RNA–Protein interactions for RNA: ENST00000431803.2

CDC42-IT1-201, CDC42 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene CDC42-IT1, Length 692 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-IT1-201ENST00000431803 AEBP2Q6ZN18 517 aaPredicted RBP26.65■■□□□ 1.86
CDC42-IT1-201ENST00000431803 CHIC1Q5VXU3 224 aa25.67■■□□□ 1.7
CDC42-IT1-201ENST00000431803 NISCHQ9Y2I1 1504 aa23.62■■□□□ 1.37
CDC42-IT1-201ENST00000431803 SENP3Q9H4L4 574 aaPredicted RBP22.66■■□□□ 1.22
CDC42-IT1-201ENST00000431803 PHF23Q9BUL5 403 aaPredicted RBP22.55■■□□□ 1.2
CDC42-IT1-201ENST00000431803 CCDC180Q9P1Z9 1646 aa21.18■□□□□ 0.98
CDC42-IT1-201ENST00000431803 FOXD1Q16676 465 aa21.09■□□□□ 0.97
CDC42-IT1-201ENST00000431803 ABCC9O60706 1549 aa21.04■□□□□ 0.96
CDC42-IT1-201ENST00000431803 PLPPR3Q6T4P5 718 aa20.69■□□□□ 0.9
CDC42-IT1-201ENST00000431803 RB1CC1Q8TDY2 1594 aa20.09■□□□□ 0.81
CDC42-IT1-201ENST00000431803 PPP6R1Q9UPN7 881 aa20.02■□□□□ 0.8
CDC42-IT1-201ENST00000431803 NACADO15069 1562 aa20■□□□□ 0.79
CDC42-IT1-201ENST00000431803 ADRA2BP18089 450 aa19.99■□□□□ 0.79
CDC42-IT1-201ENST00000431803 PIAS4Q8N2W9 510 aaPredicted RBP19.82■□□□□ 0.76
CDC42-IT1-201ENST00000431803 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
CDC42-IT1-201ENST00000431803 DCAF8L2P0C7V8 631 aa19.77■□□□□ 0.76
CDC42-IT1-201ENST00000431803 DNAJC5BQ9UF47 199 aa19.68■□□□□ 0.74
CDC42-IT1-201ENST00000431803 UNC13AQ9UPW8 1703 aa19.65■□□□□ 0.74
CDC42-IT1-201ENST00000431803 ZCCHC6Q5VYS8 1495 aaKnown RBP19.61■□□□□ 0.73
CDC42-IT1-201ENST00000431803 MSH5O43196 834 aa19.58■□□□□ 0.72
CDC42-IT1-201ENST00000431803 PABPN1Q86U42 306 aaKnown RBP eCLIP19.58■□□□□ 0.72
CDC42-IT1-201ENST00000431803 DCAF1Q9Y4B6 1507 aa19.55■□□□□ 0.72
CDC42-IT1-201ENST00000431803 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
CDC42-IT1-201ENST00000431803 SHROOM4Q9ULL8 1493 aa19.31■□□□□ 0.68
CDC42-IT1-201ENST00000431803 SCRIBQ14160 1630 aa19.26■□□□□ 0.67
CDC42-IT1-201ENST00000431803 CC2D2AQ9P2K1 1620 aa19.04■□□□□ 0.64
CDC42-IT1-201ENST00000431803 EIF4G1Q04637 1599 aaKnown RBP19.03■□□□□ 0.64
CDC42-IT1-201ENST00000431803 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
CDC42-IT1-201ENST00000431803 NCAPD3P42695 1498 aa18.46■□□□□ 0.55
CDC42-IT1-201ENST00000431803 POTEDQ86YR6 584 aa18.46■□□□□ 0.55
CDC42-IT1-201ENST00000431803 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
CDC42-IT1-201ENST00000431803 ATAD2BQ9ULI0 1458 aa18.4■□□□□ 0.54
CDC42-IT1-201ENST00000431803 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
CDC42-IT1-201ENST00000431803 HMGXB3Q12766 1538 aa18.34■□□□□ 0.53
CDC42-IT1-201ENST00000431803 BAZ1AQ9NRL2 1556 aaPredicted RBP18.33■□□□□ 0.52
CDC42-IT1-201ENST00000431803 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
CDC42-IT1-201ENST00000431803 PEG3Q9GZU2 1588 aa18.26■□□□□ 0.51
CDC42-IT1-201ENST00000431803 MAPK8IP2Q13387 824 aaPredicted RBP18.24■□□□□ 0.51
CDC42-IT1-201ENST00000431803 BAZ1BQ9UIG0 1483 aaKnown RBP18.21■□□□□ 0.51
CDC42-IT1-201ENST00000431803 PPP4R3CPQ6ZMV5 832 aa18.2■□□□□ 0.5
CDC42-IT1-201ENST00000431803 MROH2BQ7Z745 1585 aa18.19■□□□□ 0.5
CDC42-IT1-201ENST00000431803 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
CDC42-IT1-201ENST00000431803 CUX2O14529 1486 aa18.15■□□□□ 0.5
CDC42-IT1-201ENST00000431803 NESP48681 1621 aa18.12■□□□□ 0.49
CDC42-IT1-201ENST00000431803 DMRT2Q9Y5R5 561 aa18.04■□□□□ 0.48
CDC42-IT1-201ENST00000431803 LAMC3Q9Y6N6 1575 aa18.03■□□□□ 0.48
CDC42-IT1-201ENST00000431803 DNAJC5Q9H3Z4 198 aa18.01■□□□□ 0.47
CDC42-IT1-201ENST00000431803 WIZO95785 1651 aa17.96■□□□□ 0.47
CDC42-IT1-201ENST00000431803 THOC2Q8NI27 1593 aaKnown RBP17.96■□□□□ 0.46
CDC42-IT1-201ENST00000431803 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.46
CDC42-IT1-201ENST00000431803 KIF21AQ7Z4S6 1674 aa17.89■□□□□ 0.45
CDC42-IT1-201ENST00000431803 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
CDC42-IT1-201ENST00000431803 RSF1Q96T23 1441 aaPredicted RBP17.85■□□□□ 0.45
CDC42-IT1-201ENST00000431803 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
CDC42-IT1-201ENST00000431803 CNKSR2Q8WXI2 1034 aa17.76■□□□□ 0.43
CDC42-IT1-201ENST00000431803 MRC2Q9UBG0 1479 aa17.75■□□□□ 0.43
CDC42-IT1-201ENST00000431803 WDR62O43379 1518 aa17.73■□□□□ 0.43
CDC42-IT1-201ENST00000431803 CFTRP13569 1480 aa17.72■□□□□ 0.43
CDC42-IT1-201ENST00000431803 CEP164Q9UPV0 1460 aa17.69■□□□□ 0.42
CDC42-IT1-201ENST00000431803 FANCD2Q9BXW9 1451 aa17.68■□□□□ 0.42
CDC42-IT1-201ENST00000431803 NCBP3Q53F19 620 aaKnown RBP17.61■□□□□ 0.41
CDC42-IT1-201ENST00000431803 CCDC88BA6NC98 1476 aa17.55■□□□□ 0.4
CDC42-IT1-201ENST00000431803 URB2Q14146 1524 aaKnown RBP17.54■□□□□ 0.4
CDC42-IT1-201ENST00000431803 PRDM2Q13029 1718 aa17.53■□□□□ 0.4
CDC42-IT1-201ENST00000431803 HOXD11P31277 338 aaPredicted RBP17.51■□□□□ 0.39
CDC42-IT1-201ENST00000431803 RNF216Q9NWF9 866 aaPredicted RBP17.49■□□□□ 0.39
CDC42-IT1-201ENST00000431803 KCNA4P22459 653 aa17.39■□□□□ 0.37
CDC42-IT1-201ENST00000431803 NPM3O75607 178 aaKnown RBP17.37■□□□□ 0.37
CDC42-IT1-201ENST00000431803 TOPBP1Q92547 1522 aa17.36■□□□□ 0.37
CDC42-IT1-201ENST00000431803 IFT140Q96RY7 1462 aa17.34■□□□□ 0.37
CDC42-IT1-201ENST00000431803 DCAF8L1A6NGE4 600 aa17.33■□□□□ 0.36
CDC42-IT1-201ENST00000431803 ABCC8Q09428 1581 aa17.32■□□□□ 0.36
CDC42-IT1-201ENST00000431803 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
CDC42-IT1-201ENST00000431803 ZNF608Q9ULD9 1512 aaPredicted RBP17.3■□□□□ 0.36
CDC42-IT1-201ENST00000431803 OSCARQ8IYS5 282 aa17.27■□□□□ 0.36
CDC42-IT1-201ENST00000431803 EIF4G3O43432 1585 aaKnown RBP17.22■□□□□ 0.35
CDC42-IT1-201ENST00000431803 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
CDC42-IT1-201ENST00000431803 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
CDC42-IT1-201ENST00000431803 TRIM41Q8WV44 630 aa17.19■□□□□ 0.34
CDC42-IT1-201ENST00000431803 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.33
CDC42-IT1-201ENST00000431803 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
CDC42-IT1-201ENST00000431803 CUX1P39880 1505 aa17.09■□□□□ 0.33
CDC42-IT1-201ENST00000431803 RIMBP3CA6NJZ7 1639 aa17.08■□□□□ 0.32
CDC42-IT1-201ENST00000431803 RIMBP3BA6NNM3 1639 aa17.08■□□□□ 0.32
CDC42-IT1-201ENST00000431803 RIMBP3Q9UFD9 1639 aa17.08■□□□□ 0.32
CDC42-IT1-201ENST00000431803 FGD5Q6ZNL6 1462 aa17.08■□□□□ 0.32
CDC42-IT1-201ENST00000431803 SOGA1O94964 1423 aa17.08■□□□□ 0.32
CDC42-IT1-201ENST00000431803 WDR97A6NE52 1622 aa17.07■□□□□ 0.32
CDC42-IT1-201ENST00000431803 CHD1O14646 1710 aa17.05■□□□□ 0.32
CDC42-IT1-201ENST00000431803 ARHGEF11O15085 1522 aa17.04■□□□□ 0.32
CDC42-IT1-201ENST00000431803 TDRD9Q8NDG6 1382 aaKnown RBP17.03■□□□□ 0.32
CDC42-IT1-201ENST00000431803 SUPT5HO00267 1087 aaKnown RBP17.01■□□□□ 0.31
CDC42-IT1-201ENST00000431803 SNAPC4Q5SXM2 1469 aa16.98■□□□□ 0.31
CDC42-IT1-201ENST00000431803 MAGI1Q96QZ7 1491 aaPredicted RBP16.96■□□□□ 0.31
CDC42-IT1-201ENST00000431803 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
CDC42-IT1-201ENST00000431803 FBLN2P98095 1184 aa16.94■□□□□ 0.3
CDC42-IT1-201ENST00000431803 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
CDC42-IT1-201ENST00000431803 CLASP1Q7Z460 1538 aa16.9■□□□□ 0.3
CDC42-IT1-201ENST00000431803 ABCA5Q8WWZ7 1642 aa16.89■□□□□ 0.29
CDC42-IT1-201ENST00000431803 SYNJ2O15056 1496 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms