RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 AEBP2Q6ZN18 517 aaPredicted RBP23.57■■□□□ 1.36
CD44-211ENST00000442151 CHIC1Q5VXU3 224 aa22.17■■□□□ 1.14
CD44-211ENST00000442151 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
CD44-211ENST00000442151 PHF23Q9BUL5 403 aaPredicted RBP19.92■□□□□ 0.78
CD44-211ENST00000442151 POTEDQ86YR6 584 aa19.46■□□□□ 0.71
CD44-211ENST00000442151 FOXD1Q16676 465 aa19.04■□□□□ 0.64
CD44-211ENST00000442151 NISCHQ9Y2I1 1504 aa19.03■□□□□ 0.64
CD44-211ENST00000442151 MSH5O43196 834 aa18.34■□□□□ 0.53
CD44-211ENST00000442151 PIAS4Q8N2W9 510 aaPredicted RBP17.58■□□□□ 0.4
CD44-211ENST00000442151 CCDC180Q9P1Z9 1646 aa17.05■□□□□ 0.32
CD44-211ENST00000442151 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
CD44-211ENST00000442151 ABCC9O60706 1549 aa16.93■□□□□ 0.3
CD44-211ENST00000442151 ADRA2BP18089 450 aa16.88■□□□□ 0.29
CD44-211ENST00000442151 PLPPR3Q6T4P5 718 aa16.8■□□□□ 0.28
CD44-211ENST00000442151 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
CD44-211ENST00000442151 RB1CC1Q8TDY2 1594 aa16.24■□□□□ 0.19
CD44-211ENST00000442151 NACADO15069 1562 aa16.16■□□□□ 0.18
CD44-211ENST00000442151 DCAF8L2P0C7V8 631 aa16.13■□□□□ 0.17
CD44-211ENST00000442151 DMRT2Q9Y5R5 561 aa16.01■□□□□ 0.15
CD44-211ENST00000442151 MYO15BQ96JP2 1530 aa15.98■□□□□ 0.15
CD44-211ENST00000442151 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
CD44-211ENST00000442151 DCAF1Q9Y4B6 1507 aa15.79■□□□□ 0.12
CD44-211ENST00000442151 MAPK8IP2Q13387 824 aaPredicted RBP15.77■□□□□ 0.11
CD44-211ENST00000442151 ZCCHC6Q5VYS8 1495 aaKnown RBP15.76■□□□□ 0.11
CD44-211ENST00000442151 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
CD44-211ENST00000442151 UNC13AQ9UPW8 1703 aa15.68■□□□□ 0.1
CD44-211ENST00000442151 SCAF1Q9H7N4 1312 aaKnown RBP15.64■□□□□ 0.09
CD44-211ENST00000442151 SHROOM4Q9ULL8 1493 aa15.62■□□□□ 0.09
CD44-211ENST00000442151 BICRAQ9NZM4 1560 aa15.62■□□□□ 0.09
CD44-211ENST00000442151 RNF39Q9H2S5 420 aa15.48■□□□□ 0.07
CD44-211ENST00000442151 SCRIBQ14160 1630 aa15.46■□□□□ 0.07
CD44-211ENST00000442151 DCAF8L1A6NGE4 600 aa15.33■□□□□ 0.05
CD44-211ENST00000442151 CC2D2AQ9P2K1 1620 aa15.29■□□□□ 0.04
CD44-211ENST00000442151 EIF4G1Q04637 1599 aaKnown RBP15.29■□□□□ 0.04
CD44-211ENST00000442151 CECR2Q9BXF3 1484 aa15.29■□□□□ 0.04
CD44-211ENST00000442151 C1QBPQ07021 282 aaKnown RBP15.27■□□□□ 0.03
CD44-211ENST00000442151 POTEHQ6S545 545 aa15.08■□□□□ 0.01
CD44-211ENST00000442151 HOXD11P31277 338 aaPredicted RBP15.04■□□□□ -0
CD44-211ENST00000442151 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
CD44-211ENST00000442151 SMARCA2P51531 1590 aa14.85□□□□□ -0.03
CD44-211ENST00000442151 ATAD2BQ9ULI0 1458 aa14.83□□□□□ -0.04
CD44-211ENST00000442151 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
CD44-211ENST00000442151 SMARCA4P51532 1647 aa14.79□□□□□ -0.04
CD44-211ENST00000442151 HMGXB3Q12766 1538 aa14.77□□□□□ -0.05
CD44-211ENST00000442151 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
CD44-211ENST00000442151 ERCC6Q03468 1493 aa14.71□□□□□ -0.06
CD44-211ENST00000442151 PEG3Q9GZU2 1588 aa14.68□□□□□ -0.06
CD44-211ENST00000442151 RNF216Q9NWF9 866 aaPredicted RBP14.67□□□□□ -0.06
CD44-211ENST00000442151 CUX2O14529 1486 aa14.66□□□□□ -0.06
CD44-211ENST00000442151 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
CD44-211ENST00000442151 DNAJC5Q9H3Z4 198 aa14.57□□□□□ -0.08
CD44-211ENST00000442151 CNKSR2Q8WXI2 1034 aa14.55□□□□□ -0.08
CD44-211ENST00000442151 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
CD44-211ENST00000442151 PDS5BQ9NTI5 1447 aa14.54□□□□□ -0.08
CD44-211ENST00000442151 PPP4R3CPQ6ZMV5 832 aa14.54□□□□□ -0.08
CD44-211ENST00000442151 NESP48681 1621 aa14.51□□□□□ -0.09
CD44-211ENST00000442151 CADPSQ9ULU8 1353 aa14.47□□□□□ -0.09
CD44-211ENST00000442151 WIZO95785 1651 aa14.41□□□□□ -0.1
CD44-211ENST00000442151 RSF1Q96T23 1441 aaPredicted RBP14.38□□□□□ -0.11
CD44-211ENST00000442151 THOC2Q8NI27 1593 aaKnown RBP14.35□□□□□ -0.11
CD44-211ENST00000442151 MRC2Q9UBG0 1479 aa14.32□□□□□ -0.12
CD44-211ENST00000442151 KIF21AQ7Z4S6 1674 aa14.32□□□□□ -0.12
CD44-211ENST00000442151 TOP2AP11388 1531 aaKnown RBP14.31□□□□□ -0.12
CD44-211ENST00000442151 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.31□□□□□ -0.12
CD44-211ENST00000442151 CEP164Q9UPV0 1460 aa14.29□□□□□ -0.12
CD44-211ENST00000442151 CFTRP13569 1480 aa14.28□□□□□ -0.12
CD44-211ENST00000442151 FANCD2Q9BXW9 1451 aa14.26□□□□□ -0.13
CD44-211ENST00000442151 WDR62O43379 1518 aa14.24□□□□□ -0.13
CD44-211ENST00000442151 DSG3P32926 999 aa14.15□□□□□ -0.14
CD44-211ENST00000442151 CCDC88BA6NC98 1476 aa14.14□□□□□ -0.15
CD44-211ENST00000442151 ABCC8Q09428 1581 aa14.12□□□□□ -0.15
CD44-211ENST00000442151 PRDM2Q13029 1718 aa14.09□□□□□ -0.15
CD44-211ENST00000442151 OSCARQ8IYS5 282 aa14.08□□□□□ -0.16
CD44-211ENST00000442151 URB2Q14146 1524 aaKnown RBP14.07□□□□□ -0.16
CD44-211ENST00000442151 IFT140Q96RY7 1462 aa14.03□□□□□ -0.16
CD44-211ENST00000442151 CAPN15O75808 1086 aa13.99□□□□□ -0.17
CD44-211ENST00000442151 TOPBP1Q92547 1522 aa13.98□□□□□ -0.17
CD44-211ENST00000442151 DNMBPQ6XZF7 1577 aa13.95□□□□□ -0.18
CD44-211ENST00000442151 TRIM41Q8WV44 630 aa13.94□□□□□ -0.18
CD44-211ENST00000442151 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
CD44-211ENST00000442151 ZNF608Q9ULD9 1512 aaPredicted RBP13.87□□□□□ -0.19
CD44-211ENST00000442151 SUPT5HO00267 1087 aaKnown RBP13.86□□□□□ -0.19
CD44-211ENST00000442151 U3KPZ7 1027 aaPredicted RBP13.86□□□□□ -0.19
CD44-211ENST00000442151 SOGA1O94964 1423 aa13.85□□□□□ -0.19
CD44-211ENST00000442151 POLA1P09884 1462 aaPredicted RBP13.82□□□□□ -0.2
CD44-211ENST00000442151 WDR97A6NE52 1622 aa13.81□□□□□ -0.2
CD44-211ENST00000442151 FBLN2P98095 1184 aa13.8□□□□□ -0.2
CD44-211ENST00000442151 TARBP1Q13395 1621 aaKnown RBP13.8□□□□□ -0.2
CD44-211ENST00000442151 EIF4G3O43432 1585 aaKnown RBP13.8□□□□□ -0.2
CD44-211ENST00000442151 AQRO60306 1485 aaKnown RBP eCLIP13.8□□□□□ -0.2
CD44-211ENST00000442151 NCBP3Q53F19 620 aaKnown RBP13.78□□□□□ -0.2
CD44-211ENST00000442151 FGD5Q6ZNL6 1462 aa13.76□□□□□ -0.21
CD44-211ENST00000442151 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
CD44-211ENST00000442151 TDRD9Q8NDG6 1382 aaKnown RBP13.75□□□□□ -0.21
CD44-211ENST00000442151 RAD54L2Q9Y4B4 1467 aa13.75□□□□□ -0.21
CD44-211ENST00000442151 CUX1P39880 1505 aa13.73□□□□□ -0.21
CD44-211ENST00000442151 GRIN2BQ13224 1484 aa13.71□□□□□ -0.21
CD44-211ENST00000442151 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.21
CD44-211ENST00000442151 RIMBP3CA6NJZ7 1639 aa13.7□□□□□ -0.22
CD44-211ENST00000442151 RIMBP3BA6NNM3 1639 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms