RNA–Protein interactions for RNA: ENST00000471727.3

APLF-204, Transcript of aprataxin and PNKP like factor, humanhuman

TSL 1 (best)

Gene APLF, Length 1,633 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APLF-204ENST00000471727 NISCHQ9Y2I1 1504 aa22.68■■□□□ 1.22
APLF-204ENST00000471727 CCDC180Q9P1Z9 1646 aa19.5■□□□□ 0.71
APLF-204ENST00000471727 ZCCHC6Q5VYS8 1495 aaKnown RBP19.15■□□□□ 0.66
APLF-204ENST00000471727 DCAF1Q9Y4B6 1507 aa18.81■□□□□ 0.6
APLF-204ENST00000471727 SHROOM4Q9ULL8 1493 aa18.8■□□□□ 0.6
APLF-204ENST00000471727 DCAF8L2P0C7V8 631 aa18.57■□□□□ 0.56
APLF-204ENST00000471727 AEBP2Q6ZN18 517 aaPredicted RBP18.54■□□□□ 0.56
APLF-204ENST00000471727 SUPT5HO00267 1087 aaKnown RBP18.41■□□□□ 0.54
APLF-204ENST00000471727 MYO15BQ96JP2 1530 aa18.41■□□□□ 0.54
APLF-204ENST00000471727 NACADO15069 1562 aa18.1■□□□□ 0.49
APLF-204ENST00000471727 ABCC9O60706 1549 aa17.98■□□□□ 0.47
APLF-204ENST00000471727 SCRIBQ14160 1630 aa17.95■□□□□ 0.46
APLF-204ENST00000471727 CHIC1Q5VXU3 224 aa17.94■□□□□ 0.46
APLF-204ENST00000471727 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
APLF-204ENST00000471727 RSF1Q96T23 1441 aaPredicted RBP17.8■□□□□ 0.44
APLF-204ENST00000471727 CECR2Q9BXF3 1484 aa17.53■□□□□ 0.4
APLF-204ENST00000471727 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
APLF-204ENST00000471727 BAZ1AQ9NRL2 1556 aaPredicted RBP17.48■□□□□ 0.39
APLF-204ENST00000471727 WIZO95785 1651 aa17.34■□□□□ 0.37
APLF-204ENST00000471727 TRIM41Q8WV44 630 aa17.33■□□□□ 0.37
APLF-204ENST00000471727 UNC13AQ9UPW8 1703 aa17.29■□□□□ 0.36
APLF-204ENST00000471727 SMARCA4P51532 1647 aa17.28■□□□□ 0.36
APLF-204ENST00000471727 TOP2AP11388 1531 aaKnown RBP17.25■□□□□ 0.35
APLF-204ENST00000471727 LOC105371045A0A1W2PR82 267 aa17.22■□□□□ 0.35
APLF-204ENST00000471727 BICRAQ9NZM4 1560 aa17.18■□□□□ 0.34
APLF-204ENST00000471727 EIF4G1Q04637 1599 aaKnown RBP17.11■□□□□ 0.33
APLF-204ENST00000471727 PEG3Q9GZU2 1588 aa17.09■□□□□ 0.33
APLF-204ENST00000471727 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
APLF-204ENST00000471727 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
APLF-204ENST00000471727 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
APLF-204ENST00000471727 PCGF6Q9BYE7 350 aa17.01■□□□□ 0.31
APLF-204ENST00000471727 HRCP23327 699 aa16.99■□□□□ 0.31
APLF-204ENST00000471727 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.31
APLF-204ENST00000471727 FAM9AQ8IZU1 332 aaPredicted RBP16.95■□□□□ 0.3
APLF-204ENST00000471727 ATAD2BQ9ULI0 1458 aa16.92■□□□□ 0.3
APLF-204ENST00000471727 EEA1Q15075 1411 aa16.88■□□□□ 0.29
APLF-204ENST00000471727 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
APLF-204ENST00000471727 ABCC8Q09428 1581 aa16.82■□□□□ 0.28
APLF-204ENST00000471727 WRNQ14191 1432 aaPredicted RBP eCLIP16.76■□□□□ 0.27
APLF-204ENST00000471727 NCAPD3P42695 1498 aa16.72■□□□□ 0.27
APLF-204ENST00000471727 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
APLF-204ENST00000471727 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
APLF-204ENST00000471727 TNIKQ9UKE5 1360 aa16.68■□□□□ 0.26
APLF-204ENST00000471727 SOGA1O94964 1423 aa16.67■□□□□ 0.26
APLF-204ENST00000471727 ZEB1P37275 1124 aaPredicted RBP16.65■□□□□ 0.26
APLF-204ENST00000471727 EHMT2Q96KQ7 1210 aa16.63■□□□□ 0.25
APLF-204ENST00000471727 GOLGA3Q08378 1498 aa16.6■□□□□ 0.25
APLF-204ENST00000471727 SYNJ1O43426 1573 aa16.58■□□□□ 0.24
APLF-204ENST00000471727 CEP162Q5TB80 1403 aa16.57■□□□□ 0.24
APLF-204ENST00000471727 CEP164Q9UPV0 1460 aa16.56■□□□□ 0.24
APLF-204ENST00000471727 RUSC2Q8N2Y8 1516 aa16.54■□□□□ 0.24
APLF-204ENST00000471727 TOP2BQ02880 1626 aa16.52■□□□□ 0.24
APLF-204ENST00000471727 KIF21BO75037 1637 aa16.52■□□□□ 0.23
APLF-204ENST00000471727 UBTFP17480 764 aaKnown RBP16.52■□□□□ 0.23
APLF-204ENST00000471727 CFTRP13569 1480 aa16.47■□□□□ 0.23
APLF-204ENST00000471727 BIVM-ERCC5R4GMW8 1640 aa16.47■□□□□ 0.23
APLF-204ENST00000471727 PPARGC1BQ86YN6 1023 aaKnown RBP16.39■□□□□ 0.21
APLF-204ENST00000471727 CLIP1P30622 1438 aa16.34■□□□□ 0.21
APLF-204ENST00000471727 ERICH3Q5RHP9 1530 aa16.34■□□□□ 0.21
APLF-204ENST00000471727 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.21
APLF-204ENST00000471727 CUX1P39880 1505 aa16.33■□□□□ 0.2
APLF-204ENST00000471727 KIF27Q86VH2 1401 aa16.32■□□□□ 0.2
APLF-204ENST00000471727 PRXQ9BXM0 1461 aa16.31■□□□□ 0.2
APLF-204ENST00000471727 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
APLF-204ENST00000471727 RAPGEF2Q9Y4G8 1499 aa16.3■□□□□ 0.2
APLF-204ENST00000471727 VPS8Q8N3P4 1428 aa16.28■□□□□ 0.2
APLF-204ENST00000471727 CC2D2AQ9P2K1 1620 aa16.25■□□□□ 0.19
APLF-204ENST00000471727 APLP2Q06481 763 aa16.22■□□□□ 0.19
APLF-204ENST00000471727 CCER1Q8TC90 406 aaPredicted RBP16.18■□□□□ 0.18
APLF-204ENST00000471727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.12■□□□□ 0.17
APLF-204ENST00000471727 CUX2O14529 1486 aa16.11■□□□□ 0.17
APLF-204ENST00000471727 FANCD2Q9BXW9 1451 aa16.11■□□□□ 0.17
APLF-204ENST00000471727 IGF1RP08069 1367 aa16.1■□□□□ 0.17
APLF-204ENST00000471727 FGD5Q6ZNL6 1462 aa16.09■□□□□ 0.17
APLF-204ENST00000471727 ARAP1Q96P48 1450 aa16.07■□□□□ 0.16
APLF-204ENST00000471727 TTBK1Q5TCY1 1321 aaPredicted RBP16.07■□□□□ 0.16
APLF-204ENST00000471727 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
APLF-204ENST00000471727 CARMIL1Q5VZK9 1371 aa16.04■□□□□ 0.16
APLF-204ENST00000471727 LAMC3Q9Y6N6 1575 aa16.03■□□□□ 0.16
APLF-204ENST00000471727 SENP3Q9H4L4 574 aaPredicted RBP16.01■□□□□ 0.15
APLF-204ENST00000471727 ABCA10Q8WWZ4 1543 aa16■□□□□ 0.15
APLF-204ENST00000471727 RANGAP1P46060 587 aaPredicted RBP15.99■□□□□ 0.15
APLF-204ENST00000471727 TOPBP1Q92547 1522 aa15.98■□□□□ 0.15
APLF-204ENST00000471727 ARHGAP35Q9NRY4 1499 aa15.98■□□□□ 0.15
APLF-204ENST00000471727 PDS5BQ9NTI5 1447 aa15.95■□□□□ 0.14
APLF-204ENST00000471727 MAP3K1Q13233 1512 aa15.95■□□□□ 0.14
APLF-204ENST00000471727 POLA1P09884 1462 aaPredicted RBP15.94■□□□□ 0.14
APLF-204ENST00000471727 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
APLF-204ENST00000471727 NESP48681 1621 aa15.9■□□□□ 0.14
APLF-204ENST00000471727 FHAD1B1AJZ9 1412 aa15.89■□□□□ 0.13
APLF-204ENST00000471727 CUL7Q14999 1698 aa15.89■□□□□ 0.13
APLF-204ENST00000471727 RRBP1Q9P2E9 1410 aaKnown RBP15.89■□□□□ 0.13
APLF-204ENST00000471727 CLSPNQ9HAW4 1339 aa15.89■□□□□ 0.13
APLF-204ENST00000471727 RAD54L2Q9Y4B4 1467 aa15.87■□□□□ 0.13
APLF-204ENST00000471727 KANK4Q5T7N3 995 aaPredicted RBP15.86■□□□□ 0.13
APLF-204ENST00000471727 URB2Q14146 1524 aaKnown RBP15.84■□□□□ 0.13
APLF-204ENST00000471727 EFCAB5A4FU69 1503 aa15.84■□□□□ 0.13
APLF-204ENST00000471727 CCNB3Q8WWL7 1395 aa15.8■□□□□ 0.12
APLF-204ENST00000471727 TIAM1Q13009 1591 aa15.8■□□□□ 0.12
APLF-204ENST00000471727 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms