RNA–Protein interactions for RNA: ENST00000432645.6

HDAC9-212, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,099 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-212ENST00000432645 NISCHQ9Y2I1 1504 aa18.01■□□□□ 0.47
HDAC9-212ENST00000432645 CCDC180Q9P1Z9 1646 aa15.42■□□□□ 0.06
HDAC9-212ENST00000432645 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
HDAC9-212ENST00000432645 DCAF8L2P0C7V8 631 aa15.15■□□□□ 0.02
HDAC9-212ENST00000432645 ZCCHC6Q5VYS8 1495 aaKnown RBP15.15■□□□□ 0.02
HDAC9-212ENST00000432645 DCAF1Q9Y4B6 1507 aa14.74□□□□□ -0.05
HDAC9-212ENST00000432645 SUPT5HO00267 1087 aaKnown RBP14.73□□□□□ -0.05
HDAC9-212ENST00000432645 ABCC9O60706 1549 aa14.67□□□□□ -0.06
HDAC9-212ENST00000432645 SCRIBQ14160 1630 aa14.46□□□□□ -0.1
HDAC9-212ENST00000432645 MYO15BQ96JP2 1530 aa14.44□□□□□ -0.1
HDAC9-212ENST00000432645 NACADO15069 1562 aa14.37□□□□□ -0.11
HDAC9-212ENST00000432645 RB1CC1Q8TDY2 1594 aa14.22□□□□□ -0.13
HDAC9-212ENST00000432645 RSF1Q96T23 1441 aaPredicted RBP14.13□□□□□ -0.15
HDAC9-212ENST00000432645 CHIC1Q5VXU3 224 aa14.11□□□□□ -0.15
HDAC9-212ENST00000432645 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
HDAC9-212ENST00000432645 PABPN1Q86U42 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
HDAC9-212ENST00000432645 MROH2BQ7Z745 1585 aa13.99□□□□□ -0.17
HDAC9-212ENST00000432645 UNC13AQ9UPW8 1703 aa13.95□□□□□ -0.18
HDAC9-212ENST00000432645 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
HDAC9-212ENST00000432645 WIZO95785 1651 aa13.89□□□□□ -0.19
HDAC9-212ENST00000432645 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
HDAC9-212ENST00000432645 BICRAQ9NZM4 1560 aa13.83□□□□□ -0.2
HDAC9-212ENST00000432645 SMARCA4P51532 1647 aa13.77□□□□□ -0.2
HDAC9-212ENST00000432645 MYT1Q01538 1121 aa13.77□□□□□ -0.2
HDAC9-212ENST00000432645 TRIM41Q8WV44 630 aa13.74□□□□□ -0.21
HDAC9-212ENST00000432645 LOC105371045A0A1W2PR82 267 aa13.72□□□□□ -0.21
HDAC9-212ENST00000432645 TOP2AP11388 1531 aaKnown RBP13.66□□□□□ -0.22
HDAC9-212ENST00000432645 FAM9AQ8IZU1 332 aaPredicted RBP13.64□□□□□ -0.23
HDAC9-212ENST00000432645 CCDC88BA6NC98 1476 aa13.62□□□□□ -0.23
HDAC9-212ENST00000432645 AEBP2Q6ZN18 517 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-212ENST00000432645 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
HDAC9-212ENST00000432645 EHMT2Q96KQ7 1210 aa13.56□□□□□ -0.24
HDAC9-212ENST00000432645 ATAD2BQ9ULI0 1458 aa13.53□□□□□ -0.24
HDAC9-212ENST00000432645 PEG3Q9GZU2 1588 aa13.5□□□□□ -0.25
HDAC9-212ENST00000432645 EIF4G1Q04637 1599 aaKnown RBP13.5□□□□□ -0.25
HDAC9-212ENST00000432645 BAZ1BQ9UIG0 1483 aaKnown RBP13.48□□□□□ -0.25
HDAC9-212ENST00000432645 ABCC8Q09428 1581 aa13.47□□□□□ -0.25
HDAC9-212ENST00000432645 TTBK1Q5TCY1 1321 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-212ENST00000432645 PCGF6Q9BYE7 350 aa13.36□□□□□ -0.27
HDAC9-212ENST00000432645 NCAPD3P42695 1498 aa13.32□□□□□ -0.28
HDAC9-212ENST00000432645 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
HDAC9-212ENST00000432645 SOGA1O94964 1423 aa13.29□□□□□ -0.28
HDAC9-212ENST00000432645 HMGXB3Q12766 1538 aa13.26□□□□□ -0.29
HDAC9-212ENST00000432645 RUSC2Q8N2Y8 1516 aa13.24□□□□□ -0.29
HDAC9-212ENST00000432645 SYNJ1O43426 1573 aa13.22□□□□□ -0.29
HDAC9-212ENST00000432645 CSRNP3Q8WYN3 585 aa13.2□□□□□ -0.3
HDAC9-212ENST00000432645 CC2D2AQ9P2K1 1620 aa13.18□□□□□ -0.3
HDAC9-212ENST00000432645 UBTFP17480 764 aaKnown RBP13.15□□□□□ -0.3
HDAC9-212ENST00000432645 TRIM26Q12899 539 aaPredicted RBP13.15□□□□□ -0.3
HDAC9-212ENST00000432645 PPARGC1BQ86YN6 1023 aaKnown RBP13.15□□□□□ -0.3
HDAC9-212ENST00000432645 EEA1Q15075 1411 aa13.13□□□□□ -0.31
HDAC9-212ENST00000432645 CFTRP13569 1480 aa13.12□□□□□ -0.31
HDAC9-212ENST00000432645 HRCP23327 699 aa13.11□□□□□ -0.31
HDAC9-212ENST00000432645 TOP2BQ02880 1626 aa13.07□□□□□ -0.32
HDAC9-212ENST00000432645 CADPSQ9ULU8 1353 aa13.06□□□□□ -0.32
HDAC9-212ENST00000432645 CEP162Q5TB80 1403 aa13.06□□□□□ -0.32
HDAC9-212ENST00000432645 TNIKQ9UKE5 1360 aa13.05□□□□□ -0.32
HDAC9-212ENST00000432645 CUX1P39880 1505 aa13.04□□□□□ -0.32
HDAC9-212ENST00000432645 GOLGA3Q08378 1498 aa13.04□□□□□ -0.32
HDAC9-212ENST00000432645 PRKCSHP14314 528 aaPredicted RBP13.02□□□□□ -0.32
HDAC9-212ENST00000432645 RANGAP1P46060 587 aaPredicted RBP13.02□□□□□ -0.32
HDAC9-212ENST00000432645 BIVM-ERCC5R4GMW8 1640 aa13.01□□□□□ -0.33
HDAC9-212ENST00000432645 DNAJC5BQ9UF47 199 aa13.01□□□□□ -0.33
HDAC9-212ENST00000432645 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
HDAC9-212ENST00000432645 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
HDAC9-212ENST00000432645 RAPGEF2Q9Y4G8 1499 aa12.98□□□□□ -0.33
HDAC9-212ENST00000432645 NESP48681 1621 aa12.96□□□□□ -0.34
HDAC9-212ENST00000432645 KIF21BO75037 1637 aa12.94□□□□□ -0.34
HDAC9-212ENST00000432645 FANCD2Q9BXW9 1451 aa12.93□□□□□ -0.34
HDAC9-212ENST00000432645 KIF27Q86VH2 1401 aa12.91□□□□□ -0.34
HDAC9-212ENST00000432645 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
HDAC9-212ENST00000432645 CLIP1P30622 1438 aa12.9□□□□□ -0.35
HDAC9-212ENST00000432645 FGD5Q6ZNL6 1462 aa12.88□□□□□ -0.35
HDAC9-212ENST00000432645 CUX2O14529 1486 aa12.87□□□□□ -0.35
HDAC9-212ENST00000432645 PRXQ9BXM0 1461 aa12.87□□□□□ -0.35
HDAC9-212ENST00000432645 APLP2Q06481 763 aa12.83□□□□□ -0.36
HDAC9-212ENST00000432645 IGF1RP08069 1367 aa12.81□□□□□ -0.36
HDAC9-212ENST00000432645 RAD54L2Q9Y4B4 1467 aa12.81□□□□□ -0.36
HDAC9-212ENST00000432645 ERICH3Q5RHP9 1530 aa12.81□□□□□ -0.36
HDAC9-212ENST00000432645 TOPBP1Q92547 1522 aa12.79□□□□□ -0.36
HDAC9-212ENST00000432645 LAMC3Q9Y6N6 1575 aa12.79□□□□□ -0.36
HDAC9-212ENST00000432645 ERICH6Q7L0X2 663 aa12.78□□□□□ -0.36
HDAC9-212ENST00000432645 DNMBPQ6XZF7 1577 aa12.78□□□□□ -0.36
HDAC9-212ENST00000432645 POLA1P09884 1462 aaPredicted RBP12.77□□□□□ -0.36
HDAC9-212ENST00000432645 VPS8Q8N3P4 1428 aa12.77□□□□□ -0.36
HDAC9-212ENST00000432645 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
HDAC9-212ENST00000432645 PDS5BQ9NTI5 1447 aa12.76□□□□□ -0.37
HDAC9-212ENST00000432645 URB2Q14146 1524 aaKnown RBP12.75□□□□□ -0.37
HDAC9-212ENST00000432645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-212ENST00000432645 ARAP1Q96P48 1450 aa12.71□□□□□ -0.38
HDAC9-212ENST00000432645 ABCA10Q8WWZ4 1543 aa12.7□□□□□ -0.38
HDAC9-212ENST00000432645 TDRD9Q8NDG6 1382 aaKnown RBP12.7□□□□□ -0.38
HDAC9-212ENST00000432645 KIF21AQ7Z4S6 1674 aa12.68□□□□□ -0.38
HDAC9-212ENST00000432645 ZEB1P37275 1124 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-212ENST00000432645 CCER1Q8TC90 406 aaPredicted RBP12.67□□□□□ -0.38
HDAC9-212ENST00000432645 ARHGAP35Q9NRY4 1499 aa12.66□□□□□ -0.38
HDAC9-212ENST00000432645 P3H3Q8IVL6 736 aa12.66□□□□□ -0.38
HDAC9-212ENST00000432645 HNRNPUL2Q1KMD3 747 aaKnown RBP12.65□□□□□ -0.38
HDAC9-212ENST00000432645 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-212ENST00000432645 GAPVD1Q14C86 1478 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms