RNA–Protein interactions for RNA: ENST00000461173.5

DHFR2-203, Transcript of dihydrofolate reductase 2, humanhuman

TSL 1 (best)

Gene DHFR2, Length 1,831 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR2-203ENST00000461173 NISCHQ9Y2I1 1504 aa21.09■□□□□ 0.97
DHFR2-203ENST00000461173 CCDC180Q9P1Z9 1646 aa18.15■□□□□ 0.5
DHFR2-203ENST00000461173 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
DHFR2-203ENST00000461173 DCAF1Q9Y4B6 1507 aa17.52■□□□□ 0.4
DHFR2-203ENST00000461173 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
DHFR2-203ENST00000461173 MYO15BQ96JP2 1530 aa17.14■□□□□ 0.33
DHFR2-203ENST00000461173 DCAF8L2P0C7V8 631 aa17.08■□□□□ 0.33
DHFR2-203ENST00000461173 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
DHFR2-203ENST00000461173 NACADO15069 1562 aa16.8■□□□□ 0.28
DHFR2-203ENST00000461173 ABCC9O60706 1549 aa16.78■□□□□ 0.28
DHFR2-203ENST00000461173 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
DHFR2-203ENST00000461173 AEBP2Q6ZN18 517 aaPredicted RBP16.68■□□□□ 0.26
DHFR2-203ENST00000461173 SCRIBQ14160 1630 aa16.66■□□□□ 0.26
DHFR2-203ENST00000461173 RSF1Q96T23 1441 aaPredicted RBP16.56■□□□□ 0.24
DHFR2-203ENST00000461173 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
DHFR2-203ENST00000461173 CECR2Q9BXF3 1484 aa16.29■□□□□ 0.2
DHFR2-203ENST00000461173 MROH2BQ7Z745 1585 aa16.27■□□□□ 0.2
DHFR2-203ENST00000461173 BAZ1AQ9NRL2 1556 aaPredicted RBP16.24■□□□□ 0.19
DHFR2-203ENST00000461173 WIZO95785 1651 aa16.13■□□□□ 0.17
DHFR2-203ENST00000461173 UNC13AQ9UPW8 1703 aa16.11■□□□□ 0.17
DHFR2-203ENST00000461173 SMARCA4P51532 1647 aa16.07■□□□□ 0.16
DHFR2-203ENST00000461173 TRIM41Q8WV44 630 aa16.06■□□□□ 0.16
DHFR2-203ENST00000461173 TOP2AP11388 1531 aaKnown RBP16.05■□□□□ 0.16
DHFR2-203ENST00000461173 EIF4G1Q04637 1599 aaKnown RBP16.01■□□□□ 0.15
DHFR2-203ENST00000461173 LOC105371045A0A1W2PR82 267 aa16■□□□□ 0.15
DHFR2-203ENST00000461173 BICRAQ9NZM4 1560 aa15.97■□□□□ 0.15
DHFR2-203ENST00000461173 PEG3Q9GZU2 1588 aa15.93■□□□□ 0.14
DHFR2-203ENST00000461173 HRCP23327 699 aa15.91■□□□□ 0.14
DHFR2-203ENST00000461173 SMARCA2P51531 1590 aa15.89■□□□□ 0.13
DHFR2-203ENST00000461173 CCDC88BA6NC98 1476 aa15.88■□□□□ 0.13
DHFR2-203ENST00000461173 PCGF6Q9BYE7 350 aa15.84■□□□□ 0.13
DHFR2-203ENST00000461173 TRIM26Q12899 539 aaPredicted RBP15.8■□□□□ 0.12
DHFR2-203ENST00000461173 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
DHFR2-203ENST00000461173 ATAD2BQ9ULI0 1458 aa15.7■□□□□ 0.1
DHFR2-203ENST00000461173 EEA1Q15075 1411 aa15.7■□□□□ 0.1
DHFR2-203ENST00000461173 FAM9AQ8IZU1 332 aaPredicted RBP15.68■□□□□ 0.1
DHFR2-203ENST00000461173 ABCC8Q09428 1581 aa15.64■□□□□ 0.09
DHFR2-203ENST00000461173 BAZ1BQ9UIG0 1483 aaKnown RBP15.61■□□□□ 0.09
DHFR2-203ENST00000461173 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
DHFR2-203ENST00000461173 TNIKQ9UKE5 1360 aa15.53■□□□□ 0.08
DHFR2-203ENST00000461173 HMGXB3Q12766 1538 aa15.53■□□□□ 0.08
DHFR2-203ENST00000461173 ZEB1P37275 1124 aaPredicted RBP15.51■□□□□ 0.07
DHFR2-203ENST00000461173 NCAPD3P42695 1498 aa15.51■□□□□ 0.07
DHFR2-203ENST00000461173 SOGA1O94964 1423 aa15.5■□□□□ 0.07
DHFR2-203ENST00000461173 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
DHFR2-203ENST00000461173 GOLGA3Q08378 1498 aa15.44■□□□□ 0.06
DHFR2-203ENST00000461173 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
DHFR2-203ENST00000461173 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
DHFR2-203ENST00000461173 KIF21BO75037 1637 aa15.41■□□□□ 0.06
DHFR2-203ENST00000461173 CEP164Q9UPV0 1460 aa15.39■□□□□ 0.05
DHFR2-203ENST00000461173 TOP2BQ02880 1626 aa15.38■□□□□ 0.05
DHFR2-203ENST00000461173 RUSC2Q8N2Y8 1516 aa15.38■□□□□ 0.05
DHFR2-203ENST00000461173 BIVM-ERCC5R4GMW8 1640 aa15.35■□□□□ 0.05
DHFR2-203ENST00000461173 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
DHFR2-203ENST00000461173 PPARGC1BQ86YN6 1023 aaKnown RBP15.31■□□□□ 0.04
DHFR2-203ENST00000461173 CFTRP13569 1480 aa15.3■□□□□ 0.04
DHFR2-203ENST00000461173 UBTFP17480 764 aaKnown RBP15.27■□□□□ 0.04
DHFR2-203ENST00000461173 ERICH3Q5RHP9 1530 aa15.23■□□□□ 0.03
DHFR2-203ENST00000461173 PRDM2Q13029 1718 aa15.21■□□□□ 0.03
DHFR2-203ENST00000461173 PRXQ9BXM0 1461 aa15.19■□□□□ 0.02
DHFR2-203ENST00000461173 CLIP1P30622 1438 aa15.19■□□□□ 0.02
DHFR2-203ENST00000461173 CUX1P39880 1505 aa15.19■□□□□ 0.02
DHFR2-203ENST00000461173 RAPGEF2Q9Y4G8 1499 aa15.18■□□□□ 0.02
DHFR2-203ENST00000461173 VPS8Q8N3P4 1428 aa15.16■□□□□ 0.02
DHFR2-203ENST00000461173 KIF27Q86VH2 1401 aa15.14■□□□□ 0.01
DHFR2-203ENST00000461173 CADPSQ9ULU8 1353 aa15.13■□□□□ 0.01
DHFR2-203ENST00000461173 CC2D2AQ9P2K1 1620 aa15.05■□□□□ -0
DHFR2-203ENST00000461173 CCER1Q8TC90 406 aaPredicted RBP15.02■□□□□ -0
DHFR2-203ENST00000461173 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.99□□□□□ -0.01
DHFR2-203ENST00000461173 APLP2Q06481 763 aa14.99□□□□□ -0.01
DHFR2-203ENST00000461173 ARAP1Q96P48 1450 aa14.97□□□□□ -0.01
DHFR2-203ENST00000461173 IGF1RP08069 1367 aa14.95□□□□□ -0.02
DHFR2-203ENST00000461173 PELP1Q8IZL8 1130 aaKnown RBP14.94□□□□□ -0.02
DHFR2-203ENST00000461173 CUX2O14529 1486 aa14.93□□□□□ -0.02
DHFR2-203ENST00000461173 FGD5Q6ZNL6 1462 aa14.93□□□□□ -0.02
DHFR2-203ENST00000461173 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
DHFR2-203ENST00000461173 DNMBPQ6XZF7 1577 aa14.91□□□□□ -0.02
DHFR2-203ENST00000461173 ARHGAP35Q9NRY4 1499 aa14.88□□□□□ -0.03
DHFR2-203ENST00000461173 MAP3K1Q13233 1512 aa14.88□□□□□ -0.03
DHFR2-203ENST00000461173 ABCA10Q8WWZ4 1543 aa14.87□□□□□ -0.03
DHFR2-203ENST00000461173 CARMIL1Q5VZK9 1371 aa14.87□□□□□ -0.03
DHFR2-203ENST00000461173 TTBK1Q5TCY1 1321 aaPredicted RBP14.86□□□□□ -0.03
DHFR2-203ENST00000461173 LAMC3Q9Y6N6 1575 aa14.86□□□□□ -0.03
DHFR2-203ENST00000461173 TOPBP1Q92547 1522 aa14.83□□□□□ -0.04
DHFR2-203ENST00000461173 RRBP1Q9P2E9 1410 aaKnown RBP14.83□□□□□ -0.04
DHFR2-203ENST00000461173 CLSPNQ9HAW4 1339 aa14.82□□□□□ -0.04
DHFR2-203ENST00000461173 POLA1P09884 1462 aaPredicted RBP14.8□□□□□ -0.04
DHFR2-203ENST00000461173 CUL7Q14999 1698 aa14.78□□□□□ -0.04
DHFR2-203ENST00000461173 FHAD1B1AJZ9 1412 aa14.76□□□□□ -0.05
DHFR2-203ENST00000461173 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
DHFR2-203ENST00000461173 EFCAB5A4FU69 1503 aa14.74□□□□□ -0.05
DHFR2-203ENST00000461173 RANGAP1P46060 587 aaPredicted RBP14.74□□□□□ -0.05
DHFR2-203ENST00000461173 PDS5BQ9NTI5 1447 aa14.74□□□□□ -0.05
DHFR2-203ENST00000461173 KANK4Q5T7N3 995 aaPredicted RBP14.73□□□□□ -0.05
DHFR2-203ENST00000461173 WDR97A6NE52 1622 aa14.73□□□□□ -0.05
DHFR2-203ENST00000461173 NESP48681 1621 aa14.72□□□□□ -0.05
DHFR2-203ENST00000461173 TIAM1Q13009 1591 aa14.72□□□□□ -0.05
DHFR2-203ENST00000461173 RAD54L2Q9Y4B4 1467 aa14.71□□□□□ -0.05
DHFR2-203ENST00000461173 CCNB3Q8WWL7 1395 aa14.7□□□□□ -0.06
DHFR2-203ENST00000461173 AQRO60306 1485 aaKnown RBP eCLIP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms