RNA–Protein interactions for RNA: ENST00000448056.1

AC004540.1-206, humanhuman

TSL 3

Gene AC004540.1, Length 567 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-206ENST00000448056 AEBP2Q6ZN18 517 aaPredicted RBP19.35■□□□□ 0.69
AC004540.1-206ENST00000448056 CHIC1Q5VXU3 224 aa19.01■□□□□ 0.63
AC004540.1-206ENST00000448056 NISCHQ9Y2I1 1504 aa17.82■□□□□ 0.44
AC004540.1-206ENST00000448056 PHF23Q9BUL5 403 aaPredicted RBP16.75■□□□□ 0.27
AC004540.1-206ENST00000448056 SENP3Q9H4L4 574 aaPredicted RBP16.37■□□□□ 0.21
AC004540.1-206ENST00000448056 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
AC004540.1-206ENST00000448056 PLPPR3Q6T4P5 718 aa15.47■□□□□ 0.07
AC004540.1-206ENST00000448056 FOXD1Q16676 465 aa15.2■□□□□ 0.02
AC004540.1-206ENST00000448056 ABCC9O60706 1549 aa15.2■□□□□ 0.02
AC004540.1-206ENST00000448056 DCAF8L2P0C7V8 631 aa14.89□□□□□ -0.03
AC004540.1-206ENST00000448056 ZCCHC6Q5VYS8 1495 aaKnown RBP14.86□□□□□ -0.03
AC004540.1-206ENST00000448056 PPP6R1Q9UPN7 881 aa14.75□□□□□ -0.05
AC004540.1-206ENST00000448056 DCAF1Q9Y4B6 1507 aa14.73□□□□□ -0.05
AC004540.1-206ENST00000448056 NACADO15069 1562 aa14.73□□□□□ -0.05
AC004540.1-206ENST00000448056 MYO15BQ96JP2 1530 aa14.71□□□□□ -0.05
AC004540.1-206ENST00000448056 ADRA2BP18089 450 aa14.71□□□□□ -0.05
AC004540.1-206ENST00000448056 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
AC004540.1-206ENST00000448056 SCRIBQ14160 1630 aa14.34□□□□□ -0.11
AC004540.1-206ENST00000448056 PABPN1Q86U42 306 aaKnown RBP eCLIP14.31□□□□□ -0.12
AC004540.1-206ENST00000448056 PIAS4Q8N2W9 510 aaPredicted RBP14.31□□□□□ -0.12
AC004540.1-206ENST00000448056 UNC13AQ9UPW8 1703 aa14.28□□□□□ -0.12
AC004540.1-206ENST00000448056 SHROOM4Q9ULL8 1493 aa14.25□□□□□ -0.13
AC004540.1-206ENST00000448056 BICRAQ9NZM4 1560 aa14.23□□□□□ -0.13
AC004540.1-206ENST00000448056 MSH5O43196 834 aa13.95□□□□□ -0.18
AC004540.1-206ENST00000448056 CECR2Q9BXF3 1484 aa13.87□□□□□ -0.19
AC004540.1-206ENST00000448056 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.19
AC004540.1-206ENST00000448056 DNAJC5BQ9UF47 199 aa13.83□□□□□ -0.2
AC004540.1-206ENST00000448056 BAZ1AQ9NRL2 1556 aaPredicted RBP13.77□□□□□ -0.21
AC004540.1-206ENST00000448056 SMARCA4P51532 1647 aa13.74□□□□□ -0.21
AC004540.1-206ENST00000448056 MROH2BQ7Z745 1585 aa13.74□□□□□ -0.21
AC004540.1-206ENST00000448056 CC2D2AQ9P2K1 1620 aa13.72□□□□□ -0.21
AC004540.1-206ENST00000448056 RSF1Q96T23 1441 aaPredicted RBP13.69□□□□□ -0.22
AC004540.1-206ENST00000448056 ATAD2BQ9ULI0 1458 aa13.66□□□□□ -0.22
AC004540.1-206ENST00000448056 PPP4R3CPQ6ZMV5 832 aa13.65□□□□□ -0.22
AC004540.1-206ENST00000448056 NCAPD3P42695 1498 aa13.63□□□□□ -0.23
AC004540.1-206ENST00000448056 SMARCA2P51531 1590 aa13.62□□□□□ -0.23
AC004540.1-206ENST00000448056 PEG3Q9GZU2 1588 aa13.61□□□□□ -0.23
AC004540.1-206ENST00000448056 WIZO95785 1651 aa13.57□□□□□ -0.24
AC004540.1-206ENST00000448056 SUPT5HO00267 1087 aaKnown RBP13.56□□□□□ -0.24
AC004540.1-206ENST00000448056 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
AC004540.1-206ENST00000448056 HMGXB3Q12766 1538 aa13.52□□□□□ -0.25
AC004540.1-206ENST00000448056 KCNA4P22459 653 aa13.46□□□□□ -0.25
AC004540.1-206ENST00000448056 SCAF1Q9H7N4 1312 aaKnown RBP13.45□□□□□ -0.26
AC004540.1-206ENST00000448056 TOP2AP11388 1531 aaKnown RBP13.44□□□□□ -0.26
AC004540.1-206ENST00000448056 CCDC88BA6NC98 1476 aa13.34□□□□□ -0.27
AC004540.1-206ENST00000448056 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
AC004540.1-206ENST00000448056 NCBP3Q53F19 620 aaKnown RBP13.32□□□□□ -0.28
AC004540.1-206ENST00000448056 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
AC004540.1-206ENST00000448056 CNKSR2Q8WXI2 1034 aa13.25□□□□□ -0.29
AC004540.1-206ENST00000448056 NESP48681 1621 aa13.21□□□□□ -0.29
AC004540.1-206ENST00000448056 CFTRP13569 1480 aa13.2□□□□□ -0.3
AC004540.1-206ENST00000448056 LAMC3Q9Y6N6 1575 aa13.18□□□□□ -0.3
AC004540.1-206ENST00000448056 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
AC004540.1-206ENST00000448056 NPM3O75607 178 aaKnown RBP13.13□□□□□ -0.31
AC004540.1-206ENST00000448056 DMRT2Q9Y5R5 561 aa13.1□□□□□ -0.31
AC004540.1-206ENST00000448056 ERCC6Q03468 1493 aa13.07□□□□□ -0.32
AC004540.1-206ENST00000448056 FANCD2Q9BXW9 1451 aa13.07□□□□□ -0.32
AC004540.1-206ENST00000448056 CEP164Q9UPV0 1460 aa13.02□□□□□ -0.33
AC004540.1-206ENST00000448056 PRDM2Q13029 1718 aa12.99□□□□□ -0.33
AC004540.1-206ENST00000448056 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
AC004540.1-206ENST00000448056 RNF216Q9NWF9 866 aaPredicted RBP12.97□□□□□ -0.33
AC004540.1-206ENST00000448056 MRC2Q9UBG0 1479 aa12.95□□□□□ -0.34
AC004540.1-206ENST00000448056 URB2Q14146 1524 aaKnown RBP12.92□□□□□ -0.34
AC004540.1-206ENST00000448056 HOXD11P31277 338 aaPredicted RBP12.91□□□□□ -0.34
AC004540.1-206ENST00000448056 ABCC8Q09428 1581 aa12.9□□□□□ -0.34
AC004540.1-206ENST00000448056 THOC2Q8NI27 1593 aaKnown RBP12.9□□□□□ -0.35
AC004540.1-206ENST00000448056 WRNQ14191 1432 aaPredicted RBP eCLIP12.88□□□□□ -0.35
AC004540.1-206ENST00000448056 WDR62O43379 1518 aa12.88□□□□□ -0.35
AC004540.1-206ENST00000448056 TOPBP1Q92547 1522 aa12.88□□□□□ -0.35
AC004540.1-206ENST00000448056 CUX1P39880 1505 aa12.87□□□□□ -0.35
AC004540.1-206ENST00000448056 DNMBPQ6XZF7 1577 aa12.86□□□□□ -0.35
AC004540.1-206ENST00000448056 CUX2O14529 1486 aa12.85□□□□□ -0.35
AC004540.1-206ENST00000448056 SLC4A1APQ9BWU0 796 aaKnown RBP12.82□□□□□ -0.36
AC004540.1-206ENST00000448056 TRIM41Q8WV44 630 aa12.8□□□□□ -0.36
AC004540.1-206ENST00000448056 SYNJ1O43426 1573 aa12.8□□□□□ -0.36
AC004540.1-206ENST00000448056 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
AC004540.1-206ENST00000448056 SOGA1O94964 1423 aa12.79□□□□□ -0.36
AC004540.1-206ENST00000448056 POLA1P09884 1462 aaPredicted RBP12.78□□□□□ -0.36
AC004540.1-206ENST00000448056 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
AC004540.1-206ENST00000448056 BIVM-ERCC5R4GMW8 1640 aa12.76□□□□□ -0.37
AC004540.1-206ENST00000448056 IFT140Q96RY7 1462 aa12.75□□□□□ -0.37
AC004540.1-206ENST00000448056 RAD54L2Q9Y4B4 1467 aa12.75□□□□□ -0.37
AC004540.1-206ENST00000448056 TARBP1Q13395 1621 aaKnown RBP12.7□□□□□ -0.38
AC004540.1-206ENST00000448056 TDRD9Q8NDG6 1382 aaKnown RBP12.69□□□□□ -0.38
AC004540.1-206ENST00000448056 ZNF608Q9ULD9 1512 aaPredicted RBP12.68□□□□□ -0.38
AC004540.1-206ENST00000448056 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
AC004540.1-206ENST00000448056 AQRO60306 1485 aaKnown RBP eCLIP12.66□□□□□ -0.38
AC004540.1-206ENST00000448056 GAPVD1Q14C86 1478 aa12.61□□□□□ -0.39
AC004540.1-206ENST00000448056 DNAJC5Q9H3Z4 198 aa12.61□□□□□ -0.39
AC004540.1-206ENST00000448056 KIF27Q86VH2 1401 aa12.61□□□□□ -0.39
AC004540.1-206ENST00000448056 WDR97A6NE52 1622 aa12.59□□□□□ -0.39
AC004540.1-206ENST00000448056 IGF1RP08069 1367 aa12.57□□□□□ -0.4
AC004540.1-206ENST00000448056 EIF4G3O43432 1585 aaKnown RBP12.57□□□□□ -0.4
AC004540.1-206ENST00000448056 GRIN2BQ13224 1484 aa12.57□□□□□ -0.4
AC004540.1-206ENST00000448056 RUSC2Q8N2Y8 1516 aa12.57□□□□□ -0.4
AC004540.1-206ENST00000448056 ABCA5Q8WWZ7 1642 aa12.56□□□□□ -0.4
AC004540.1-206ENST00000448056 EHMT2Q96KQ7 1210 aa12.53□□□□□ -0.4
AC004540.1-206ENST00000448056 FAM9AQ8IZU1 332 aaPredicted RBP12.52□□□□□ -0.41
AC004540.1-206ENST00000448056 CSRNP3Q8WYN3 585 aa12.52□□□□□ -0.41
AC004540.1-206ENST00000448056 ERICH3Q5RHP9 1530 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms