RNA–Protein interactions for RNA: ENST00000438412.5

HCG18-236, Transcript of HLA complex group 18, humanhuman

TSL 2 BASIC

Gene HCG18, Length 2,440 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG18-236ENST00000438412 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
HCG18-236ENST00000438412 SHROOM4Q9ULL8 1493 aa23.16■■□□□ 1.3
HCG18-236ENST00000438412 CCDC180Q9P1Z9 1646 aa23■■□□□ 1.27
HCG18-236ENST00000438412 ZCCHC6Q5VYS8 1495 aaKnown RBP22.82■■□□□ 1.24
HCG18-236ENST00000438412 DCAF8L2P0C7V8 631 aa22.74■■□□□ 1.23
HCG18-236ENST00000438412 SUPT5HO00267 1087 aaKnown RBP22.52■■□□□ 1.2
HCG18-236ENST00000438412 DCAF1Q9Y4B6 1507 aa22.02■■□□□ 1.12
HCG18-236ENST00000438412 ABCC9O60706 1549 aa21.8■■□□□ 1.08
HCG18-236ENST00000438412 SCRIBQ14160 1630 aa21.76■■□□□ 1.07
HCG18-236ENST00000438412 CHIC1Q5VXU3 224 aa21.66■■□□□ 1.06
HCG18-236ENST00000438412 MYO15BQ96JP2 1530 aa21.64■■□□□ 1.05
HCG18-236ENST00000438412 RSF1Q96T23 1441 aaPredicted RBP21.35■■□□□ 1.01
HCG18-236ENST00000438412 NACADO15069 1562 aa21.33■■□□□ 1.01
HCG18-236ENST00000438412 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
HCG18-236ENST00000438412 RB1CC1Q8TDY2 1594 aa21.18■□□□□ 0.98
HCG18-236ENST00000438412 LOC105371045A0A1W2PR82 267 aa21.16■□□□□ 0.98
HCG18-236ENST00000438412 MROH2BQ7Z745 1585 aa21.11■□□□□ 0.97
HCG18-236ENST00000438412 WIZO95785 1651 aa21.01■□□□□ 0.95
HCG18-236ENST00000438412 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
HCG18-236ENST00000438412 FAM9AQ8IZU1 332 aaPredicted RBP20.88■□□□□ 0.93
HCG18-236ENST00000438412 TRIM41Q8WV44 630 aa20.87■□□□□ 0.93
HCG18-236ENST00000438412 PABPN1Q86U42 306 aaKnown RBP eCLIP20.86■□□□□ 0.93
HCG18-236ENST00000438412 EHMT2Q96KQ7 1210 aa20.86■□□□□ 0.93
HCG18-236ENST00000438412 PCGF6Q9BYE7 350 aa20.82■□□□□ 0.92
HCG18-236ENST00000438412 BAZ1AQ9NRL2 1556 aaPredicted RBP20.75■□□□□ 0.91
HCG18-236ENST00000438412 SMARCA4P51532 1647 aa20.67■□□□□ 0.9
HCG18-236ENST00000438412 BICRAQ9NZM4 1560 aa20.63■□□□□ 0.89
HCG18-236ENST00000438412 TOP2AP11388 1531 aaKnown RBP20.54■□□□□ 0.88
HCG18-236ENST00000438412 CCDC88BA6NC98 1476 aa20.53■□□□□ 0.88
HCG18-236ENST00000438412 EIF4G1Q04637 1599 aaKnown RBP20.53■□□□□ 0.88
HCG18-236ENST00000438412 ABCC8Q09428 1581 aa20.5■□□□□ 0.87
HCG18-236ENST00000438412 HRCP23327 699 aa20.49■□□□□ 0.87
HCG18-236ENST00000438412 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
HCG18-236ENST00000438412 PPARGC1BQ86YN6 1023 aaKnown RBP20.38■□□□□ 0.85
HCG18-236ENST00000438412 TRIM26Q12899 539 aaPredicted RBP20.29■□□□□ 0.84
HCG18-236ENST00000438412 SOGA1O94964 1423 aa20.23■□□□□ 0.83
HCG18-236ENST00000438412 ATAD2BQ9ULI0 1458 aa20.2■□□□□ 0.82
HCG18-236ENST00000438412 RUSC2Q8N2Y8 1516 aa20.19■□□□□ 0.82
HCG18-236ENST00000438412 PEG3Q9GZU2 1588 aa20.18■□□□□ 0.82
HCG18-236ENST00000438412 BAZ1BQ9UIG0 1483 aaKnown RBP20.13■□□□□ 0.81
HCG18-236ENST00000438412 TTBK1Q5TCY1 1321 aaPredicted RBP20.09■□□□□ 0.81
HCG18-236ENST00000438412 WRNQ14191 1432 aaPredicted RBP eCLIP20.04■□□□□ 0.8
HCG18-236ENST00000438412 SYNJ1O43426 1573 aa20.03■□□□□ 0.8
HCG18-236ENST00000438412 CSRNP3Q8WYN3 585 aa19.97■□□□□ 0.79
HCG18-236ENST00000438412 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
HCG18-236ENST00000438412 CEP162Q5TB80 1403 aa19.93■□□□□ 0.78
HCG18-236ENST00000438412 RANGAP1P46060 587 aaPredicted RBP19.84■□□□□ 0.77
HCG18-236ENST00000438412 TNIKQ9UKE5 1360 aa19.82■□□□□ 0.76
HCG18-236ENST00000438412 EEA1Q15075 1411 aa19.79■□□□□ 0.76
HCG18-236ENST00000438412 NCAPD3P42695 1498 aa19.78■□□□□ 0.76
HCG18-236ENST00000438412 GOLGA3Q08378 1498 aa19.77■□□□□ 0.76
HCG18-236ENST00000438412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.75■□□□□ 0.75
HCG18-236ENST00000438412 HMGXB3Q12766 1538 aa19.73■□□□□ 0.75
HCG18-236ENST00000438412 RAPGEF2Q9Y4G8 1499 aa19.72■□□□□ 0.75
HCG18-236ENST00000438412 TOP2BQ02880 1626 aa19.7■□□□□ 0.74
HCG18-236ENST00000438412 CEP164Q9UPV0 1460 aa19.67■□□□□ 0.74
HCG18-236ENST00000438412 CUX1P39880 1505 aa19.65■□□□□ 0.74
HCG18-236ENST00000438412 KIF21BO75037 1637 aa19.64■□□□□ 0.73
HCG18-236ENST00000438412 BIVM-ERCC5R4GMW8 1640 aa19.61■□□□□ 0.73
HCG18-236ENST00000438412 CLIP1P30622 1438 aa19.6■□□□□ 0.73
HCG18-236ENST00000438412 CFTRP13569 1480 aa19.59■□□□□ 0.73
HCG18-236ENST00000438412 ZEB1P37275 1124 aaPredicted RBP19.57■□□□□ 0.72
HCG18-236ENST00000438412 CCER1Q8TC90 406 aaPredicted RBP19.56■□□□□ 0.72
HCG18-236ENST00000438412 CC2D2AQ9P2K1 1620 aa19.55■□□□□ 0.72
HCG18-236ENST00000438412 PRXQ9BXM0 1461 aa19.44■□□□□ 0.7
HCG18-236ENST00000438412 VPS8Q8N3P4 1428 aa19.44■□□□□ 0.7
HCG18-236ENST00000438412 HNRNPUL2Q1KMD3 747 aaKnown RBP19.43■□□□□ 0.7
HCG18-236ENST00000438412 CADPSQ9ULU8 1353 aa19.43■□□□□ 0.7
HCG18-236ENST00000438412 KIF27Q86VH2 1401 aa19.4■□□□□ 0.7
HCG18-236ENST00000438412 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
HCG18-236ENST00000438412 NESP48681 1621 aa19.38■□□□□ 0.69
HCG18-236ENST00000438412 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
HCG18-236ENST00000438412 CUX2O14529 1486 aa19.36■□□□□ 0.69
HCG18-236ENST00000438412 ARAP1Q96P48 1450 aa19.34■□□□□ 0.69
HCG18-236ENST00000438412 ERICH3Q5RHP9 1530 aa19.34■□□□□ 0.69
HCG18-236ENST00000438412 FGD5Q6ZNL6 1462 aa19.33■□□□□ 0.69
HCG18-236ENST00000438412 APLP2Q06481 763 aa19.33■□□□□ 0.68
HCG18-236ENST00000438412 KANK4Q5T7N3 995 aaPredicted RBP19.3■□□□□ 0.68
HCG18-236ENST00000438412 FANCD2Q9BXW9 1451 aa19.29■□□□□ 0.68
HCG18-236ENST00000438412 IGF1RP08069 1367 aa19.27■□□□□ 0.68
HCG18-236ENST00000438412 RAD54L2Q9Y4B4 1467 aa19.25■□□□□ 0.67
HCG18-236ENST00000438412 ARHGAP35Q9NRY4 1499 aa19.22■□□□□ 0.67
HCG18-236ENST00000438412 CARMIL1Q5VZK9 1371 aa19.17■□□□□ 0.66
HCG18-236ENST00000438412 P3H3Q8IVL6 736 aa19.17■□□□□ 0.66
HCG18-236ENST00000438412 POLA1P09884 1462 aaPredicted RBP19.13■□□□□ 0.65
HCG18-236ENST00000438412 TOPBP1Q92547 1522 aa19.13■□□□□ 0.65
HCG18-236ENST00000438412 DNMBPQ6XZF7 1577 aa19.09■□□□□ 0.65
HCG18-236ENST00000438412 ITGAEP38570 1179 aa19.07■□□□□ 0.64
HCG18-236ENST00000438412 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
HCG18-236ENST00000438412 ATP1B4Q9UN42 357 aaPredicted RBP19.03■□□□□ 0.64
HCG18-236ENST00000438412 TDRD9Q8NDG6 1382 aaKnown RBP19.02■□□□□ 0.64
HCG18-236ENST00000438412 ABCA10Q8WWZ4 1543 aa19.01■□□□□ 0.63
HCG18-236ENST00000438412 DIEXFQ68CQ4 756 aaKnown RBP19■□□□□ 0.63
HCG18-236ENST00000438412 FHOD3Q2V2M9 1422 aa18.98■□□□□ 0.63
HCG18-236ENST00000438412 KIF21AQ7Z4S6 1674 aa18.97■□□□□ 0.63
HCG18-236ENST00000438412 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
HCG18-236ENST00000438412 RRBP1Q9P2E9 1410 aaKnown RBP18.92■□□□□ 0.62
HCG18-236ENST00000438412 PCF11O94913 1555 aaKnown RBP18.92■□□□□ 0.62
HCG18-236ENST00000438412 TIAM1Q13009 1591 aa18.91■□□□□ 0.62
HCG18-236ENST00000438412 CCNB3Q8WWL7 1395 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms