RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 NISCHQ9Y2I1 1504 aa26.52■■□□□ 1.84
LINC00959-201ENST00000456581 CCDC180Q9P1Z9 1646 aa22.8■■□□□ 1.24
LINC00959-201ENST00000456581 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
LINC00959-201ENST00000456581 ZCCHC6Q5VYS8 1495 aaKnown RBP22.33■■□□□ 1.16
LINC00959-201ENST00000456581 DCAF8L2P0C7V8 631 aa22.29■■□□□ 1.16
LINC00959-201ENST00000456581 SUPT5HO00267 1087 aaKnown RBP21.77■■□□□ 1.08
LINC00959-201ENST00000456581 DCAF1Q9Y4B6 1507 aa21.67■■□□□ 1.06
LINC00959-201ENST00000456581 ABCC9O60706 1549 aa21.58■■□□□ 1.04
LINC00959-201ENST00000456581 MYO15BQ96JP2 1530 aa21.5■■□□□ 1.03
LINC00959-201ENST00000456581 NACADO15069 1562 aa21.32■■□□□ 1
LINC00959-201ENST00000456581 SCRIBQ14160 1630 aa21.31■■□□□ 1
LINC00959-201ENST00000456581 RB1CC1Q8TDY2 1594 aa21.22■□□□□ 0.99
LINC00959-201ENST00000456581 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
LINC00959-201ENST00000456581 RSF1Q96T23 1441 aaPredicted RBP20.85■□□□□ 0.93
LINC00959-201ENST00000456581 CECR2Q9BXF3 1484 aa20.8■□□□□ 0.92
LINC00959-201ENST00000456581 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
LINC00959-201ENST00000456581 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.9
LINC00959-201ENST00000456581 PABPN1Q86U42 306 aaKnown RBP eCLIP20.59■□□□□ 0.89
LINC00959-201ENST00000456581 PCGF6Q9BYE7 350 aa20.59■□□□□ 0.89
LINC00959-201ENST00000456581 HRCP23327 699 aa20.57■□□□□ 0.88
LINC00959-201ENST00000456581 PPARGC1BQ86YN6 1023 aaKnown RBP20.57■□□□□ 0.88
LINC00959-201ENST00000456581 WIZO95785 1651 aa20.51■□□□□ 0.87
LINC00959-201ENST00000456581 BICRAQ9NZM4 1560 aa20.5■□□□□ 0.87
LINC00959-201ENST00000456581 LOC105371045A0A1W2PR82 267 aa20.4■□□□□ 0.86
LINC00959-201ENST00000456581 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
LINC00959-201ENST00000456581 SMARCA4P51532 1647 aa20.29■□□□□ 0.84
LINC00959-201ENST00000456581 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
LINC00959-201ENST00000456581 FAM9AQ8IZU1 332 aaPredicted RBP20.16■□□□□ 0.82
LINC00959-201ENST00000456581 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
LINC00959-201ENST00000456581 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.81
LINC00959-201ENST00000456581 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
LINC00959-201ENST00000456581 SMARCA2P51531 1590 aa20.02■□□□□ 0.8
LINC00959-201ENST00000456581 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
LINC00959-201ENST00000456581 ABCC8Q09428 1581 aa19.92■□□□□ 0.78
LINC00959-201ENST00000456581 ATAD2BQ9ULI0 1458 aa19.91■□□□□ 0.78
LINC00959-201ENST00000456581 PEG3Q9GZU2 1588 aa19.87■□□□□ 0.77
LINC00959-201ENST00000456581 TRIM26Q12899 539 aaPredicted RBP19.83■□□□□ 0.77
LINC00959-201ENST00000456581 BAZ1BQ9UIG0 1483 aaKnown RBP19.81■□□□□ 0.76
LINC00959-201ENST00000456581 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
LINC00959-201ENST00000456581 SOGA1O94964 1423 aa19.64■□□□□ 0.73
LINC00959-201ENST00000456581 DNAJC5BQ9UF47 199 aa19.61■□□□□ 0.73
LINC00959-201ENST00000456581 RUSC2Q8N2Y8 1516 aa19.6■□□□□ 0.73
LINC00959-201ENST00000456581 NCAPD3P42695 1498 aa19.59■□□□□ 0.73
LINC00959-201ENST00000456581 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
LINC00959-201ENST00000456581 WRNQ14191 1432 aaPredicted RBP eCLIP19.58■□□□□ 0.73
LINC00959-201ENST00000456581 SYNJ1O43426 1573 aa19.52■□□□□ 0.71
LINC00959-201ENST00000456581 CSRNP3Q8WYN3 585 aa19.45■□□□□ 0.7
LINC00959-201ENST00000456581 SCAF1Q9H7N4 1312 aaKnown RBP19.38■□□□□ 0.69
LINC00959-201ENST00000456581 UBTFP17480 764 aaKnown RBP19.37■□□□□ 0.69
LINC00959-201ENST00000456581 TTBK1Q5TCY1 1321 aaPredicted RBP19.33■□□□□ 0.69
LINC00959-201ENST00000456581 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
LINC00959-201ENST00000456581 EEA1Q15075 1411 aa19.3■□□□□ 0.68
LINC00959-201ENST00000456581 CFTRP13569 1480 aa19.29■□□□□ 0.68
LINC00959-201ENST00000456581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.28■□□□□ 0.68
LINC00959-201ENST00000456581 CEP162Q5TB80 1403 aa19.28■□□□□ 0.68
LINC00959-201ENST00000456581 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
LINC00959-201ENST00000456581 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
LINC00959-201ENST00000456581 CUX1P39880 1505 aa19.24■□□□□ 0.67
LINC00959-201ENST00000456581 RANGAP1P46060 587 aaPredicted RBP19.22■□□□□ 0.67
LINC00959-201ENST00000456581 GOLGA3Q08378 1498 aa19.21■□□□□ 0.67
LINC00959-201ENST00000456581 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
LINC00959-201ENST00000456581 BIVM-ERCC5R4GMW8 1640 aa19.18■□□□□ 0.66
LINC00959-201ENST00000456581 RAPGEF2Q9Y4G8 1499 aa19.16■□□□□ 0.66
LINC00959-201ENST00000456581 CEP164Q9UPV0 1460 aa19.14■□□□□ 0.66
LINC00959-201ENST00000456581 CCER1Q8TC90 406 aaPredicted RBP19.1■□□□□ 0.65
LINC00959-201ENST00000456581 NESP48681 1621 aa19.1■□□□□ 0.65
LINC00959-201ENST00000456581 LAMC3Q9Y6N6 1575 aa19.09■□□□□ 0.65
LINC00959-201ENST00000456581 KIF21BO75037 1637 aa19.09■□□□□ 0.65
LINC00959-201ENST00000456581 PRDM2Q13029 1718 aa19.04■□□□□ 0.64
LINC00959-201ENST00000456581 NEUROD1Q13562 356 aa19.03■□□□□ 0.64
LINC00959-201ENST00000456581 CLIP1P30622 1438 aa19.02■□□□□ 0.63
LINC00959-201ENST00000456581 FANCD2Q9BXW9 1451 aa19.01■□□□□ 0.63
LINC00959-201ENST00000456581 KIF27Q86VH2 1401 aa19■□□□□ 0.63
LINC00959-201ENST00000456581 PRXQ9BXM0 1461 aa18.97■□□□□ 0.63
LINC00959-201ENST00000456581 FGD5Q6ZNL6 1462 aa18.96■□□□□ 0.63
LINC00959-201ENST00000456581 CUX2O14529 1486 aa18.96■□□□□ 0.63
LINC00959-201ENST00000456581 IGF1RP08069 1367 aa18.88■□□□□ 0.61
LINC00959-201ENST00000456581 RAD54L2Q9Y4B4 1467 aa18.88■□□□□ 0.61
LINC00959-201ENST00000456581 ACIN1Q9UKV3 1341 aaKnown RBP18.87■□□□□ 0.61
LINC00959-201ENST00000456581 ERICH3Q5RHP9 1530 aa18.86■□□□□ 0.61
LINC00959-201ENST00000456581 VPS8Q8N3P4 1428 aa18.84■□□□□ 0.61
LINC00959-201ENST00000456581 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
LINC00959-201ENST00000456581 TOPBP1Q92547 1522 aa18.83■□□□□ 0.61
LINC00959-201ENST00000456581 GTF3C3Q9Y5Q9 886 aa18.82■□□□□ 0.6
LINC00959-201ENST00000456581 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
LINC00959-201ENST00000456581 POLA1P09884 1462 aaPredicted RBP18.8■□□□□ 0.6
LINC00959-201ENST00000456581 DNMBPQ6XZF7 1577 aa18.79■□□□□ 0.6
LINC00959-201ENST00000456581 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
LINC00959-201ENST00000456581 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
LINC00959-201ENST00000456581 URB2Q14146 1524 aaKnown RBP18.78■□□□□ 0.6
LINC00959-201ENST00000456581 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
LINC00959-201ENST00000456581 THOC2Q8NI27 1593 aaKnown RBP18.76■□□□□ 0.59
LINC00959-201ENST00000456581 APLP2Q06481 763 aa18.76■□□□□ 0.59
LINC00959-201ENST00000456581 YTHDC1Q96MU7 727 aaKnown RBP18.72■□□□□ 0.59
LINC00959-201ENST00000456581 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
LINC00959-201ENST00000456581 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
LINC00959-201ENST00000456581 HNRNPUL2Q1KMD3 747 aaKnown RBP18.7■□□□□ 0.58
LINC00959-201ENST00000456581 ARHGAP35Q9NRY4 1499 aa18.69■□□□□ 0.58
LINC00959-201ENST00000456581 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
LINC00959-201ENST00000456581 KANK4Q5T7N3 995 aaPredicted RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms