2P0C7V8 631 aa15.91■□□□□ 0.14
CCDC66-216ENST00000476142 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
CCDC66-216ENST00000476142 DCAF1Q9Y4B6 1507 aa15.54■□□□□ 0.08
CCDC66-216ENST00000476142 ABCC9O60706 1549 aa15.26■□□□□ 0.03
CCDC66-216ENST00000476142 SCRIBQ14160 1630 aa15.21■□□□□ 0.03
CCDC66-216ENST00000476142 MYO15BQ96JP2 1530 aa15.16■□□□□ 0.02
CCDC66-216ENST00000476142 CHIC1Q5VXU3 224 aa15.12■□□□□ 0.01
CCDC66-216ENST00000476142 NACADO15069 1562 aa15.05■□□□□ 0
CCDC66-216ENST00000476142 RSF1Q96T23 1441 aaPredicted RBP14.95□□□□□ -0.02
CCDC66-216ENST00000476142 RB1CC1Q8TDY2 1594 aa14.87□□□□□ -0.03
CCDC66-216ENST00000476142 CECR2Q9BXF3 1484 aa14.82□□□□□ -0.04
CCDC66-216ENST00000476142 MROH2BQ7Z745 1585 aa14.74□□□□□ -0.05
CCDC66-216ENST00000476142 LOC105371045A0A1W2PR82 267 aa14.68□□□□□ -0.06
CCDC66-216ENST00000476142 WIZO95785 1651 aa14.64□□□□□ -0.07
CCDC66-216ENST00000476142 TRIM41Q8WV44 630 aa14.64□□□□□ -0.07
CCDC66-216ENST00000476142 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
CCDC66-216ENST00000476142 PABPN1Q86U42 306 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC66-216ENST00000476142 UNC13AQ9UPW8 1703 aa14.56□□□□□ -0.08
CCDC66-216ENST00000476142 FAM9AQ8IZU1 332 aaPredicted RBP14.54□□□□□ -0.08
CCDC66-216ENST00000476142 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
CCDC66-216ENST00000476142 PCGF6Q9BYE7 350 aa14.48□□□□□ -0.09
CCDC66-216ENST00000476142 EHMT2Q96KQ7 1210 aa14.45□□□□□ -0.1
CCDC66-216ENST00000476142 TOP2AP11388 1531 aaKnown RBP14.43□□□□□ -0.1
CCDC66-216ENST00000476142 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
CCDC66-216ENST00000476142 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
CCDC66-216ENST00000476142 SMARCA2P51531 1590 aa14.33□□□□□ -0.12
CCDC66-216ENST00000476142 EIF4G1Q04637 1599 aaKnown RBP14.32□□□□□ -0.12
CCDC66-216ENST00000476142 HRCP23327 699 aa14.3□□□□□ -0.12
CCDC66-216ENST00000476142 ABCC8Q09428 1581 aa14.27□□□□□ -0.13
CCDC66-216ENST00000476142 TRIM26Q12899 539 aaPredicted RBP14.23□□□□□ -0.13
CCDC66-216ENST00000476142 PEG3Q9GZU2 1588 aa14.19□□□□□ -0.14
CCDC66-216ENST00000476142 ATAD2BQ9ULI0 1458 aa14.18□□□□□ -0.14
CCDC66-216ENST00000476142 BAZ1BQ9UIG0 1483 aaKnown RBP14.16□□□□□ -0.14
CCDC66-216ENST00000476142 SOGA1O94964 1423 aa14.1□□□□□ -0.15
CCDC66-216ENST00000476142 PPARGC1BQ86YN6 1023 aaKnown RBP14.08□□□□□ -0.16
CCDC66-216ENST00000476142 WRNQ14191 1432 aaPredicted RBP eCLIP14.07□□□□□ -0.16
CCDC66-216ENST00000476142 RUSC2Q8N2Y8 1516 aa14.02□□□□□ -0.16
CCDC66-216ENST00000476142 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.16
CCDC66-216ENST00000476142 UBTFP17480 764 aaKnown RBP14□□□□□ -0.17
CCDC66-216ENST00000476142 EEA1Q15075 1411 aa13.99□□□□□ -0.17
CCDC66-216ENST00000476142 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
CCDC66-216ENST00000476142 CEP162Q5TB80 1403 aa13.95□□□□□ -0.18
CCDC66-216ENST00000476142 TTBK1Q5TCY1 1321 aaPredicted RBP13.93□□□□□ -0.18
CCDC66-216ENST00000476142 NCAPD3P42695 1498 aa13.93□□□□□ -0.18
CCDC66-216ENST00000476142 TNIKQ9UKE5 1360 aa13.93□□□□□ -0.18
CCDC66-216ENST00000476142 HMGXB3Q12766 1538 aa13.91□□□□□ -0.18
CCDC66-216ENST00000476142 GOLGA3Q08378 1498 aa13.9□□□□□ -0.18
CCDC66-216ENST00000476142 CEP164Q9UPV0 1460 aa13.84□□□□□ -0.19
CCDC66-216ENST00000476142 ZEB1P37275 1124 aaPredicted RBP13.83□□□□□ -0.2
CCDC66-216ENST00000476142 TOP2BQ02880 1626 aa13.81□□□□□ -0.2
CCDC66-216ENST00000476142 RANGAP1P46060 587 aaPredicted RBP13.81□□□□□ -0.2
CCDC66-216ENST00000476142 KIF21BO75037 1637 aa13.78□□□□□ -0.2
CCDC66-216ENST00000476142 RAPGEF2Q9Y4G8 1499 aa13.77□□□□□ -0.21
CCDC66-216ENST00000476142 CFTRP13569 1480 aa13.77□□□□□ -0.21
CCDC66-216ENST00000476142 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
CCDC66-216ENST00000476142 CLIP1P30622 1438 aa13.75□□□□□ -0.21
CCDC66-216ENST00000476142 CUX1P39880 1505 aa13.74□□□□□ -0.21
CCDC66-216ENST00000476142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.73□□□□□ -0.21
CCDC66-216ENST00000476142 CCER1Q8TC90 406 aaPredicted RBP13.71□□□□□ -0.22
CCDC66-216ENST00000476142 CC2D2AQ9P2K1 1620 aa13.7□□□□□ -0.22
CCDC66-216ENST00000476142 CADPSQ9ULU8 1353 aa13.68□□□□□ -0.22
CCDC66-216ENST00000476142 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
CCDC66-216ENST00000476142 APLP2Q06481 763 aa13.66□□□□□ -0.22
CCDC66-216ENST00000476142 DNAJC5Q9H3Z4 198 aa13.65□□□□□ -0.22
CCDC66-216ENST00000476142 AEBP2Q6ZN18 517 aaPredicted RBP13.64□□□□□ -0.23
CCDC66-216ENST00000476142 VPS8Q8N3P4 1428 aa13.64□□□□□ -0.23
CCDC66-216ENST00000476142 PRXQ9BXM0 1461 aa13.63□□□□□ -0.23
CCDC66-216ENST00000476142 ERICH3Q5RHP9 1530 aa13.6□□□□□ -0.23
CCDC66-216ENST00000476142 PRDM2Q13029 1718 aa13.58□□□□□ -0.23
CCDC66-216ENST00000476142 CUX2O14529 1486 aa13.58□□□□□ -0.24
CCDC66-216ENST00000476142 DNAJC5BQ9UF47 199 aa13.56□□□□□ -0.24
CCDC66-216ENST00000476142 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
CCDC66-216ENST00000476142 FGD5Q6ZNL6 1462 aa13.55□□□□□ -0.24
CCDC66-216ENST00000476142 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
CCDC66-216ENST00000476142 ARAP1Q96P48 1450 aa13.52□□□□□ -0.25
CCDC66-216ENST00000476142 NESP48681 1621 aa13.52□□□□□ -0.25
CCDC66-216ENST00000476142 IGF1RP08069 1367 aa13.51□□□□□ -0.25
CCDC66-216ENST00000476142 CARMIL1Q5VZK9 1371 aa13.47□□□□□ -0.25
CCDC66-216ENST00000476142 RAD54L2Q9Y4B4 1467 aa13.45□□□□□ -0.26
CCDC66-216ENST00000476142 KANK4Q5T7N3 995 aaPredicted RBP13.44□□□□□ -0.26
CCDC66-216ENST00000476142 ARHGAP35Q9NRY4 1499 aa13.44□□□□□ -0.26
CCDC66-216ENST00000476142 DNMBPQ6XZF7 1577 aa13.43□□□□□ -0.26
CCDC66-216ENST00000476142 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
CCDC66-216ENST00000476142 POLA1P09884 1462 aaPredicted RBP13.41□□□□□ -0.26
CCDC66-216ENST00000476142 P3H3Q8IVL6 736 aa13.37□□□□□ -0.27
CCDC66-216ENST00000476142 ABCA10Q8WWZ4 1543 aa13.36□□□□□ -0.27
CCDC66-216ENST00000476142 LAMC3Q9Y6N6 1575 aa13.36□□□□□ -0.27
CCDC66-216ENST00000476142 URB2Q14146 1524 aaKnown RBP13.35□□□□□ -0.27
CCDC66-216ENST00000476142 ATP1B4Q9UN42 357 aaPredicted RBP13.34□□□□□ -0.27
CCDC66-216ENST00000476142 PDS5BQ9NTI5 1447 aa13.33□□□□□ -0.28
CCDC66-216ENST00000476142 TDRD9Q8NDG6 1382 aaKnown RBP13.31□□□□□ -0.28
CCDC66-216ENST00000476142 ITGAEP38570 1179 aa13.31□□□□□ -0.28
CCDC66-216ENST00000476142 DIEXFQ68CQ4 756 aaKnown RBP13.28□□□□□ -0.28
CCDC66-216ENST00000476142 FHOD3Q2V2M9 1422 aa13.27□□□□□ -0.29
CCDC66-216ENST00000476142 CCNB3Q8WWL7 1395 aa13.27□□□□□ -0.29
CCDC66-216ENST00000476142 RRBP1Q9P2E9 1410 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms