RNA–Protein interactions for RNA: ENST00000463005.1

GARNL3-212, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 887 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-212ENST00000463005 AEBP2Q6ZN18 517 aaPredicted RBP22.75■■□□□ 1.23
GARNL3-212ENST00000463005 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
GARNL3-212ENST00000463005 NISCHQ9Y2I1 1504 aa20.15■□□□□ 0.82
GARNL3-212ENST00000463005 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
GARNL3-212ENST00000463005 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
GARNL3-212ENST00000463005 ABCC9O60706 1549 aa18.41■□□□□ 0.54
GARNL3-212ENST00000463005 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
GARNL3-212ENST00000463005 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
GARNL3-212ENST00000463005 FOXD1Q16676 465 aa17.75■□□□□ 0.43
GARNL3-212ENST00000463005 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
GARNL3-212ENST00000463005 ADRA2BP18089 450 aa17.51■□□□□ 0.39
GARNL3-212ENST00000463005 PPP6R1Q9UPN7 881 aa17.51■□□□□ 0.39
GARNL3-212ENST00000463005 RB1CC1Q8TDY2 1594 aa17.47■□□□□ 0.39
GARNL3-212ENST00000463005 NACADO15069 1562 aa17.31■□□□□ 0.36
GARNL3-212ENST00000463005 DCAF8L2P0C7V8 631 aa17.14■□□□□ 0.33
GARNL3-212ENST00000463005 PABPN1Q86U42 306 aaKnown RBP eCLIP17.11■□□□□ 0.33
GARNL3-212ENST00000463005 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
GARNL3-212ENST00000463005 MYO15BQ96JP2 1530 aa17■□□□□ 0.31
GARNL3-212ENST00000463005 BICRAQ9NZM4 1560 aa16.93■□□□□ 0.3
GARNL3-212ENST00000463005 PIAS4Q8N2W9 510 aaPredicted RBP16.82■□□□□ 0.28
GARNL3-212ENST00000463005 SHROOM4Q9ULL8 1493 aa16.73■□□□□ 0.27
GARNL3-212ENST00000463005 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
GARNL3-212ENST00000463005 CC2D2AQ9P2K1 1620 aa16.65■□□□□ 0.26
GARNL3-212ENST00000463005 CECR2Q9BXF3 1484 aa16.63■□□□□ 0.25
GARNL3-212ENST00000463005 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
GARNL3-212ENST00000463005 KCNA4P22459 653 aa16.59■□□□□ 0.25
GARNL3-212ENST00000463005 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
GARNL3-212ENST00000463005 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
GARNL3-212ENST00000463005 PPP4R3CPQ6ZMV5 832 aa16.37■□□□□ 0.21
GARNL3-212ENST00000463005 DNAJC5Q9H3Z4 198 aa16.34■□□□□ 0.21
GARNL3-212ENST00000463005 CUX2O14529 1486 aa16.03■□□□□ 0.16
GARNL3-212ENST00000463005 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
GARNL3-212ENST00000463005 MSH5O43196 834 aa15.99■□□□□ 0.15
GARNL3-212ENST00000463005 NCAPD3P42695 1498 aa15.97■□□□□ 0.15
GARNL3-212ENST00000463005 ERCC6Q03468 1493 aa15.94■□□□□ 0.14
GARNL3-212ENST00000463005 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
GARNL3-212ENST00000463005 NPM3O75607 178 aaKnown RBP15.86■□□□□ 0.13
GARNL3-212ENST00000463005 ATAD2BQ9ULI0 1458 aa15.85■□□□□ 0.13
GARNL3-212ENST00000463005 SMARCA2P51531 1590 aa15.82■□□□□ 0.12
GARNL3-212ENST00000463005 HMGXB3Q12766 1538 aa15.8■□□□□ 0.12
GARNL3-212ENST00000463005 MAPK8IP2Q13387 824 aaPredicted RBP15.8■□□□□ 0.12
GARNL3-212ENST00000463005 SLC4A1APQ9BWU0 796 aaKnown RBP15.79■□□□□ 0.12
GARNL3-212ENST00000463005 SMARCA4P51532 1647 aa15.76■□□□□ 0.11
GARNL3-212ENST00000463005 NESP48681 1621 aa15.72■□□□□ 0.11
GARNL3-212ENST00000463005 SCAF1Q9H7N4 1312 aaKnown RBP15.72■□□□□ 0.11
GARNL3-212ENST00000463005 CNKSR2Q8WXI2 1034 aa15.72■□□□□ 0.11
GARNL3-212ENST00000463005 BAZ1BQ9UIG0 1483 aaKnown RBP15.68■□□□□ 0.1
GARNL3-212ENST00000463005 BAZ1AQ9NRL2 1556 aaPredicted RBP15.67■□□□□ 0.1
GARNL3-212ENST00000463005 LAMC3Q9Y6N6 1575 aa15.66■□□□□ 0.1
GARNL3-212ENST00000463005 PEG3Q9GZU2 1588 aa15.64■□□□□ 0.09
GARNL3-212ENST00000463005 THOC2Q8NI27 1593 aaKnown RBP15.63■□□□□ 0.09
GARNL3-212ENST00000463005 PDS5BQ9NTI5 1447 aa15.58■□□□□ 0.08
GARNL3-212ENST00000463005 KIF21AQ7Z4S6 1674 aa15.55■□□□□ 0.08
GARNL3-212ENST00000463005 CSRNP3Q8WYN3 585 aa15.54■□□□□ 0.08
GARNL3-212ENST00000463005 MROH2BQ7Z745 1585 aa15.49■□□□□ 0.07
GARNL3-212ENST00000463005 CADPSQ9ULU8 1353 aa15.47■□□□□ 0.07
GARNL3-212ENST00000463005 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
GARNL3-212ENST00000463005 MRC2Q9UBG0 1479 aa15.41■□□□□ 0.06
GARNL3-212ENST00000463005 WDR62O43379 1518 aa15.38■□□□□ 0.05
GARNL3-212ENST00000463005 ZBTB22O15209 634 aa15.34■□□□□ 0.05
GARNL3-212ENST00000463005 WIZO95785 1651 aa15.31■□□□□ 0.04
GARNL3-212ENST00000463005 OSCARQ8IYS5 282 aa15.3■□□□□ 0.04
GARNL3-212ENST00000463005 CEP164Q9UPV0 1460 aa15.3■□□□□ 0.04
GARNL3-212ENST00000463005 DMRT2Q9Y5R5 561 aa15.29■□□□□ 0.04
GARNL3-212ENST00000463005 RNF216Q9NWF9 866 aaPredicted RBP15.28■□□□□ 0.04
GARNL3-212ENST00000463005 FANCD2Q9BXW9 1451 aa15.26■□□□□ 0.03
GARNL3-212ENST00000463005 CFTRP13569 1480 aa15.22■□□□□ 0.03
GARNL3-212ENST00000463005 URB2Q14146 1524 aaKnown RBP15.13■□□□□ 0.01
GARNL3-212ENST00000463005 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
GARNL3-212ENST00000463005 TOP2AP11388 1531 aaKnown RBP15.1■□□□□ 0.01
GARNL3-212ENST00000463005 RSF1Q96T23 1441 aaPredicted RBP15.09■□□□□ 0.01
GARNL3-212ENST00000463005 PRDM2Q13029 1718 aa15.09■□□□□ 0.01
GARNL3-212ENST00000463005 RIMBP3CA6NJZ7 1639 aa15.05■□□□□ -0
GARNL3-212ENST00000463005 RIMBP3BA6NNM3 1639 aa15.05■□□□□ -0
GARNL3-212ENST00000463005 RIMBP3Q9UFD9 1639 aa15.05■□□□□ -0
GARNL3-212ENST00000463005 IFT140Q96RY7 1462 aa15.03■□□□□ -0
GARNL3-212ENST00000463005 FOXD4L1Q9NU39 408 aa15.01□□□□□ -0.01
GARNL3-212ENST00000463005 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
GARNL3-212ENST00000463005 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
GARNL3-212ENST00000463005 ZNF608Q9ULD9 1512 aaPredicted RBP14.97□□□□□ -0.01
GARNL3-212ENST00000463005 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
GARNL3-212ENST00000463005 TOPBP1Q92547 1522 aa14.94□□□□□ -0.02
GARNL3-212ENST00000463005 CYB5RLQ6IPT4 315 aa14.92□□□□□ -0.02
GARNL3-212ENST00000463005 SLC4A2P04920 1241 aa14.9□□□□□ -0.02
GARNL3-212ENST00000463005 EIF4G3O43432 1585 aaKnown RBP14.89□□□□□ -0.03
GARNL3-212ENST00000463005 DNMBPQ6XZF7 1577 aa14.87□□□□□ -0.03
GARNL3-212ENST00000463005 CHD1O14646 1710 aa14.86□□□□□ -0.03
GARNL3-212ENST00000463005 TRHP20396 242 aaPredicted RBP14.84□□□□□ -0.03
GARNL3-212ENST00000463005 AQRO60306 1485 aaKnown RBP eCLIP14.83□□□□□ -0.03
GARNL3-212ENST00000463005 TARBP1Q13395 1621 aaKnown RBP14.83□□□□□ -0.04
GARNL3-212ENST00000463005 FBLN2P98095 1184 aa14.81□□□□□ -0.04
GARNL3-212ENST00000463005 ARAP1Q96P48 1450 aa14.79□□□□□ -0.04
GARNL3-212ENST00000463005 POLA1P09884 1462 aaPredicted RBP14.76□□□□□ -0.05
GARNL3-212ENST00000463005 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
GARNL3-212ENST00000463005 SOGA1O94964 1423 aa14.74□□□□□ -0.05
GARNL3-212ENST00000463005 WDR97A6NE52 1622 aa14.72□□□□□ -0.05
GARNL3-212ENST00000463005 TDRD9Q8NDG6 1382 aaKnown RBP14.71□□□□□ -0.06
GARNL3-212ENST00000463005 RAD54L2Q9Y4B4 1467 aa14.7□□□□□ -0.06
GARNL3-212ENST00000463005 CHMP7Q8WUX9 453 aaPredicted RBP14.69□□□□□ -0.06
GARNL3-212ENST00000463005 SYNJ1O43426 1573 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms