RNA–Protein interactions for RNA: ENST00000456174.6

HDAC9-218, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-218ENST00000456174 NISCHQ9Y2I1 1504 aa16.3■□□□□ 0.2
HDAC9-218ENST00000456174 CHIC1Q5VXU3 224 aa14.57□□□□□ -0.08
HDAC9-218ENST00000456174 AEBP2Q6ZN18 517 aaPredicted RBP14.38□□□□□ -0.11
HDAC9-218ENST00000456174 CCDC180Q9P1Z9 1646 aa14.18□□□□□ -0.14
HDAC9-218ENST00000456174 ZCCHC6Q5VYS8 1495 aaKnown RBP13.71□□□□□ -0.21
HDAC9-218ENST00000456174 DCAF8L2P0C7V8 631 aa13.48□□□□□ -0.25
HDAC9-218ENST00000456174 DCAF1Q9Y4B6 1507 aa13.46□□□□□ -0.26
HDAC9-218ENST00000456174 SHROOM4Q9ULL8 1493 aa13.41□□□□□ -0.26
HDAC9-218ENST00000456174 ABCC9O60706 1549 aa13.33□□□□□ -0.28
HDAC9-218ENST00000456174 PELP1Q8IZL8 1130 aaKnown RBP13.28□□□□□ -0.28
HDAC9-218ENST00000456174 MYO15BQ96JP2 1530 aa13.25□□□□□ -0.29
HDAC9-218ENST00000456174 NACADO15069 1562 aa13.17□□□□□ -0.3
HDAC9-218ENST00000456174 PHF23Q9BUL5 403 aaPredicted RBP13.11□□□□□ -0.31
HDAC9-218ENST00000456174 SCRIBQ14160 1630 aa13.08□□□□□ -0.32
HDAC9-218ENST00000456174 RB1CC1Q8TDY2 1594 aa13.05□□□□□ -0.32
HDAC9-218ENST00000456174 MYT1Q01538 1121 aa12.98□□□□□ -0.33
HDAC9-218ENST00000456174 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
HDAC9-218ENST00000456174 UNC13AQ9UPW8 1703 aa12.84□□□□□ -0.35
HDAC9-218ENST00000456174 HRCP23327 699 aa12.78□□□□□ -0.36
HDAC9-218ENST00000456174 RSF1Q96T23 1441 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-218ENST00000456174 CECR2Q9BXF3 1484 aa12.68□□□□□ -0.38
HDAC9-218ENST00000456174 BICRAQ9NZM4 1560 aa12.66□□□□□ -0.38
HDAC9-218ENST00000456174 MROH2BQ7Z745 1585 aa12.61□□□□□ -0.39
HDAC9-218ENST00000456174 PABPN1Q86U42 306 aaKnown RBP eCLIP12.6□□□□□ -0.39
HDAC9-218ENST00000456174 BAZ1AQ9NRL2 1556 aaPredicted RBP12.58□□□□□ -0.4
HDAC9-218ENST00000456174 WIZO95785 1651 aa12.54□□□□□ -0.4
HDAC9-218ENST00000456174 SMARCA4P51532 1647 aa12.53□□□□□ -0.4
HDAC9-218ENST00000456174 TTBK1Q5TCY1 1321 aaPredicted RBP12.42□□□□□ -0.42
HDAC9-218ENST00000456174 TOP2AP11388 1531 aaKnown RBP12.38□□□□□ -0.43
HDAC9-218ENST00000456174 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
HDAC9-218ENST00000456174 SCAF1Q9H7N4 1312 aaKnown RBP12.33□□□□□ -0.44
HDAC9-218ENST00000456174 PPARGC1BQ86YN6 1023 aaKnown RBP12.29□□□□□ -0.44
HDAC9-218ENST00000456174 SMARCA2P51531 1590 aa12.28□□□□□ -0.44
HDAC9-218ENST00000456174 ATAD2BQ9ULI0 1458 aa12.28□□□□□ -0.44
HDAC9-218ENST00000456174 EIF4G1Q04637 1599 aaKnown RBP12.27□□□□□ -0.45
HDAC9-218ENST00000456174 CCDC88BA6NC98 1476 aa12.26□□□□□ -0.45
HDAC9-218ENST00000456174 BAZ1BQ9UIG0 1483 aaKnown RBP12.23□□□□□ -0.45
HDAC9-218ENST00000456174 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
HDAC9-218ENST00000456174 TRIM41Q8WV44 630 aa12.15□□□□□ -0.46
HDAC9-218ENST00000456174 HMGXB3Q12766 1538 aa12.15□□□□□ -0.47
HDAC9-218ENST00000456174 NCAPD3P42695 1498 aa12.14□□□□□ -0.47
HDAC9-218ENST00000456174 PLPPR3Q6T4P5 718 aa12.11□□□□□ -0.47
HDAC9-218ENST00000456174 CC2D2AQ9P2K1 1620 aa12.07□□□□□ -0.48
HDAC9-218ENST00000456174 PCGF6Q9BYE7 350 aa12.06□□□□□ -0.48
HDAC9-218ENST00000456174 ABCC8Q09428 1581 aa12.06□□□□□ -0.48
HDAC9-218ENST00000456174 LOC105371045A0A1W2PR82 267 aa11.98□□□□□ -0.49
HDAC9-218ENST00000456174 FAM9AQ8IZU1 332 aaPredicted RBP11.95□□□□□ -0.5
HDAC9-218ENST00000456174 WRNQ14191 1432 aaPredicted RBP eCLIP11.94□□□□□ -0.5
HDAC9-218ENST00000456174 EHMT2Q96KQ7 1210 aa11.92□□□□□ -0.5
HDAC9-218ENST00000456174 PRDM2Q13029 1718 aa11.91□□□□□ -0.5
HDAC9-218ENST00000456174 CFTRP13569 1480 aa11.91□□□□□ -0.5
HDAC9-218ENST00000456174 SYNJ1O43426 1573 aa11.91□□□□□ -0.5
HDAC9-218ENST00000456174 ACIN1Q9UKV3 1341 aaKnown RBP11.9□□□□□ -0.5
HDAC9-218ENST00000456174 BCL11AQ9H165 835 aa11.87□□□□□ -0.51
HDAC9-218ENST00000456174 PRKCSHP14314 528 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-218ENST00000456174 ZEB1P37275 1124 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-218ENST00000456174 CADPSQ9ULU8 1353 aa11.85□□□□□ -0.51
HDAC9-218ENST00000456174 TOP2BQ02880 1626 aa11.84□□□□□ -0.51
HDAC9-218ENST00000456174 BIVM-ERCC5R4GMW8 1640 aa11.84□□□□□ -0.51
HDAC9-218ENST00000456174 SOGA1O94964 1423 aa11.83□□□□□ -0.51
HDAC9-218ENST00000456174 EEA1Q15075 1411 aa11.8□□□□□ -0.52
HDAC9-218ENST00000456174 RUSC2Q8N2Y8 1516 aa11.79□□□□□ -0.52
HDAC9-218ENST00000456174 CUX1P39880 1505 aa11.78□□□□□ -0.52
HDAC9-218ENST00000456174 CENPBP07199 599 aaPredicted RBP11.77□□□□□ -0.52
HDAC9-218ENST00000456174 NEUROD1Q13562 356 aa11.77□□□□□ -0.53
HDAC9-218ENST00000456174 SENP3Q9H4L4 574 aaPredicted RBP11.76□□□□□ -0.53
HDAC9-218ENST00000456174 CSRNP3Q8WYN3 585 aa11.75□□□□□ -0.53
HDAC9-218ENST00000456174 NESP48681 1621 aa11.74□□□□□ -0.53
HDAC9-218ENST00000456174 GTF3C3Q9Y5Q9 886 aa11.74□□□□□ -0.53
HDAC9-218ENST00000456174 DNAJC5BQ9UF47 199 aa11.74□□□□□ -0.53
HDAC9-218ENST00000456174 LAMC3Q9Y6N6 1575 aa11.73□□□□□ -0.53
HDAC9-218ENST00000456174 FANCD2Q9BXW9 1451 aa11.73□□□□□ -0.53
HDAC9-218ENST00000456174 KCNA4P22459 653 aa11.68□□□□□ -0.54
HDAC9-218ENST00000456174 TRIM26Q12899 539 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-218ENST00000456174 ERICH6Q7L0X2 663 aa11.68□□□□□ -0.54
HDAC9-218ENST00000456174 KIF21BO75037 1637 aa11.67□□□□□ -0.54
HDAC9-218ENST00000456174 ADRA2BP18089 450 aa11.67□□□□□ -0.54
HDAC9-218ENST00000456174 GOLGA3Q08378 1498 aa11.66□□□□□ -0.54
HDAC9-218ENST00000456174 CEP164Q9UPV0 1460 aa11.65□□□□□ -0.54
HDAC9-218ENST00000456174 DNMBPQ6XZF7 1577 aa11.64□□□□□ -0.55
HDAC9-218ENST00000456174 FGD5Q6ZNL6 1462 aa11.64□□□□□ -0.55
HDAC9-218ENST00000456174 TNIKQ9UKE5 1360 aa11.64□□□□□ -0.55
HDAC9-218ENST00000456174 APLP2Q06481 763 aa11.63□□□□□ -0.55
HDAC9-218ENST00000456174 KIF21AQ7Z4S6 1674 aa11.63□□□□□ -0.55
HDAC9-218ENST00000456174 PDS5BQ9NTI5 1447 aa11.63□□□□□ -0.55
HDAC9-218ENST00000456174 UBTFP17480 764 aaKnown RBP11.63□□□□□ -0.55
HDAC9-218ENST00000456174 KIF27Q86VH2 1401 aa11.62□□□□□ -0.55
HDAC9-218ENST00000456174 TOPBP1Q92547 1522 aa11.61□□□□□ -0.55
HDAC9-218ENST00000456174 CEP162Q5TB80 1403 aa11.59□□□□□ -0.55
HDAC9-218ENST00000456174 RAPGEF2Q9Y4G8 1499 aa11.59□□□□□ -0.55
HDAC9-218ENST00000456174 URB2Q14146 1524 aaKnown RBP11.58□□□□□ -0.56
HDAC9-218ENST00000456174 CUX2O14529 1486 aa11.58□□□□□ -0.56
HDAC9-218ENST00000456174 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
HDAC9-218ENST00000456174 ERICH3Q5RHP9 1530 aa11.56□□□□□ -0.56
HDAC9-218ENST00000456174 PRXQ9BXM0 1461 aa11.56□□□□□ -0.56
HDAC9-218ENST00000456174 ANP32EQ9BTT0 268 aa11.55□□□□□ -0.56
HDAC9-218ENST00000456174 RAD54L2Q9Y4B4 1467 aa11.54□□□□□ -0.56
HDAC9-218ENST00000456174 ABCA10Q8WWZ4 1543 aa11.53□□□□□ -0.56
HDAC9-218ENST00000456174 IGF1RP08069 1367 aa11.51□□□□□ -0.57
HDAC9-218ENST00000456174 WDR97A6NE52 1622 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms