RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 AEBP2Q6ZN18 517 aaPredicted RBP19.39■□□□□ 0.69
SHQ1-207ENST00000475558 CHIC1Q5VXU3 224 aa18.25■□□□□ 0.51
SHQ1-207ENST00000475558 SENP3Q9H4L4 574 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-207ENST00000475558 NISCHQ9Y2I1 1504 aa16.48■□□□□ 0.23
SHQ1-207ENST00000475558 PHF23Q9BUL5 403 aaPredicted RBP16.39■□□□□ 0.21
SHQ1-207ENST00000475558 FOXD1Q16676 465 aa15.5■□□□□ 0.07
SHQ1-207ENST00000475558 ABCC9O60706 1549 aa15.07■□□□□ 0
SHQ1-207ENST00000475558 CCDC180Q9P1Z9 1646 aa14.87□□□□□ -0.03
SHQ1-207ENST00000475558 MSH5O43196 834 aa14.64□□□□□ -0.07
SHQ1-207ENST00000475558 POTEDQ86YR6 584 aa14.61□□□□□ -0.07
SHQ1-207ENST00000475558 PLPPR3Q6T4P5 718 aa14.53□□□□□ -0.08
SHQ1-207ENST00000475558 PIAS4Q8N2W9 510 aaPredicted RBP14.5□□□□□ -0.09
SHQ1-207ENST00000475558 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
SHQ1-207ENST00000475558 PPP6R1Q9UPN7 881 aa14.32□□□□□ -0.12
SHQ1-207ENST00000475558 ADRA2BP18089 450 aa14.29□□□□□ -0.12
SHQ1-207ENST00000475558 RB1CC1Q8TDY2 1594 aa14.27□□□□□ -0.12
SHQ1-207ENST00000475558 NACADO15069 1562 aa14.13□□□□□ -0.15
SHQ1-207ENST00000475558 DCAF8L2P0C7V8 631 aa14.04□□□□□ -0.16
SHQ1-207ENST00000475558 PABPN1Q86U42 306 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHQ1-207ENST00000475558 UNC13AQ9UPW8 1703 aa13.9□□□□□ -0.18
SHQ1-207ENST00000475558 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
SHQ1-207ENST00000475558 BICRAQ9NZM4 1560 aa13.83□□□□□ -0.2
SHQ1-207ENST00000475558 SHROOM4Q9ULL8 1493 aa13.67□□□□□ -0.22
SHQ1-207ENST00000475558 DCAF1Q9Y4B6 1507 aa13.61□□□□□ -0.23
SHQ1-207ENST00000475558 CECR2Q9BXF3 1484 aa13.61□□□□□ -0.23
SHQ1-207ENST00000475558 CC2D2AQ9P2K1 1620 aa13.6□□□□□ -0.23
SHQ1-207ENST00000475558 ZCCHC6Q5VYS8 1495 aaKnown RBP13.59□□□□□ -0.23
SHQ1-207ENST00000475558 EIF4G1Q04637 1599 aaKnown RBP13.52□□□□□ -0.25
SHQ1-207ENST00000475558 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
SHQ1-207ENST00000475558 DNAJC5Q9H3Z4 198 aa13.36□□□□□ -0.27
SHQ1-207ENST00000475558 MAPK8IP2Q13387 824 aaPredicted RBP13.18□□□□□ -0.3
SHQ1-207ENST00000475558 SCAF1Q9H7N4 1312 aaKnown RBP13.15□□□□□ -0.3
SHQ1-207ENST00000475558 DMRT2Q9Y5R5 561 aa13.14□□□□□ -0.31
SHQ1-207ENST00000475558 CUX2O14529 1486 aa13.1□□□□□ -0.31
SHQ1-207ENST00000475558 NCAPD3P42695 1498 aa13.05□□□□□ -0.32
SHQ1-207ENST00000475558 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
SHQ1-207ENST00000475558 ATAD2BQ9ULI0 1458 aa12.96□□□□□ -0.34
SHQ1-207ENST00000475558 SMARCA2P51531 1590 aa12.93□□□□□ -0.34
SHQ1-207ENST00000475558 HMGXB3Q12766 1538 aa12.91□□□□□ -0.34
SHQ1-207ENST00000475558 SMARCA4P51532 1647 aa12.88□□□□□ -0.35
SHQ1-207ENST00000475558 NESP48681 1621 aa12.87□□□□□ -0.35
SHQ1-207ENST00000475558 BAZ1BQ9UIG0 1483 aaKnown RBP12.83□□□□□ -0.36
SHQ1-207ENST00000475558 BAZ1AQ9NRL2 1556 aaPredicted RBP12.81□□□□□ -0.36
SHQ1-207ENST00000475558 LAMC3Q9Y6N6 1575 aa12.78□□□□□ -0.36
SHQ1-207ENST00000475558 THOC2Q8NI27 1593 aaKnown RBP12.77□□□□□ -0.37
SHQ1-207ENST00000475558 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.37
SHQ1-207ENST00000475558 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
SHQ1-207ENST00000475558 DCAF8L1A6NGE4 600 aa12.73□□□□□ -0.37
SHQ1-207ENST00000475558 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
SHQ1-207ENST00000475558 PPP4R3CPQ6ZMV5 832 aa12.7□□□□□ -0.38
SHQ1-207ENST00000475558 KIF21AQ7Z4S6 1674 aa12.68□□□□□ -0.38
SHQ1-207ENST00000475558 MROH2BQ7Z745 1585 aa12.68□□□□□ -0.38
SHQ1-207ENST00000475558 TRIM41Q8WV44 630 aa12.66□□□□□ -0.38
SHQ1-207ENST00000475558 CADPSQ9ULU8 1353 aa12.65□□□□□ -0.38
SHQ1-207ENST00000475558 MRC2Q9UBG0 1479 aa12.61□□□□□ -0.39
SHQ1-207ENST00000475558 WDR62O43379 1518 aa12.57□□□□□ -0.4
SHQ1-207ENST00000475558 HOXD11P31277 338 aaPredicted RBP12.56□□□□□ -0.4
SHQ1-207ENST00000475558 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
SHQ1-207ENST00000475558 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
SHQ1-207ENST00000475558 CNKSR2Q8WXI2 1034 aa12.51□□□□□ -0.41
SHQ1-207ENST00000475558 WIZO95785 1651 aa12.5□□□□□ -0.41
SHQ1-207ENST00000475558 FANCD2Q9BXW9 1451 aa12.49□□□□□ -0.41
SHQ1-207ENST00000475558 CFTRP13569 1480 aa12.45□□□□□ -0.42
SHQ1-207ENST00000475558 RNF216Q9NWF9 866 aaPredicted RBP12.44□□□□□ -0.42
SHQ1-207ENST00000475558 RNF39Q9H2S5 420 aa12.43□□□□□ -0.42
SHQ1-207ENST00000475558 URB2Q14146 1524 aaKnown RBP12.38□□□□□ -0.43
SHQ1-207ENST00000475558 RSF1Q96T23 1441 aaPredicted RBP12.36□□□□□ -0.43
SHQ1-207ENST00000475558 TOP2AP11388 1531 aaKnown RBP12.35□□□□□ -0.43
SHQ1-207ENST00000475558 RIMBP3CA6NJZ7 1639 aa12.29□□□□□ -0.44
SHQ1-207ENST00000475558 RIMBP3BA6NNM3 1639 aa12.29□□□□□ -0.44
SHQ1-207ENST00000475558 RIMBP3Q9UFD9 1639 aa12.29□□□□□ -0.44
SHQ1-207ENST00000475558 IFT140Q96RY7 1462 aa12.29□□□□□ -0.44
SHQ1-207ENST00000475558 PRDM2Q13029 1718 aa12.28□□□□□ -0.44
SHQ1-207ENST00000475558 SUPT5HO00267 1087 aaKnown RBP12.27□□□□□ -0.45
SHQ1-207ENST00000475558 C1QBPQ07021 282 aaKnown RBP12.27□□□□□ -0.45
SHQ1-207ENST00000475558 ZNF608Q9ULD9 1512 aaPredicted RBP12.26□□□□□ -0.45
SHQ1-207ENST00000475558 ARHGEF11O15085 1522 aa12.24□□□□□ -0.45
SHQ1-207ENST00000475558 ABCC8Q09428 1581 aa12.23□□□□□ -0.45
SHQ1-207ENST00000475558 CCDC88BA6NC98 1476 aa12.22□□□□□ -0.45
SHQ1-207ENST00000475558 TOPBP1Q92547 1522 aa12.21□□□□□ -0.45
SHQ1-207ENST00000475558 CYB5RLQ6IPT4 315 aa12.21□□□□□ -0.45
SHQ1-207ENST00000475558 NCBP3Q53F19 620 aaKnown RBP12.2□□□□□ -0.46
SHQ1-207ENST00000475558 EIF4G3O43432 1585 aaKnown RBP12.17□□□□□ -0.46
SHQ1-207ENST00000475558 DNMBPQ6XZF7 1577 aa12.15□□□□□ -0.46
SHQ1-207ENST00000475558 TRHP20396 242 aaPredicted RBP12.15□□□□□ -0.46
SHQ1-207ENST00000475558 FBLN2P98095 1184 aa12.14□□□□□ -0.47
SHQ1-207ENST00000475558 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.47
SHQ1-207ENST00000475558 TARBP1Q13395 1621 aaKnown RBP12.11□□□□□ -0.47
SHQ1-207ENST00000475558 CHD1O14646 1710 aa12.11□□□□□ -0.47
SHQ1-207ENST00000475558 ARAP1Q96P48 1450 aa12.1□□□□□ -0.47
SHQ1-207ENST00000475558 POLA1P09884 1462 aaPredicted RBP12.08□□□□□ -0.48
SHQ1-207ENST00000475558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.06□□□□□ -0.482e-6■■■■□ 20.7
SHQ1-207ENST00000475558 SOGA1O94964 1423 aa12.05□□□□□ -0.48
SHQ1-207ENST00000475558 TDRD9Q8NDG6 1382 aaKnown RBP12.04□□□□□ -0.48
SHQ1-207ENST00000475558 RAD54L2Q9Y4B4 1467 aa12.03□□□□□ -0.48
SHQ1-207ENST00000475558 CHMP7Q8WUX9 453 aaPredicted RBP12.03□□□□□ -0.48
SHQ1-207ENST00000475558 WDR97A6NE52 1622 aa12.01□□□□□ -0.49
SHQ1-207ENST00000475558 SNAPC4Q5SXM2 1469 aa12□□□□□ -0.49
SHQ1-207ENST00000475558 SYNJ1O43426 1573 aa11.99□□□□□ -0.49
SHQ1-207ENST00000475558 CLASP1Q7Z460 1538 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms