RNA–Protein interactions for RNA: ENST00000463753.5

COL8A1-205, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL8A1, Length 2,964 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-205ENST00000463753 AEBP2Q6ZN18 517 aaPredicted RBP10.5□□□□□ -0.73
COL8A1-205ENST00000463753 CHIC1Q5VXU3 224 aa10.32□□□□□ -0.76
COL8A1-205ENST00000463753 PHF23Q9BUL5 403 aaPredicted RBP9.06□□□□□ -0.96
COL8A1-205ENST00000463753 SENP3Q9H4L4 574 aaPredicted RBP8.92□□□□□ -0.98
COL8A1-205ENST00000463753 PLPPR3Q6T4P5 718 aa8.36□□□□□ -1.07
COL8A1-205ENST00000463753 FOXD1Q16676 465 aa8.25□□□□□ -1.09
COL8A1-205ENST00000463753 PPP6R1Q9UPN7 881 aa7.92□□□□□ -1.14
COL8A1-205ENST00000463753 ADRA2BP18089 450 aa7.88□□□□□ -1.15
COL8A1-205ENST00000463753 POTEDQ86YR6 584 aa7.8□□□□□ -1.16
COL8A1-205ENST00000463753 PIAS4Q8N2W9 510 aaPredicted RBP7.72□□□□□ -1.17
COL8A1-205ENST00000463753 CCDC180Q9P1Z9 1646 aa7.72□□□□□ -1.17
COL8A1-205ENST00000463753 NISCHQ9Y2I1 1504 aa7.71□□□□□ -1.17
COL8A1-205ENST00000463753 MSH5O43196 834 aa7.64□□□□□ -1.19
COL8A1-205ENST00000463753 SHROOM4Q9ULL8 1493 aa7.58□□□□□ -1.2
COL8A1-205ENST00000463753 DNAJC5Q9H3Z4 198 aa7.5□□□□□ -1.21
COL8A1-205ENST00000463753 PPP4R3CPQ6ZMV5 832 aa7.35□□□□□ -1.23
COL8A1-205ENST00000463753 RB1CC1Q8TDY2 1594 aa7.33□□□□□ -1.24
COL8A1-205ENST00000463753 MYO15BQ96JP2 1530 aa7.3□□□□□ -1.24
COL8A1-205ENST00000463753 CUX2O14529 1486 aa7.28□□□□□ -1.24
COL8A1-205ENST00000463753 SCAF1Q9H7N4 1312 aaKnown RBP7.27□□□□□ -1.25
COL8A1-205ENST00000463753 NACADO15069 1562 aa7.25□□□□□ -1.25
COL8A1-205ENST00000463753 ABCC9O60706 1549 aa7.24□□□□□ -1.25
COL8A1-205ENST00000463753 CNKSR2Q8WXI2 1034 aa7.17□□□□□ -1.26
COL8A1-205ENST00000463753 NCBP3Q53F19 620 aaKnown RBP7.17□□□□□ -1.26
COL8A1-205ENST00000463753 DMRT2Q9Y5R5 561 aa7.16□□□□□ -1.26
COL8A1-205ENST00000463753 KCNA4P22459 653 aa7.16□□□□□ -1.26
COL8A1-205ENST00000463753 DNAJC5BQ9UF47 199 aa7.16□□□□□ -1.26
COL8A1-205ENST00000463753 MAPK8IP2Q13387 824 aaPredicted RBP7.13□□□□□ -1.27
COL8A1-205ENST00000463753 UNC13AQ9UPW8 1703 aa7.08□□□□□ -1.28
COL8A1-205ENST00000463753 NPM3O75607 178 aaKnown RBP7.06□□□□□ -1.28
COL8A1-205ENST00000463753 RNF216Q9NWF9 866 aaPredicted RBP7.06□□□□□ -1.28
COL8A1-205ENST00000463753 HOXD11P31277 338 aaPredicted RBP7.05□□□□□ -1.28
COL8A1-205ENST00000463753 BICRAQ9NZM4 1560 aa6.99□□□□□ -1.29
COL8A1-205ENST00000463753 CC2D2AQ9P2K1 1620 aa6.92□□□□□ -1.3
COL8A1-205ENST00000463753 CECR2Q9BXF3 1484 aa6.87□□□□□ -1.31
COL8A1-205ENST00000463753 DCAF1Q9Y4B6 1507 aa6.83□□□□□ -1.32
COL8A1-205ENST00000463753 SLC4A1APQ9BWU0 796 aaKnown RBP6.82□□□□□ -1.32
COL8A1-205ENST00000463753 EIF4G1Q04637 1599 aaKnown RBP6.81□□□□□ -1.32
COL8A1-205ENST00000463753 THOC2Q8NI27 1593 aaKnown RBP6.71□□□□□ -1.34
COL8A1-205ENST00000463753 SLC4A2P04920 1241 aa6.69□□□□□ -1.34
COL8A1-205ENST00000463753 FOXD4L1Q9NU39 408 aa6.63□□□□□ -1.35
COL8A1-205ENST00000463753 ZBTB22O15209 634 aa6.63□□□□□ -1.35
COL8A1-205ENST00000463753 HMGXB3Q12766 1538 aa6.6□□□□□ -1.35
COL8A1-205ENST00000463753 CSRNP3Q8WYN3 585 aa6.6□□□□□ -1.35
COL8A1-205ENST00000463753 LAMC3Q9Y6N6 1575 aa6.6□□□□□ -1.35
COL8A1-205ENST00000463753 DCAF8L1A6NGE4 600 aa6.58□□□□□ -1.36
COL8A1-205ENST00000463753 SMARCA2P51531 1590 aa6.58□□□□□ -1.36
COL8A1-205ENST00000463753 RNF39Q9H2S5 420 aa6.55□□□□□ -1.36
COL8A1-205ENST00000463753 MYCNP04198 464 aaPredicted RBP6.55□□□□□ -1.36
COL8A1-205ENST00000463753 BAZ1AQ9NRL2 1556 aaPredicted RBP6.55□□□□□ -1.36
COL8A1-205ENST00000463753 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.54□□□□□ -1.36
COL8A1-205ENST00000463753 U3KPZ7 1027 aaPredicted RBP6.54□□□□□ -1.36
COL8A1-205ENST00000463753 NCAPD3P42695 1498 aa6.53□□□□□ -1.36
COL8A1-205ENST00000463753 EHMT2Q96KQ7 1210 aa6.51□□□□□ -1.37
COL8A1-205ENST00000463753 ERCC6L2Q5T890 1561 aa6.51□□□□□ -1.37
COL8A1-205ENST00000463753 WDR62O43379 1518 aa6.51□□□□□ -1.37
COL8A1-205ENST00000463753 ATXN8OSP0DMR3 200 aa6.5□□□□□ -1.37
COL8A1-205ENST00000463753 PABPN1Q86U42 306 aaKnown RBP eCLIP6.48□□□□□ -1.37
COL8A1-205ENST00000463753 RIMBP3CA6NJZ7 1639 aa6.48□□□□□ -1.37
COL8A1-205ENST00000463753 RIMBP3BA6NNM3 1639 aa6.48□□□□□ -1.37
COL8A1-205ENST00000463753 RIMBP3Q9UFD9 1639 aa6.48□□□□□ -1.37
COL8A1-205ENST00000463753 C1QBPQ07021 282 aaKnown RBP6.48□□□□□ -1.37
COL8A1-205ENST00000463753 WDR97A6NE52 1622 aa6.48□□□□□ -1.37
COL8A1-205ENST00000463753 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.48□□□□□ -1.37
COL8A1-205ENST00000463753 HNRNPUL2Q1KMD3 747 aaKnown RBP6.48□□□□□ -1.37
COL8A1-205ENST00000463753 PEG3Q9GZU2 1588 aa6.46□□□□□ -1.37
COL8A1-205ENST00000463753 BAZ1BQ9UIG0 1483 aaKnown RBP6.46□□□□□ -1.38
COL8A1-205ENST00000463753 ERCC6Q03468 1493 aa6.45□□□□□ -1.38
COL8A1-205ENST00000463753 SAMD1Q6SPF0 538 aaPredicted RBP6.44□□□□□ -1.38
COL8A1-205ENST00000463753 APLP2Q06481 763 aa6.42□□□□□ -1.38
COL8A1-205ENST00000463753 RSF1Q96T23 1441 aaPredicted RBP6.42□□□□□ -1.38
COL8A1-205ENST00000463753 PELP1Q8IZL8 1130 aaKnown RBP6.36□□□□□ -1.39
COL8A1-205ENST00000463753 MRC2Q9UBG0 1479 aa6.35□□□□□ -1.39
COL8A1-205ENST00000463753 PRDM2Q13029 1718 aa6.34□□□□□ -1.39
COL8A1-205ENST00000463753 PDS5BQ9NTI5 1447 aa6.33□□□□□ -1.4
COL8A1-205ENST00000463753 KIF21AQ7Z4S6 1674 aa6.33□□□□□ -1.4
COL8A1-205ENST00000463753 ATF5Q9Y2D1 282 aaPredicted RBP6.32□□□□□ -1.4
COL8A1-205ENST00000463753 ARHGEF11O15085 1522 aa6.32□□□□□ -1.4
COL8A1-205ENST00000463753 ZNF219Q9P2Y4 722 aaPredicted RBP6.29□□□□□ -1.4
COL8A1-205ENST00000463753 ZCCHC6Q5VYS8 1495 aaKnown RBP6.28□□□□□ -1.4
COL8A1-205ENST00000463753 SPINK5Q9NQ38 1064 aaPredicted RBP6.27□□□□□ -1.41
COL8A1-205ENST00000463753 NESP48681 1621 aa6.24□□□□□ -1.41
COL8A1-205ENST00000463753 CACNB1Q02641 598 aaPredicted RBP6.23□□□□□ -1.41
COL8A1-205ENST00000463753 OSCARQ8IYS5 282 aa6.23□□□□□ -1.41
COL8A1-205ENST00000463753 DSG3P32926 999 aa6.22□□□□□ -1.41
COL8A1-205ENST00000463753 CLASP1Q7Z460 1538 aa6.21□□□□□ -1.42
COL8A1-205ENST00000463753 ATAD2BQ9ULI0 1458 aa6.2□□□□□ -1.42
COL8A1-205ENST00000463753 MYT1Q01538 1121 aa6.2□□□□□ -1.42
COL8A1-205ENST00000463753 CAPN15O75808 1086 aa6.2□□□□□ -1.42
COL8A1-205ENST00000463753 TRIM41Q8WV44 630 aa6.19□□□□□ -1.42
COL8A1-205ENST00000463753 SCRIBQ14160 1630 aa6.19□□□□□ -1.42
COL8A1-205ENST00000463753 ARAP1Q96P48 1450 aa6.18□□□□□ -1.42
COL8A1-205ENST00000463753 KDM6BO15054 1643 aa6.17□□□□□ -1.42
COL8A1-205ENST00000463753 ABCC8Q09428 1581 aa6.16□□□□□ -1.42
COL8A1-205ENST00000463753 SMARCA4P51532 1647 aa6.15□□□□□ -1.42
COL8A1-205ENST00000463753 TRHP20396 242 aaPredicted RBP6.15□□□□□ -1.42
COL8A1-205ENST00000463753 IFT140Q96RY7 1462 aa6.15□□□□□ -1.42
COL8A1-205ENST00000463753 ILDR1Q86SU0 546 aaPredicted RBP6.14□□□□□ -1.43
COL8A1-205ENST00000463753 ZBTB12Q9Y330 459 aaPredicted RBP6.13□□□□□ -1.43
COL8A1-205ENST00000463753 KIF13AQ9H1H9 1805 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms