RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 DNAJC5BQ9UF47 199 aa16.28■□□□□ 0.2
CCDC93-208ENST00000474546 DNAJC5Q9H3Z4 198 aa16.1■□□□□ 0.17
CCDC93-208ENST00000474546 ABCC9O60706 1549 aa16.07■□□□□ 0.16
CCDC93-208ENST00000474546 NISCHQ9Y2I1 1504 aa15.78■□□□□ 0.12
CCDC93-208ENST00000474546 CCDC180Q9P1Z9 1646 aa14.85□□□□□ -0.03
CCDC93-208ENST00000474546 RB1CC1Q8TDY2 1594 aa14.8□□□□□ -0.04
CCDC93-208ENST00000474546 TRIM41Q8WV44 630 aa14.73□□□□□ -0.05
CCDC93-208ENST00000474546 PABPN1Q86U42 306 aaKnown RBP eCLIP14.7□□□□□ -0.06
CCDC93-208ENST00000474546 CECR2Q9BXF3 1484 aa14.68□□□□□ -0.06
CCDC93-208ENST00000474546 CUX2O14529 1486 aa14.56□□□□□ -0.08
CCDC93-208ENST00000474546 CC2D2AQ9P2K1 1620 aa14.51□□□□□ -0.09
CCDC93-208ENST00000474546 UNC13AQ9UPW8 1703 aa14.43□□□□□ -0.1
CCDC93-208ENST00000474546 AEBP2Q6ZN18 517 aaPredicted RBP14.37□□□□□ -0.11
CCDC93-208ENST00000474546 NACADO15069 1562 aa14.37□□□□□ -0.11
CCDC93-208ENST00000474546 BICRAQ9NZM4 1560 aa14.34□□□□□ -0.11
CCDC93-208ENST00000474546 SHROOM4Q9ULL8 1493 aa14.15□□□□□ -0.14
CCDC93-208ENST00000474546 EIF4G1Q04637 1599 aaKnown RBP14.13□□□□□ -0.15
CCDC93-208ENST00000474546 ERCC6Q03468 1493 aa14.05□□□□□ -0.16
CCDC93-208ENST00000474546 ILDR1Q86SU0 546 aaPredicted RBP14□□□□□ -0.17
CCDC93-208ENST00000474546 DCAF8L2P0C7V8 631 aa13.86□□□□□ -0.19
CCDC93-208ENST00000474546 MYO15BQ96JP2 1530 aa13.74□□□□□ -0.21
CCDC93-208ENST00000474546 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
CCDC93-208ENST00000474546 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
CCDC93-208ENST00000474546 THOC2Q8NI27 1593 aaKnown RBP13.6□□□□□ -0.23
CCDC93-208ENST00000474546 RIMBP3CA6NJZ7 1639 aa13.57□□□□□ -0.24
CCDC93-208ENST00000474546 RIMBP3BA6NNM3 1639 aa13.57□□□□□ -0.24
CCDC93-208ENST00000474546 RIMBP3Q9UFD9 1639 aa13.57□□□□□ -0.24
CCDC93-208ENST00000474546 BAZ1AQ9NRL2 1556 aaPredicted RBP13.54□□□□□ -0.24
CCDC93-208ENST00000474546 SCRIBQ14160 1630 aa13.42□□□□□ -0.26
CCDC93-208ENST00000474546 NESP48681 1621 aa13.38□□□□□ -0.27
CCDC93-208ENST00000474546 ARHGEF11O15085 1522 aa13.38□□□□□ -0.27
CCDC93-208ENST00000474546 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
CCDC93-208ENST00000474546 SMARCA2P51531 1590 aa13.32□□□□□ -0.28
CCDC93-208ENST00000474546 ZCCHC6Q5VYS8 1495 aaKnown RBP13.29□□□□□ -0.28
CCDC93-208ENST00000474546 NCAPD3P42695 1498 aa13.25□□□□□ -0.29
CCDC93-208ENST00000474546 SOCS7O14512 581 aa13.23□□□□□ -0.29
CCDC93-208ENST00000474546 KIF21AQ7Z4S6 1674 aa13.23□□□□□ -0.29
CCDC93-208ENST00000474546 LMTK3Q96Q04 1460 aa13.23□□□□□ -0.29
CCDC93-208ENST00000474546 LAMC3Q9Y6N6 1575 aa13.2□□□□□ -0.3
CCDC93-208ENST00000474546 HRCP23327 699 aa13.19□□□□□ -0.3
CCDC93-208ENST00000474546 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
CCDC93-208ENST00000474546 FBXO41Q8TF61 875 aa13.16□□□□□ -0.3
CCDC93-208ENST00000474546 WDR62O43379 1518 aa13.12□□□□□ -0.31
CCDC93-208ENST00000474546 ARAP1Q96P48 1450 aa13.11□□□□□ -0.31
CCDC93-208ENST00000474546 MRC2Q9UBG0 1479 aa13.1□□□□□ -0.31
CCDC93-208ENST00000474546 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
CCDC93-208ENST00000474546 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
CCDC93-208ENST00000474546 HMGXB3Q12766 1538 aa13.03□□□□□ -0.32
CCDC93-208ENST00000474546 PELP1Q8IZL8 1130 aaKnown RBP13.02□□□□□ -0.33
CCDC93-208ENST00000474546 SUPT5HO00267 1087 aaKnown RBP13.01□□□□□ -0.33
CCDC93-208ENST00000474546 ATAD2BQ9ULI0 1458 aa12.97□□□□□ -0.33
CCDC93-208ENST00000474546 KDM4FA0A1W2PPD8 638 aa12.96□□□□□ -0.33
CCDC93-208ENST00000474546 CHIC1Q5VXU3 224 aa12.95□□□□□ -0.34
CCDC93-208ENST00000474546 ILDR2Q71H61 639 aa12.95□□□□□ -0.34
CCDC93-208ENST00000474546 RSF1Q96T23 1441 aaPredicted RBP12.93□□□□□ -0.34
CCDC93-208ENST00000474546 ZEB1P37275 1124 aaPredicted RBP12.91□□□□□ -0.34
CCDC93-208ENST00000474546 HECW2Q9P2P5 1572 aa12.83□□□□□ -0.36
CCDC93-208ENST00000474546 DISP3Q9P2K9 1392 aa12.82□□□□□ -0.36
CCDC93-208ENST00000474546 BAZ1BQ9UIG0 1483 aaKnown RBP12.78□□□□□ -0.36
CCDC93-208ENST00000474546 CADPSQ9ULU8 1353 aa12.77□□□□□ -0.37
CCDC93-208ENST00000474546 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
CCDC93-208ENST00000474546 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
CCDC93-208ENST00000474546 TRIM26Q12899 539 aaPredicted RBP12.75□□□□□ -0.37
CCDC93-208ENST00000474546 CHD1O14646 1710 aa12.7□□□□□ -0.38
CCDC93-208ENST00000474546 MYT1Q01538 1121 aa12.68□□□□□ -0.38
CCDC93-208ENST00000474546 SYNJ2O15056 1496 aa12.66□□□□□ -0.38
CCDC93-208ENST00000474546 SMARCA4P51532 1647 aa12.66□□□□□ -0.38
CCDC93-208ENST00000474546 KIF13AQ9H1H9 1805 aa12.62□□□□□ -0.39
CCDC93-208ENST00000474546 ZNF608Q9ULD9 1512 aaPredicted RBP12.61□□□□□ -0.39
CCDC93-208ENST00000474546 FANCD2Q9BXW9 1451 aa12.6□□□□□ -0.39
CCDC93-208ENST00000474546 IFT140Q96RY7 1462 aa12.58□□□□□ -0.4
CCDC93-208ENST00000474546 URB2Q14146 1524 aaKnown RBP12.56□□□□□ -0.4
CCDC93-208ENST00000474546 SPATA31D1Q6ZQQ2 1576 aa12.56□□□□□ -0.4
CCDC93-208ENST00000474546 FBLN2P98095 1184 aa12.55□□□□□ -0.4
CCDC93-208ENST00000474546 PEG3Q9GZU2 1588 aa12.55□□□□□ -0.4
CCDC93-208ENST00000474546 ADGRL1O94910 1474 aa12.54□□□□□ -0.4
CCDC93-208ENST00000474546 KDM6BO15054 1643 aa12.54□□□□□ -0.4
CCDC93-208ENST00000474546 CLASP1Q7Z460 1538 aa12.52□□□□□ -0.41
CCDC93-208ENST00000474546 EIF4G3O43432 1585 aaKnown RBP12.52□□□□□ -0.41
CCDC93-208ENST00000474546 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
CCDC93-208ENST00000474546 SYNJ1O43426 1573 aa12.43□□□□□ -0.42
CCDC93-208ENST00000474546 PPARGC1BQ86YN6 1023 aaKnown RBP12.4□□□□□ -0.42
CCDC93-208ENST00000474546 FAM69CQ0P6D2 419 aa12.37□□□□□ -0.43
CCDC93-208ENST00000474546 ABCC10Q5T3U5 1492 aa12.34□□□□□ -0.43
CCDC93-208ENST00000474546 AQRO60306 1485 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC93-208ENST00000474546 CFTRP13569 1480 aa12.33□□□□□ -0.44
CCDC93-208ENST00000474546 LOC105371045A0A1W2PR82 267 aa12.32□□□□□ -0.44
CCDC93-208ENST00000474546 CERKQ8TCT0 537 aa12.3□□□□□ -0.44
CCDC93-208ENST00000474546 CENPBP07199 599 aaPredicted RBP12.29□□□□□ -0.44
CCDC93-208ENST00000474546 CHMP7Q8WUX9 453 aaPredicted RBP12.28□□□□□ -0.44
CCDC93-208ENST00000474546 TOP2BQ02880 1626 aa12.27□□□□□ -0.44
CCDC93-208ENST00000474546 DIP2BQ9P265 1576 aa12.25□□□□□ -0.45
CCDC93-208ENST00000474546 TSPOAP1O95153 1857 aa12.24□□□□□ -0.45
CCDC93-208ENST00000474546 TARBP1Q13395 1621 aaKnown RBP12.21□□□□□ -0.46
CCDC93-208ENST00000474546 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
CCDC93-208ENST00000474546 MROH2BQ7Z745 1585 aa12.2□□□□□ -0.46
CCDC93-208ENST00000474546 TOPBP1Q92547 1522 aa12.2□□□□□ -0.46
CCDC93-208ENST00000474546 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
CCDC93-208ENST00000474546 SNAPC4Q5SXM2 1469 aa12.18□□□□□ -0.46
CCDC93-208ENST00000474546 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms