RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	AEBP2	Q6ZN18	517 aa	Predicted RBP	24.2	■■□□□ 1.46
HDAC9-223	ENST00000476135	CHIC1	Q5VXU3	224 aa		23.04	■■□□□ 1.28
HDAC9-223	ENST00000476135	SENP3	Q9H4L4	574 aa	Predicted RBP	20.59	■□□□□ 0.89
HDAC9-223	ENST00000476135	PHF23	Q9BUL5	403 aa	Predicted RBP	20.35	■□□□□ 0.85
HDAC9-223	ENST00000476135	FOXD1	Q16676	465 aa		19.21	■□□□□ 0.67
HDAC9-223	ENST00000476135	NISCH	Q9Y2I1	1504 aa		18.79	■□□□□ 0.6
HDAC9-223	ENST00000476135	PLPPR3	Q6T4P5	718 aa		18.44	■□□□□ 0.54
HDAC9-223	ENST00000476135	PPP6R1	Q9UPN7	881 aa		18.04	■□□□□ 0.48
HDAC9-223	ENST00000476135	ADRA2B	P18089	450 aa		17.98	■□□□□ 0.47
HDAC9-223	ENST00000476135	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.96	■□□□□ 0.47
HDAC9-223	ENST00000476135	MSH5	O43196	834 aa		17.91	■□□□□ 0.46
HDAC9-223	ENST00000476135	ABCC9	O60706	1549 aa		17.72	■□□□□ 0.43
HDAC9-223	ENST00000476135	POTED	Q86YR6	584 aa		17.36	■□□□□ 0.37
HDAC9-223	ENST00000476135	DNAJC5B	Q9UF47	199 aa		17.21	■□□□□ 0.35
HDAC9-223	ENST00000476135	CCDC180	Q9P1Z9	1646 aa		17.18	■□□□□ 0.34
HDAC9-223	ENST00000476135	RB1CC1	Q8TDY2	1594 aa		16.65	■□□□□ 0.26
HDAC9-223	ENST00000476135	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.49	■□□□□ 0.23
HDAC9-223	ENST00000476135	SCAF1	Q9H7N4	1312 aa	Known RBP	16.41	■□□□□ 0.22
HDAC9-223	ENST00000476135	NACAD	O15069	1562 aa		16.39	■□□□□ 0.21
HDAC9-223	ENST00000476135	PABPN1	Q86U42	306 aa	Known RBP eCLIP	16.39	■□□□□ 0.21
HDAC9-223	ENST00000476135	DMRT2	Q9Y5R5	561 aa		16.36	■□□□□ 0.21
HDAC9-223	ENST00000476135	DNAJC5	Q9H3Z4	198 aa		16.31	■□□□□ 0.2
HDAC9-223	ENST00000476135	UNC13A	Q9UPW8	1703 aa		16.27	■□□□□ 0.19
HDAC9-223	ENST00000476135	BICRA	Q9NZM4	1560 aa		16.18	■□□□□ 0.18
HDAC9-223	ENST00000476135	PPP4R3CP	Q6ZMV5	832 aa		16.18	■□□□□ 0.18
HDAC9-223	ENST00000476135	DCAF8L2	P0C7V8	631 aa		16.07	■□□□□ 0.16
HDAC9-223	ENST00000476135	CECR2	Q9BXF3	1484 aa		16.06	■□□□□ 0.16
HDAC9-223	ENST00000476135	CC2D2A	Q9P2K1	1620 aa		16.01	■□□□□ 0.15
HDAC9-223	ENST00000476135	MYO15B	Q96JP2	1530 aa		15.98	■□□□□ 0.15
HDAC9-223	ENST00000476135	SHROOM4	Q9ULL8	1493 aa		15.95	■□□□□ 0.14
HDAC9-223	ENST00000476135	CNKSR2	Q8WXI2	1034 aa		15.85	■□□□□ 0.13
HDAC9-223	ENST00000476135	EIF4G1	Q04637	1599 aa	Known RBP	15.83	■□□□□ 0.12
HDAC9-223	ENST00000476135	HOXD11	P31277	338 aa	Predicted RBP	15.79	■□□□□ 0.12
HDAC9-223	ENST00000476135	RNF216	Q9NWF9	866 aa	Predicted RBP	15.68	■□□□□ 0.1
HDAC9-223	ENST00000476135	DCAF8L1	A6NGE4	600 aa		15.67	■□□□□ 0.1
HDAC9-223	ENST00000476135	CUX2	O14529	1486 aa		15.6	■□□□□ 0.09
HDAC9-223	ENST00000476135	NCBP3	Q53F19	620 aa	Known RBP	15.56	■□□□□ 0.08
HDAC9-223	ENST00000476135	SCRIB	Q14160	1630 aa		15.54	■□□□□ 0.08
HDAC9-223	ENST00000476135	DCAF1	Q9Y4B6	1507 aa		15.53	■□□□□ 0.08
HDAC9-223	ENST00000476135	ZCCHC6	Q5VYS8	1495 aa	Known RBP	15.44	■□□□□ 0.06
HDAC9-223	ENST00000476135	NPM3	O75607	178 aa	Known RBP	15.37	■□□□□ 0.05
HDAC9-223	ENST00000476135	ERCC6	Q03468	1493 aa		15.37	■□□□□ 0.05
HDAC9-223	ENST00000476135	CACNB1	Q02641	598 aa	Predicted RBP	15.33	■□□□□ 0.04
HDAC9-223	ENST00000476135	RNF39	Q9H2S5	420 aa		15.31	■□□□□ 0.04
HDAC9-223	ENST00000476135	TRIM41	Q8WV44	630 aa		15.26	■□□□□ 0.03
HDAC9-223	ENST00000476135	KCNA4	P22459	653 aa		15.16	■□□□□ 0.02
HDAC9-223	ENST00000476135	NCAPD3	P42695	1498 aa		15.14	■□□□□ 0.01
HDAC9-223	ENST00000476135	C1QBP	Q07021	282 aa	Known RBP	15.08	■□□□□ 0
HDAC9-223	ENST00000476135	THOC2	Q8NI27	1593 aa	Known RBP	15.06	■□□□□ 0
HDAC9-223	ENST00000476135	NES	P48681	1621 aa		15.05	■□□□□ -0
HDAC9-223	ENST00000476135	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	15.03	■□□□□ -0
HDAC9-223	ENST00000476135	ATAD2B	Q9ULI0	1458 aa		14.97	□□□□□ -0.01
HDAC9-223	ENST00000476135	HMGXB3	Q12766	1538 aa		14.96	□□□□□ -0.02
HDAC9-223	ENST00000476135	SMARCA2	P51531	1590 aa		14.92	□□□□□ -0.02
HDAC9-223	ENST00000476135	LAMC3	Q9Y6N6	1575 aa		14.9	□□□□□ -0.02
HDAC9-223	ENST00000476135	KIF21A	Q7Z4S6	1674 aa		14.86	□□□□□ -0.03
HDAC9-223	ENST00000476135	PDS5B	Q9NTI5	1447 aa		14.83	□□□□□ -0.04
HDAC9-223	ENST00000476135	SMARCA4	P51532	1647 aa		14.8	□□□□□ -0.04
HDAC9-223	ENST00000476135	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	14.79	□□□□□ -0.04
HDAC9-223	ENST00000476135	BAZ1B	Q9UIG0	1483 aa	Known RBP	14.78	□□□□□ -0.04
HDAC9-223	ENST00000476135	OSCAR	Q8IYS5	282 aa		14.76	□□□□□ -0.05
HDAC9-223	ENST00000476135		U3KPZ7	1027 aa	Predicted RBP	14.75	□□□□□ -0.05
HDAC9-223	ENST00000476135	MRC2	Q9UBG0	1479 aa		14.72	□□□□□ -0.05
HDAC9-223	ENST00000476135	WDR62	O43379	1518 aa		14.71	□□□□□ -0.05
HDAC9-223	ENST00000476135	PEG3	Q9GZU2	1588 aa		14.69	□□□□□ -0.06
HDAC9-223	ENST00000476135	SLC4A2	P04920	1241 aa		14.67	□□□□□ -0.06
HDAC9-223	ENST00000476135	RIMBP3C	A6NJZ7	1639 aa		14.64	□□□□□ -0.07
HDAC9-223	ENST00000476135	RIMBP3B	A6NNM3	1639 aa		14.64	□□□□□ -0.07
HDAC9-223	ENST00000476135	RIMBP3	Q9UFD9	1639 aa		14.64	□□□□□ -0.07
HDAC9-223	ENST00000476135	CADPS	Q9ULU8	1353 aa		14.62	□□□□□ -0.07
HDAC9-223	ENST00000476135	CEP164	Q9UPV0	1460 aa		14.53	□□□□□ -0.08
HDAC9-223	ENST00000476135	ARHGEF11	O15085	1522 aa		14.52	□□□□□ -0.08
HDAC9-223	ENST00000476135	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.51	□□□□□ -0.09
HDAC9-223	ENST00000476135	TRH	P20396	242 aa	Predicted RBP	14.47	□□□□□ -0.09
HDAC9-223	ENST00000476135	CAPN15	O75808	1086 aa		14.46	□□□□□ -0.09
HDAC9-223	ENST00000476135	MROH2B	Q7Z745	1585 aa		14.46	□□□□□ -0.09
HDAC9-223	ENST00000476135	FANCD2	Q9BXW9	1451 aa		14.45	□□□□□ -0.1
HDAC9-223	ENST00000476135	CYB5RL	Q6IPT4	315 aa		14.43	□□□□□ -0.1
HDAC9-223	ENST00000476135	URB2	Q14146	1524 aa	Known RBP	14.37	□□□□□ -0.11
HDAC9-223	ENST00000476135	DSG3	P32926	999 aa		14.36	□□□□□ -0.11
HDAC9-223	ENST00000476135	CFTR	P13569	1480 aa		14.33	□□□□□ -0.12
HDAC9-223	ENST00000476135	ARAP1	Q96P48	1450 aa		14.32	□□□□□ -0.12
HDAC9-223	ENST00000476135	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.31	□□□□□ -0.12
HDAC9-223	ENST00000476135	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.31	□□□□□ -0.12
HDAC9-223	ENST00000476135	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.31	□□□□□ -0.12
HDAC9-223	ENST00000476135	APLP2	Q06481	763 aa		14.3	□□□□□ -0.12
HDAC9-223	ENST00000476135	ZNF608	Q9ULD9	1512 aa	Predicted RBP	14.28	□□□□□ -0.12
HDAC9-223	ENST00000476135	IFT140	Q96RY7	1462 aa		14.27	□□□□□ -0.12
HDAC9-223	ENST00000476135	WIZ	O95785	1651 aa		14.26	□□□□□ -0.13
HDAC9-223	ENST00000476135	SAMD1	Q6SPF0	538 aa	Predicted RBP	14.25	□□□□□ -0.13
HDAC9-223	ENST00000476135	RSF1	Q96T23	1441 aa	Predicted RBP	14.24	□□□□□ -0.13
HDAC9-223	ENST00000476135	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.21	□□□□□ -0.13
HDAC9-223	ENST00000476135	CHD1	O14646	1710 aa		14.21	□□□□□ -0.14
HDAC9-223	ENST00000476135	MYCN	P04198	464 aa	Predicted RBP	14.19	□□□□□ -0.14
HDAC9-223	ENST00000476135	EIF4G3	O43432	1585 aa	Known RBP	14.18	□□□□□ -0.14
HDAC9-223	ENST00000476135	PRDM2	Q13029	1718 aa		14.16	□□□□□ -0.14
HDAC9-223	ENST00000476135	ABCB7	O75027	752 aa		14.16	□□□□□ -0.14
HDAC9-223	ENST00000476135	TOPBP1	Q92547	1522 aa		14.11	□□□□□ -0.15
HDAC9-223	ENST00000476135	FOXD4L1	Q9NU39	408 aa		14.1	□□□□□ -0.15
HDAC9-223	ENST00000476135	FBLN2	P98095	1184 aa		14.09	□□□□□ -0.15

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