RNA–Protein interactions for RNA: ENST00000447271.1

PTPN3-205, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 2

Gene PTPN3, Length 587 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-205ENST00000447271 AEBP2Q6ZN18 517 aaPredicted RBP19.71■□□□□ 0.75
PTPN3-205ENST00000447271 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
PTPN3-205ENST00000447271 SENP3Q9H4L4 574 aaPredicted RBP16.59■□□□□ 0.25
PTPN3-205ENST00000447271 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
PTPN3-205ENST00000447271 FOXD1Q16676 465 aa15.58■□□□□ 0.08
PTPN3-205ENST00000447271 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
PTPN3-205ENST00000447271 DNAJC5Q9H3Z4 198 aa15.03■□□□□ -0
PTPN3-205ENST00000447271 PLPPR3Q6T4P5 718 aa14.91□□□□□ -0.02
PTPN3-205ENST00000447271 PPP6R1Q9UPN7 881 aa14.72□□□□□ -0.05
PTPN3-205ENST00000447271 ADRA2BP18089 450 aa14.64□□□□□ -0.07
PTPN3-205ENST00000447271 ABCC9O60706 1549 aa14.61□□□□□ -0.07
PTPN3-205ENST00000447271 PIAS4Q8N2W9 510 aaPredicted RBP14.51□□□□□ -0.09
PTPN3-205ENST00000447271 MSH5O43196 834 aa14.38□□□□□ -0.11
PTPN3-205ENST00000447271 POTEDQ86YR6 584 aa13.98□□□□□ -0.17
PTPN3-205ENST00000447271 NISCHQ9Y2I1 1504 aa13.85□□□□□ -0.19
PTPN3-205ENST00000447271 TRIM41Q8WV44 630 aa13.8□□□□□ -0.2
PTPN3-205ENST00000447271 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
PTPN3-205ENST00000447271 PABPN1Q86U42 306 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPN3-205ENST00000447271 CECR2Q9BXF3 1484 aa13.29□□□□□ -0.28
PTPN3-205ENST00000447271 ILDR1Q86SU0 546 aaPredicted RBP13.24□□□□□ -0.29
PTPN3-205ENST00000447271 DMRT2Q9Y5R5 561 aa13.24□□□□□ -0.29
PTPN3-205ENST00000447271 CUX2O14529 1486 aa13.19□□□□□ -0.3
PTPN3-205ENST00000447271 RB1CC1Q8TDY2 1594 aa13.15□□□□□ -0.3
PTPN3-205ENST00000447271 PPP4R3CPQ6ZMV5 832 aa13.14□□□□□ -0.31
PTPN3-205ENST00000447271 SCAF1Q9H7N4 1312 aaKnown RBP13.13□□□□□ -0.31
PTPN3-205ENST00000447271 CC2D2AQ9P2K1 1620 aa13.1□□□□□ -0.31
PTPN3-205ENST00000447271 CCDC180Q9P1Z9 1646 aa12.99□□□□□ -0.33
PTPN3-205ENST00000447271 UNC13AQ9UPW8 1703 aa12.93□□□□□ -0.34
PTPN3-205ENST00000447271 BICRAQ9NZM4 1560 aa12.82□□□□□ -0.36
PTPN3-205ENST00000447271 CNKSR2Q8WXI2 1034 aa12.82□□□□□ -0.36
PTPN3-205ENST00000447271 HOXD11P31277 338 aaPredicted RBP12.79□□□□□ -0.36
PTPN3-205ENST00000447271 ERCC6Q03468 1493 aa12.73□□□□□ -0.37
PTPN3-205ENST00000447271 RNF216Q9NWF9 866 aaPredicted RBP12.68□□□□□ -0.38
PTPN3-205ENST00000447271 NACADO15069 1562 aa12.64□□□□□ -0.39
PTPN3-205ENST00000447271 EIF4G1Q04637 1599 aaKnown RBP12.64□□□□□ -0.39
PTPN3-205ENST00000447271 DCAF8L1A6NGE4 600 aa12.63□□□□□ -0.39
PTPN3-205ENST00000447271 TRHP20396 242 aaPredicted RBP12.63□□□□□ -0.39
PTPN3-205ENST00000447271 NPM3O75607 178 aaKnown RBP12.54□□□□□ -0.4
PTPN3-205ENST00000447271 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
PTPN3-205ENST00000447271 KCNA4P22459 653 aa12.44□□□□□ -0.42
PTPN3-205ENST00000447271 LMTK3Q96Q04 1460 aa12.41□□□□□ -0.42
PTPN3-205ENST00000447271 SHROOM4Q9ULL8 1493 aa12.4□□□□□ -0.42
PTPN3-205ENST00000447271 SOCS7O14512 581 aa12.4□□□□□ -0.42
PTPN3-205ENST00000447271 RIMBP3CA6NJZ7 1639 aa12.4□□□□□ -0.42
PTPN3-205ENST00000447271 RIMBP3BA6NNM3 1639 aa12.4□□□□□ -0.42
PTPN3-205ENST00000447271 RIMBP3Q9UFD9 1639 aa12.4□□□□□ -0.42
PTPN3-205ENST00000447271 RNF39Q9H2S5 420 aa12.38□□□□□ -0.43
PTPN3-205ENST00000447271 DCAF8L2P0C7V8 631 aa12.37□□□□□ -0.43
PTPN3-205ENST00000447271 OSCARQ8IYS5 282 aa12.35□□□□□ -0.43
PTPN3-205ENST00000447271 CACNB1Q02641 598 aaPredicted RBP12.29□□□□□ -0.44
PTPN3-205ENST00000447271 BAZ1AQ9NRL2 1556 aaPredicted RBP12.28□□□□□ -0.44
PTPN3-205ENST00000447271 THOC2Q8NI27 1593 aaKnown RBP12.26□□□□□ -0.45
PTPN3-205ENST00000447271 ILDR2Q71H61 639 aa12.22□□□□□ -0.45
PTPN3-205ENST00000447271 CYB5RLQ6IPT4 315 aa12.21□□□□□ -0.45
PTPN3-205ENST00000447271 FBXO41Q8TF61 875 aa12.19□□□□□ -0.46
PTPN3-205ENST00000447271 ARHGEF11O15085 1522 aa12.16□□□□□ -0.46
PTPN3-205ENST00000447271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.12□□□□□ -0.47
PTPN3-205ENST00000447271 C1QBPQ07021 282 aaKnown RBP12.11□□□□□ -0.47
PTPN3-205ENST00000447271 NESP48681 1621 aa12.08□□□□□ -0.48
PTPN3-205ENST00000447271 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
PTPN3-205ENST00000447271 ERCC6L2Q5T890 1561 aa12.01□□□□□ -0.49
PTPN3-205ENST00000447271 DISP3Q9P2K9 1392 aa12.01□□□□□ -0.49
PTPN3-205ENST00000447271 SLC4A2P04920 1241 aa12□□□□□ -0.49
PTPN3-205ENST00000447271 U3KPZ7 1027 aaPredicted RBP12□□□□□ -0.49
PTPN3-205ENST00000447271 KDM4FA0A1W2PPD8 638 aa11.94□□□□□ -0.5
PTPN3-205ENST00000447271 ARAP1Q96P48 1450 aa11.93□□□□□ -0.5
PTPN3-205ENST00000447271 KIF21AQ7Z4S6 1674 aa11.91□□□□□ -0.5
PTPN3-205ENST00000447271 SCRIBQ14160 1630 aa11.89□□□□□ -0.51
PTPN3-205ENST00000447271 MYO15BQ96JP2 1530 aa11.87□□□□□ -0.51
PTPN3-205ENST00000447271 HECW2Q9P2P5 1572 aa11.85□□□□□ -0.51
PTPN3-205ENST00000447271 SPINK5Q9NQ38 1064 aaPredicted RBP11.81□□□□□ -0.52
PTPN3-205ENST00000447271 LAMC3Q9Y6N6 1575 aa11.7□□□□□ -0.54
PTPN3-205ENST00000447271 WDR62O43379 1518 aa11.7□□□□□ -0.54
PTPN3-205ENST00000447271 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
PTPN3-205ENST00000447271 PDS5BQ9NTI5 1447 aa11.69□□□□□ -0.54
PTPN3-205ENST00000447271 SPATA31D1Q6ZQQ2 1576 aa11.68□□□□□ -0.54
PTPN3-205ENST00000447271 SYNJ2O15056 1496 aa11.68□□□□□ -0.54
PTPN3-205ENST00000447271 NCAPD3P42695 1498 aa11.68□□□□□ -0.54
PTPN3-205ENST00000447271 CAPN15O75808 1086 aa11.67□□□□□ -0.54
PTPN3-205ENST00000447271 SLC4A1APQ9BWU0 796 aaKnown RBP11.67□□□□□ -0.54
PTPN3-205ENST00000447271 DSG3P32926 999 aa11.64□□□□□ -0.55
PTPN3-205ENST00000447271 RSF1Q96T23 1441 aaPredicted RBP11.56□□□□□ -0.56
PTPN3-205ENST00000447271 ZBTB22O15209 634 aa11.52□□□□□ -0.57
PTPN3-205ENST00000447271 MYCNP04198 464 aaPredicted RBP11.5□□□□□ -0.57
PTPN3-205ENST00000447271 ABCB7O75027 752 aa11.49□□□□□ -0.57
PTPN3-205ENST00000447271 ADGRL1O94910 1474 aa11.47□□□□□ -0.57
PTPN3-205ENST00000447271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.47□□□□□ -0.57
PTPN3-205ENST00000447271 HNRNPUL2Q1KMD3 747 aaKnown RBP11.47□□□□□ -0.57
PTPN3-205ENST00000447271 SAMD1Q6SPF0 538 aaPredicted RBP11.47□□□□□ -0.57
PTPN3-205ENST00000447271 FOXD4L1Q9NU39 408 aa11.47□□□□□ -0.57
PTPN3-205ENST00000447271 HMGXB3Q12766 1538 aa11.45□□□□□ -0.58
PTPN3-205ENST00000447271 KIF13AQ9H1H9 1805 aa11.45□□□□□ -0.58
PTPN3-205ENST00000447271 CHD1O14646 1710 aa11.45□□□□□ -0.58
PTPN3-205ENST00000447271 ZNF219Q9P2Y4 722 aaPredicted RBP11.44□□□□□ -0.58
PTPN3-205ENST00000447271 ATAD2BQ9ULI0 1458 aa11.44□□□□□ -0.58
PTPN3-205ENST00000447271 APLP2Q06481 763 aa11.4□□□□□ -0.58
PTPN3-205ENST00000447271 ATF5Q9Y2D1 282 aaPredicted RBP11.4□□□□□ -0.58
PTPN3-205ENST00000447271 KDM6BO15054 1643 aa11.38□□□□□ -0.59
PTPN3-205ENST00000447271 CEP164Q9UPV0 1460 aa11.33□□□□□ -0.6
PTPN3-205ENST00000447271 FBLN2P98095 1184 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms