RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 NISCHQ9Y2I1 1504 aa26.52■■□□□ 1.84
LINC00959-201ENST00000456581 CCDC180Q9P1Z9 1646 aa22.8■■□□□ 1.24
LINC00959-201ENST00000456581 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
LINC00959-201ENST00000456581 ZCCHC6Q5VYS8 1495 aaKnown RBP22.33■■□□□ 1.16
LINC00959-201ENST00000456581 DCAF8L2P0C7V8 631 aa22.29■■□□□ 1.16
LINC00959-201ENST00000456581 SUPT5HO00267 1087 aaKnown RBP21.77■■□□□ 1.08
LINC00959-201ENST00000456581 DCAF1Q9Y4B6 1507 aa21.67■■□□□ 1.06
LINC00959-201ENST00000456581 ABCC9O60706 1549 aa21.58■■□□□ 1.04
LINC00959-201ENST00000456581 MYO15BQ96JP2 1530 aa21.5■■□□□ 1.03
LINC00959-201ENST00000456581 NACADO15069 1562 aa21.32■■□□□ 1
LINC00959-201ENST00000456581 SCRIBQ14160 1630 aa21.31■■□□□ 1
LINC00959-201ENST00000456581 RB1CC1Q8TDY2 1594 aa21.22■□□□□ 0.99
LINC00959-201ENST00000456581 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
LINC00959-201ENST00000456581 RSF1Q96T23 1441 aaPredicted RBP20.85■□□□□ 0.93
LINC00959-201ENST00000456581 CECR2Q9BXF3 1484 aa20.8■□□□□ 0.92
LINC00959-201ENST00000456581 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
LINC00959-201ENST00000456581 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.9
LINC00959-201ENST00000456581 PABPN1Q86U42 306 aaKnown RBP eCLIP20.59■□□□□ 0.89
LINC00959-201ENST00000456581 PCGF6Q9BYE7 350 aa20.59■□□□□ 0.89
LINC00959-201ENST00000456581 HRCP23327 699 aa20.57■□□□□ 0.88
LINC00959-201ENST00000456581 PPARGC1BQ86YN6 1023 aaKnown RBP20.57■□□□□ 0.88
LINC00959-201ENST00000456581 WIZO95785 1651 aa20.51■□□□□ 0.87
LINC00959-201ENST00000456581 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
LINC00959-201ENST00000456581 LOC105371045A0A1W2PR82 267 aa20.4■□□□□ 0.86
LINC00959-201ENST00000456581 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
LINC00959-201ENST00000456581 SMARCA4P51532 1647 aa20.29■□□□□ 0.84
LINC00959-201ENST00000456581 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
LINC00959-201ENST00000456581 FAM9AQ8IZU1 332 aaPredicted RBP20.16■□□□□ 0.82
LINC00959-201ENST00000456581 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
LINC00959-201ENST00000456581 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.81
LINC00959-201ENST00000456581 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
LINC00959-201ENST00000456581 SMARCA2P51531 1590 aa20.02■□□□□ 0.8
LINC00959-201ENST00000456581 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
LINC00959-201ENST00000456581 ABCC8Q09428 1581 aa19.92■□□□□ 0.78
LINC00959-201ENST00000456581 ATAD2BQ9ULI0 1458 aa19.91■□□□□ 0.78
LINC00959-201ENST00000456581 PEG3Q9GZU2 1588 aa19.87■□□□□ 0.77
LINC00959-201ENST00000456581 TRIM26Q12899 539 aaPredicted RBP19.83■□□□□ 0.77
LINC00959-201ENST00000456581 BAZ1BQ9UIG0 1483 aaKnown RBP19.81■□□□□ 0.76
LINC00959-201ENST00000456581 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
LINC00959-201ENST00000456581 SOGA1O94964 1423 aa19.64■□□□□ 0.73
LINC00959-201ENST00000456581 DNAJC5BQ9UF47 199 aa19.61■□□□□ 0.73
LINC00959-201ENST00000456581 RUSC2Q8N2Y8 1516 aa19.6■□□□□ 0.73
LINC00959-201ENST00000456581 NCAPD3P42695 1498 aa19.59■□□□□ 0.73
LINC00959-201ENST00000456581 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
LINC00959-201ENST00000456581 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.73
LINC00959-201ENST00000456581 SYNJ1O43426 1573 aa19.52■□□□□ 0.71
LINC00959-201ENST00000456581 CSRNP3Q8WYN3 585 aa19.45■□□□□ 0.7
LINC00959-201ENST00000456581 SCAF1Q9H7N4 1312 aaKnown RBP19.38■□□□□ 0.69
LINC00959-201ENST00000456581 UBTFP17480 764 aaKnown RBP19.37■□□□□ 0.69
LINC00959-201ENST00000456581 TTBK1Q5TCY1 1321 aaPredicted RBP19.33■□□□□ 0.69
LINC00959-201ENST00000456581 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
LINC00959-201ENST00000456581 EEA1Q15075 1411 aa19.3■□□□□ 0.68
LINC00959-201ENST00000456581 CFTRP13569 1480 aa19.29■□□□□ 0.68
LINC00959-201ENST00000456581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.28■□□□□ 0.68
LINC00959-201ENST00000456581 CEP162Q5TB80 1403 aa19.28■□□□□ 0.68
LINC00959-201ENST00000456581 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
LINC00959-201ENST00000456581 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
LINC00959-201ENST00000456581 CUX1P39880 1505 aa19.24■□□□□ 0.67
LINC00959-201ENST00000456581 RANGAP1P46060 587 aaPredicted RBP19.22■□□□□ 0.67
LINC00959-201ENST00000456581 GOLGA3Q08378 1498 aa19.21■□□□□ 0.67
LINC00959-201ENST00000456581 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
LINC00959-201ENST00000456581 BIVM-ERCC5R4GMW8 1640 aa19.18■□□□□ 0.66
LINC00959-201ENST00000456581 RAPGEF2Q9Y4G8 1499 aa19.16■□□□□ 0.66
LINC00959-201ENST00000456581 CEP164Q9UPV0 1460 aa19.14■□□□□ 0.66
LINC00959-201ENST00000456581 CCER1Q8TC90 406 aaPredicted RBP19.1■□□□□ 0.65
LINC00959-201ENST00000456581 NESP48681 1621 aa19.1■□□□□ 0.65
LINC00959-201ENST00000456581 LAMC3Q9Y6N6 1575 aa19.09■□□□□ 0.65
LINC00959-201ENST00000456581 KIF21BO75037 1637 aa19.09■□□□□ 0.65
LINC00959-201ENST00000456581 PRDM2Q13029 1718 aa19.04■□□□□ 0.64
LINC00959-201ENST00000456581 NEUROD1Q13562 356 aa19.03■□□□□ 0.64
LINC00959-201ENST00000456581 CLIP1P30622 1438 aa19.02■□□□□ 0.63
LINC00959-201ENST00000456581 FANCD2Q9BXW9 1451 aa19.01■□□□□ 0.63
LINC00959-201ENST00000456581 KIF27Q86VH2 1401 aa19■□□□□ 0.63
LINC00959-201ENST00000456581 PRXQ9BXM0 1461 aa18.97■□□□□ 0.63
LINC00959-201ENST00000456581 FGD5Q6ZNL6 1462 aa18.96■□□□□ 0.63
LINC00959-201ENST00000456581 CUX2O14529 1486 aa18.96■□□□□ 0.63
LINC00959-201ENST00000456581 IGF1RP08069 1367 aa18.88■□□□□ 0.61
LINC00959-201ENST00000456581 RAD54L2Q9Y4B4 1467 aa18.88■□□□□ 0.61
LINC00959-201ENST00000456581 ACIN1Q9UKV3 1341 aaKnown RBP18.87■□□□□ 0.61
LINC00959-201ENST00000456581 ERICH3Q5RHP9 1530 aa18.86■□□□□ 0.61
LINC00959-201ENST00000456581 VPS8Q8N3P4 1428 aa18.84■□□□□ 0.61
LINC00959-201ENST00000456581 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
LINC00959-201ENST00000456581 TOPBP1Q92547 1522 aa18.83■□□□□ 0.61
LINC00959-201ENST00000456581 GTF3C3Q9Y5Q9 886 aa18.82■□□□□ 0.6
LINC00959-201ENST00000456581 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
LINC00959-201ENST00000456581 POLA1P09884 1462 aaPredicted RBP18.8■□□□□ 0.6
LINC00959-201ENST00000456581 DNMBPQ6XZF7 1577 aa18.79■□□□□ 0.6
LINC00959-201ENST00000456581 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
LINC00959-201ENST00000456581 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
LINC00959-201ENST00000456581 URB2Q14146 1524 aaKnown RBP18.78■□□□□ 0.6
LINC00959-201ENST00000456581 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
LINC00959-201ENST00000456581 THOC2Q8NI27 1593 aaKnown RBP18.76■□□□□ 0.59
LINC00959-201ENST00000456581 APLP2Q06481 763 aa18.76■□□□□ 0.59
LINC00959-201ENST00000456581 YTHDC1Q96MU7 727 aaKnown RBP18.72■□□□□ 0.59
LINC00959-201ENST00000456581 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
LINC00959-201ENST00000456581 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
LINC00959-201ENST00000456581 HNRNPUL2Q1KMD3 747 aaKnown RBP18.7■□□□□ 0.58
LINC00959-201ENST00000456581 ARHGAP35Q9NRY4 1499 aa18.69■□□□□ 0.58
LINC00959-201ENST00000456581 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
LINC00959-201ENST00000456581 KANK4Q5T7N3 995 aaPredicted RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 159.8 ms